RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 HIST3H3Q16695 136 aa12.95□□□□□ -0.34
MCF2L-228ENST00000487354 TBC1D28Q2M2D7 210 aa12.95□□□□□ -0.34
MCF2L-228ENST00000487354 MSANTD1Q6ZTZ1 278 aa12.95□□□□□ -0.34
MCF2L-228ENST00000487354 SLC35D2Q76EJ3 337 aa12.95□□□□□ -0.34
MCF2L-228ENST00000487354 OR5J2Q8NH18 312 aa12.95□□□□□ -0.34
MCF2L-228ENST00000487354 GTF2H4Q92759 462 aa12.95□□□□□ -0.34
MCF2L-228ENST00000487354 MARS2Q96GW9 593 aaKnown RBP12.95□□□□□ -0.34
MCF2L-228ENST00000487354 EPYCQ99645 322 aa12.95□□□□□ -0.34
MCF2L-228ENST00000487354 ROPN1BQ9BZX4 212 aaPredicted RBP12.95□□□□□ -0.34
MCF2L-228ENST00000487354 C1orf198Q9H425 327 aa12.95□□□□□ -0.34
MCF2L-228ENST00000487354 ROPN1Q9HAT0 212 aaPredicted RBP12.95□□□□□ -0.34
MCF2L-228ENST00000487354 SLC25A37Q9NYZ2 338 aa12.95□□□□□ -0.34
MCF2L-228ENST00000487354 PDP1Q9P0J1 537 aaPredicted RBP12.95□□□□□ -0.34
MCF2L-228ENST00000487354 TRIM33Q9UPN9 1127 aa12.95□□□□□ -0.34
MCF2L-228ENST00000487354 INSIG2Q9Y5U4 225 aa12.95□□□□□ -0.34
MCF2L-228ENST00000487354 DOCK11Q5JSL3 2073 aa12.95□□□□□ -0.34
MCF2L-228ENST00000487354 ISPDA4D126 451 aa12.94□□□□□ -0.34
MCF2L-228ENST00000487354 A8MXK9 166 aa12.94□□□□□ -0.34
MCF2L-228ENST00000487354 F5H0A9 414 aaPredicted RBP12.94□□□□□ -0.34
MCF2L-228ENST00000487354 TPD52L2O43399 206 aaKnown RBP12.94□□□□□ -0.34
MCF2L-228ENST00000487354 FOXH1O75593 365 aa12.94□□□□□ -0.34
MCF2L-228ENST00000487354 SLC22A3O75751 556 aa12.94□□□□□ -0.34
MCF2L-228ENST00000487354 LYPD3O95274 346 aa12.94□□□□□ -0.34
MCF2L-228ENST00000487354 ANP32DO95626 131 aa12.94□□□□□ -0.34
MCF2L-228ENST00000487354 THY1P04216 161 aa12.94□□□□□ -0.34
MCF2L-228ENST00000487354 ADORA3P0DMS8 318 aa12.94□□□□□ -0.34
MCF2L-228ENST00000487354 IGHV4-38-2P0DP08 117 aa12.94□□□□□ -0.34
MCF2L-228ENST00000487354 GCH1P30793 250 aa12.94□□□□□ -0.34
MCF2L-228ENST00000487354 FADDQ13158 208 aa12.94□□□□□ -0.34
MCF2L-228ENST00000487354 SPATA46Q5T0L3 261 aa12.94□□□□□ -0.34
MCF2L-228ENST00000487354 TMEM53Q6P2H8 277 aa12.94□□□□□ -0.34
MCF2L-228ENST00000487354 MAVSQ7Z434 540 aa12.94□□□□□ -0.34
MCF2L-228ENST00000487354 ICA1LQ8NDH6 482 aa12.94□□□□□ -0.34
MCF2L-228ENST00000487354 OR1J1Q8NGS3 322 aa12.94□□□□□ -0.34
MCF2L-228ENST00000487354 NFKBIDQ8NI38 313 aa12.94□□□□□ -0.34
MCF2L-228ENST00000487354 WFDC12Q8WWY7 111 aa12.94□□□□□ -0.34
MCF2L-228ENST00000487354 GEMIN6Q8WXD5 167 aaKnown RBP12.94□□□□□ -0.34
MCF2L-228ENST00000487354 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.94□□□□□ -0.34
MCF2L-228ENST00000487354 ITCHQ96J02 903 aa12.94□□□□□ -0.34
MCF2L-228ENST00000487354 MAELQ96JY0 434 aaKnown RBP12.94□□□□□ -0.34
MCF2L-228ENST00000487354 SEPHS2Q99611 448 aa12.94□□□□□ -0.34
MCF2L-228ENST00000487354 GPA33Q99795 319 aa12.94□□□□□ -0.34
MCF2L-228ENST00000487354 CACYBPQ9HB71 228 aaKnown RBP12.94□□□□□ -0.34
MCF2L-228ENST00000487354 SDR39U1Q9NRG7 319 aaPredicted RBP12.94□□□□□ -0.34
MCF2L-228ENST00000487354 MMP24Q9Y5R2 645 aa12.94□□□□□ -0.34
MCF2L-228ENST00000487354 AUP1Q9Y679 476 aa12.94□□□□□ -0.34
MCF2L-228ENST00000487354 TMEM247A6NEH6 219 aa12.93□□□□□ -0.34
MCF2L-228ENST00000487354 CLIC1O00299 241 aa12.93□□□□□ -0.34
MCF2L-228ENST00000487354 MGRN1O60291 552 aa12.93□□□□□ -0.34
MCF2L-228ENST00000487354 MT-ATP6P00846 226 aa12.93□□□□□ -0.34
MCF2L-228ENST00000487354 CD55P08174 381 aa12.93□□□□□ -0.34
MCF2L-228ENST00000487354 QDPRP09417 244 aa12.93□□□□□ -0.34
MCF2L-228ENST00000487354 IDO1P14902 403 aa12.93□□□□□ -0.34
MCF2L-228ENST00000487354 OMGP23515 440 aa12.93□□□□□ -0.34
MCF2L-228ENST00000487354 PAX2Q02962 417 aa12.93□□□□□ -0.34
MCF2L-228ENST00000487354 STX3Q13277 289 aa12.93□□□□□ -0.34
MCF2L-228ENST00000487354 ZNF74Q16587 644 aa12.93□□□□□ -0.34
MCF2L-228ENST00000487354 NRN1LQ496H8 165 aa12.93□□□□□ -0.34
MCF2L-228ENST00000487354 SLC2A7Q6PXP3 512 aa12.93□□□□□ -0.34
MCF2L-228ENST00000487354 C9orf139Q6ZV77 190 aa12.93□□□□□ -0.34
MCF2L-228ENST00000487354 RFPL4BQ6ZWI9 263 aa12.93□□□□□ -0.34
MCF2L-228ENST00000487354 RHOUQ7L0Q8 258 aa12.93□□□□□ -0.34
MCF2L-228ENST00000487354 SLC16A14Q7RTX9 510 aa12.93□□□□□ -0.34
MCF2L-228ENST00000487354 TSPYL5Q86VY4 417 aaPredicted RBP12.93□□□□□ -0.34
MCF2L-228ENST00000487354 JAZF1Q86VZ6 243 aa12.93□□□□□ -0.34
MCF2L-228ENST00000487354 KIRREL3Q8IZU9 778 aa12.93□□□□□ -0.34
MCF2L-228ENST00000487354 RBM15BQ8NDT2 890 aaKnown RBP12.93□□□□□ -0.34
MCF2L-228ENST00000487354 ZNF566Q969W8 418 aa12.93□□□□□ -0.34
MCF2L-228ENST00000487354 SLC25A28Q96A46 364 aa12.93□□□□□ -0.34
MCF2L-228ENST00000487354 SLC25A44Q96H78 314 aaPredicted RBP12.93□□□□□ -0.34
MCF2L-228ENST00000487354 POM121L2Q96KW2 1035 aa12.93□□□□□ -0.34
MCF2L-228ENST00000487354 TMEM109Q9BVC6 243 aa12.93□□□□□ -0.34
MCF2L-228ENST00000487354 SSU72Q9NP77 194 aaKnown RBP12.93□□□□□ -0.34
MCF2L-228ENST00000487354 ZIM2Q9NZV7 527 aa12.93□□□□□ -0.34
MCF2L-228ENST00000487354 KLHL21Q9UJP4 597 aa12.93□□□□□ -0.34
MCF2L-228ENST00000487354 NPTNQ9Y639 398 aa12.93□□□□□ -0.34
MCF2L-228ENST00000487354 LOC100509620A0A075B734 347 aa12.92□□□□□ -0.34
MCF2L-228ENST00000487354 MDFIC2A0A1B0GVS7 189 aa12.92□□□□□ -0.34
MCF2L-228ENST00000487354 FARS2O95363 451 aaKnown RBP12.92□□□□□ -0.34
MCF2L-228ENST00000487354 DRD4P21917 467 aa12.92□□□□□ -0.34
MCF2L-228ENST00000487354 SLC6A9P48067 706 aa12.92□□□□□ -0.34
MCF2L-228ENST00000487354 ZNF133P52736 654 aaPredicted RBP12.92□□□□□ -0.34
MCF2L-228ENST00000487354 RGS8P57771 180 aaPredicted RBP12.92□□□□□ -0.34
MCF2L-228ENST00000487354 IFFO1Q0D2I5 559 aa12.92□□□□□ -0.34
MCF2L-228ENST00000487354 NPTX1Q15818 432 aa12.92□□□□□ -0.34
MCF2L-228ENST00000487354 SLC36A2Q495M3 483 aa12.92□□□□□ -0.34
MCF2L-228ENST00000487354 PABPC1L2AQ5JQF8 200 aa12.92□□□□□ -0.34
MCF2L-228ENST00000487354 C6orf10Q5SRN2 563 aa12.92□□□□□ -0.34
MCF2L-228ENST00000487354 THEM4Q5T1C6 240 aa12.92□□□□□ -0.34
MCF2L-228ENST00000487354 SWT1Q5T5J6 900 aaKnown RBP12.92□□□□□ -0.34
MCF2L-228ENST00000487354 MBNL2Q5VZF2 373 aaKnown RBP12.92□□□□□ -0.34
MCF2L-228ENST00000487354 DPPA2Q7Z7J5 298 aa12.92□□□□□ -0.34
MCF2L-228ENST00000487354 C10orf53Q8N6V4 93 aa12.92□□□□□ -0.34
MCF2L-228ENST00000487354 OR1J2Q8NGS2 313 aa12.92□□□□□ -0.34
MCF2L-228ENST00000487354 SLC25A40Q8TBP6 338 aa12.92□□□□□ -0.34
MCF2L-228ENST00000487354 ST7LQ8TDW4 575 aa12.92□□□□□ -0.34
MCF2L-228ENST00000487354 MCHR2Q969V1 340 aa12.92□□□□□ -0.34
MCF2L-228ENST00000487354 NABP1Q96AH0 204 aa12.92□□□□□ -0.34
MCF2L-228ENST00000487354 DACT3Q96B18 629 aaPredicted RBP12.92□□□□□ -0.34
MCF2L-228ENST00000487354 TMIGD2Q96BF3 282 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms