RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 FN3KRPQ9HA64 309 aa1.74□□□□□ -2.13
CD44-239ENST00000639002 MEAF6Q9HAF1 191 aa1.74□□□□□ -2.13
CD44-239ENST00000639002 FOLH1BQ9HBA9 442 aa1.74□□□□□ -2.13
CD44-239ENST00000639002 CHRAC1Q9NRG0 131 aa1.74□□□□□ -2.13
CD44-239ENST00000639002 MRPS33Q9Y291 106 aaKnown RBP1.74□□□□□ -2.13
CD44-239ENST00000639002 N6AMT1Q9Y5N5 214 aa1.74□□□□□ -2.13
CD44-239ENST00000639002 RFNGQ9Y644 331 aa1.74□□□□□ -2.13
CD44-239ENST00000639002 SHANK1Q9Y566 2161 aa1.74□□□□□ -2.13
CD44-239ENST00000639002 CENPJQ9HC77 1338 aaPredicted RBP1.73□□□□□ -2.13
CD44-239ENST00000639002 LOC100653049A0A140TA62 436 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 A0A1B0GUS0 222 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 GOLGA6L7A0A1B0GV03 622 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 SERTM2A0A1B0GWG4 89 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 HEATR9A2RTY3 570 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 MBLAC1A4D2B0 266 aaPredicted RBP1.73□□□□□ -2.13
CD44-239ENST00000639002 TRDCB7Z8K6 153 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 NDUFS8O00217 210 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 CETN3O15182 167 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 NVLO15381 856 aaKnown RBP1.73□□□□□ -2.13
CD44-239ENST00000639002 CXCL13O43927 109 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 PFKFB2O60825 505 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 KRT34O76011 436 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 YEATS4O95619 227 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 AP2A1O95782 977 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 KRT14P02533 472 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 LGALS2P05162 132 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 FGF4P08620 206 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 UQCRFS1P1P0C7P4 283 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 PGAM1P18669 254 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 MX1P20591 662 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 COX5AP20674 150 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 CD9P21926 228 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 HMGB2P26583 209 aaKnown RBP1.73□□□□□ -2.13
CD44-239ENST00000639002 CD34P28906 385 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 GNA11P29992 359 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 CCR1P32246 355 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 SHMT2P34897 504 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 TAGLN2P37802 199 aaKnown RBP1.73□□□□□ -2.13
CD44-239ENST00000639002 RPL13AP40429 203 aaKnown RBP1.73□□□□□ -2.13
CD44-239ENST00000639002 PPT1P50897 306 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 UBE2HP62256 183 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 FGL1Q08830 312 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 ASPHQ12797 758 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 SRSF5Q13243 272 aaKnown RBP1.73□□□□□ -2.13
CD44-239ENST00000639002 DOC2AQ14183 400 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 KIAA0087Q14695 138 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 GANABQ14697 944 aaKnown RBP1.73□□□□□ -2.13
CD44-239ENST00000639002 RFX4Q33E94 735 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 BCL7AQ4VC05 210 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 TP53I3Q53FA7 332 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 HSP90AA4PQ58FG1 418 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 SPANXN2Q5MJ10 180 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 C10orf120Q5SQS8 335 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 DNLZQ5SXM8 178 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 MARCH8Q5T0T0 291 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 C1orf185Q5T7R7 199 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 PRAMEF5Q5TYX0 476 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 PRAMEF6Q5VXH4 476 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 TIGD3Q6B0B8 471 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 ZNF620Q6ZNG0 422 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 Q6ZPB1 254 aaPredicted RBP1.73□□□□□ -2.13
CD44-239ENST00000639002 C19orf35Q6ZS72 473 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 ZNF683Q8IZ20 524 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 PGAM4Q8N0Y7 254 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 TRIML2Q8N7C3 387 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 OR9K2Q8NGE7 335 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 OR10G9Q8NGN4 311 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 OR2T3Q8NH03 318 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 FAM81AQ8TBF8 368 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 MCOLN3Q8TDD5 553 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP1.73□□□□□ -2.13
CD44-239ENST00000639002 ESR2Q92731 530 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 PEX13Q92968 403 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 MCUR1Q96AQ8 359 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 EXOSC8Q96B26 276 aaKnown RBP1.73□□□□□ -2.13
CD44-239ENST00000639002 LRRC39Q96DD0 335 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 C19orf60Q96EN9 201 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 SLC41A3Q96GZ6 507 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 ATP6V1G3Q96LB4 118 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 AMDHD1Q96NU7 426 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 TGM7Q96PF1 710 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 CLCC1Q96S66 551 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 NIPSNAP3BQ9BS92 247 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 NAT9Q9BTE0 207 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 RBKSQ9H477 322 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 NHEJ1Q9H9Q4 299 aaPredicted RBP1.73□□□□□ -2.13
CD44-239ENST00000639002 POPDC2Q9HBU9 364 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 SGK2Q9HBY8 427 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 SLC40A1Q9NP59 571 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 IL36GQ9NZH8 169 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 BFARQ9NZS9 450 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 SPATA7Q9P0W8 599 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 SEC14L3Q9UDX4 400 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 KIAA1257Q9ULG3 409 aa1.73□□□□□ -2.13
CD44-239ENST00000639002 RPAP1Q9BWH6 1393 aaPredicted RBP1.72□□□□□ -2.13
CD44-239ENST00000639002 LRP5LA4QPB2 252 aa1.72□□□□□ -2.13
CD44-239ENST00000639002 A8MXQ7 604 aa1.72□□□□□ -2.13
CD44-239ENST00000639002 F5H6K3 240 aa1.72□□□□□ -2.13
CD44-239ENST00000639002 RGS16O15492 202 aaPredicted RBP1.72□□□□□ -2.13
CD44-239ENST00000639002 MBTPS2O43462 519 aa1.72□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms