RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 TMEFF2Q9UIK5 374 aaPredicted RBP6.55□□□□□ -1.36
CUX1-219ENST00000606749 ZNF229Q9UJW7 825 aa6.55□□□□□ -1.36
CUX1-219ENST00000606749 FBXL3Q9UKT7 428 aa6.55□□□□□ -1.36
CUX1-219ENST00000606749 FZR1Q9UM11 496 aa6.55□□□□□ -1.36
CUX1-219ENST00000606749 MXRA5Q9NR99 2828 aa6.55□□□□□ -1.36
CUX1-219ENST00000606749 SVEP1Q4LDE5 3571 aa6.54□□□□□ -1.36
CUX1-219ENST00000606749 A0A0G2JND7 137 aa6.54□□□□□ -1.36
CUX1-219ENST00000606749 BLOC1S5-TXNDC5H3BN57 136 aa6.54□□□□□ -1.36
CUX1-219ENST00000606749 KPNA4O00629 521 aaPredicted RBP6.54□□□□□ -1.36
CUX1-219ENST00000606749 ENTPD5O75356 428 aa6.54□□□□□ -1.36
CUX1-219ENST00000606749 BCL10O95999 233 aa6.54□□□□□ -1.36
CUX1-219ENST00000606749 HPXP02790 462 aa6.54□□□□□ -1.36
CUX1-219ENST00000606749 MT-ND1P03886 318 aa6.54□□□□□ -1.36
CUX1-219ENST00000606749 UMPSP11172 480 aa6.54□□□□□ -1.36
CUX1-219ENST00000606749 NAT2P11245 290 aa6.54□□□□□ -1.36
CUX1-219ENST00000606749 FUT1P19526 365 aa6.54□□□□□ -1.36
CUX1-219ENST00000606749 APEX1P27695 318 aaKnown RBP6.54□□□□□ -1.36
CUX1-219ENST00000606749 ALDH3B1P43353 468 aa6.54□□□□□ -1.36
CUX1-219ENST00000606749 CDH15P55291 814 aa6.54□□□□□ -1.36
CUX1-219ENST00000606749 SRSF2Q01130 221 aaKnown RBP6.54□□□□□ -1.36
CUX1-219ENST00000606749 RUNX1T1Q06455 604 aa6.54□□□□□ -1.36
CUX1-219ENST00000606749 MELKQ14680 651 aa6.54□□□□□ -1.36
CUX1-219ENST00000606749 MAD2L1BPQ15013 274 aaPredicted RBP6.54□□□□□ -1.36
CUX1-219ENST00000606749 HIST3H3Q16695 136 aa6.54□□□□□ -1.36
CUX1-219ENST00000606749 VMACQ2NL98 169 aa6.54□□□□□ -1.36
CUX1-219ENST00000606749 UGT2A3Q6UWM9 527 aa6.54□□□□□ -1.36
CUX1-219ENST00000606749 CALHM3Q86XJ0 350 aa6.54□□□□□ -1.36
CUX1-219ENST00000606749 NKAIN4Q8IVV8 208 aa6.54□□□□□ -1.36
CUX1-219ENST00000606749 RASSF5Q8WWW0 418 aa6.54□□□□□ -1.36
CUX1-219ENST00000606749 MCHR2Q969V1 340 aa6.54□□□□□ -1.36
CUX1-219ENST00000606749 LRRC58Q96CX6 371 aa6.54□□□□□ -1.36
CUX1-219ENST00000606749 SIKE1Q9BRV8 207 aa6.54□□□□□ -1.36
CUX1-219ENST00000606749 MRPL13Q9BYD1 178 aaKnown RBP6.54□□□□□ -1.36
CUX1-219ENST00000606749 RNF121Q9H920 327 aa6.54□□□□□ -1.36
CUX1-219ENST00000606749 SLC7A8Q9UHI5 535 aa6.54□□□□□ -1.36
CUX1-219ENST00000606749 DUSP13Q9UII6 198 aa6.54□□□□□ -1.36
CUX1-219ENST00000606749 SH3GLB1Q9Y371 365 aa6.54□□□□□ -1.36
CUX1-219ENST00000606749 A0A1W2PRG6 482 aa6.53□□□□□ -1.36
CUX1-219ENST00000606749 SLC22A23A1A5C7 686 aa6.53□□□□□ -1.36
CUX1-219ENST00000606749 WNT9BO14905 357 aa6.53□□□□□ -1.36
CUX1-219ENST00000606749 SHOX2O60902 331 aaPredicted RBP6.53□□□□□ -1.36
CUX1-219ENST00000606749 TRMUO75648 421 aaKnown RBP6.53□□□□□ -1.36
CUX1-219ENST00000606749 OR7A10O76100 309 aa6.53□□□□□ -1.36
CUX1-219ENST00000606749 FARS2O95363 451 aaKnown RBP6.53□□□□□ -1.36
CUX1-219ENST00000606749 CLPTM1O96005 669 aa6.53□□□□□ -1.36
CUX1-219ENST00000606749 NPPAP01160 153 aa6.53□□□□□ -1.36
CUX1-219ENST00000606749 IGHG1P01857 330 aa6.53□□□□□ -1.36
CUX1-219ENST00000606749 F13BP05160 661 aa6.53□□□□□ -1.36
CUX1-219ENST00000606749 FAM157BP0CG42 384 aa6.53□□□□□ -1.36
CUX1-219ENST00000606749 CCL2P13500 99 aa6.53□□□□□ -1.36
CUX1-219ENST00000606749 ZNF250P15622 560 aa6.53□□□□□ -1.36
CUX1-219ENST00000606749 ACADSP16219 412 aa6.53□□□□□ -1.36
CUX1-219ENST00000606749 TNFRSF1BP20333 461 aa6.53□□□□□ -1.36
CUX1-219ENST00000606749 LSP1P33241 339 aa6.53□□□□□ -1.36
CUX1-219ENST00000606749 AQP2P41181 271 aa6.53□□□□□ -1.36
CUX1-219ENST00000606749 RBM34P42696 430 aaKnown RBP6.53□□□□□ -1.36
CUX1-219ENST00000606749 DVL1P1P54792 670 aaPredicted RBP6.53□□□□□ -1.36
CUX1-219ENST00000606749 UGT2B15P54855 530 aa6.53□□□□□ -1.36
CUX1-219ENST00000606749 TMEM33P57088 247 aa6.53□□□□□ -1.36
CUX1-219ENST00000606749 CLRN1P58418 232 aa6.53□□□□□ -1.36
CUX1-219ENST00000606749 RPS23P62266 143 aaKnown RBP6.53□□□□□ -1.36
CUX1-219ENST00000606749 MRPS11P82912 194 aaKnown RBP6.53□□□□□ -1.36
CUX1-219ENST00000606749 MYBPC1Q00872 1141 aa6.53□□□□□ -1.36
CUX1-219ENST00000606749 RPL18Q07020 188 aaKnown RBP6.53□□□□□ -1.36
CUX1-219ENST00000606749 PIN1Q13526 163 aaPredicted RBP6.53□□□□□ -1.36
CUX1-219ENST00000606749 CCNIQ14094 377 aa6.53□□□□□ -1.36
CUX1-219ENST00000606749 LAPTM4AQ15012 233 aa6.53□□□□□ -1.36
CUX1-219ENST00000606749 SLC36A2Q495M3 483 aa6.53□□□□□ -1.36
CUX1-219ENST00000606749 NRN1LQ496H8 165 aa6.53□□□□□ -1.36
CUX1-219ENST00000606749 RABL3Q5HYI8 236 aa6.53□□□□□ -1.36
CUX1-219ENST00000606749 REP15Q6BDI9 236 aa6.53□□□□□ -1.36
CUX1-219ENST00000606749 RGS7BPQ6MZT1 257 aaPredicted RBP6.53□□□□□ -1.36
CUX1-219ENST00000606749 TMEM53Q6P2H8 277 aa6.53□□□□□ -1.36
CUX1-219ENST00000606749 NANOGNBQ7Z5D8 188 aa6.53□□□□□ -1.36
CUX1-219ENST00000606749 DPPA2Q7Z7J5 298 aa6.53□□□□□ -1.36
CUX1-219ENST00000606749 CARM1Q86X55 608 aa6.53□□□□□ -1.36
CUX1-219ENST00000606749 PAQR4Q8N4S7 273 aaPredicted RBP6.53□□□□□ -1.36
CUX1-219ENST00000606749 SYT14Q8NB59 555 aa6.53□□□□□ -1.36
CUX1-219ENST00000606749 SLC30A7Q8NEW0 376 aa6.53□□□□□ -1.36
CUX1-219ENST00000606749 OR4K5Q8NGD3 323 aa6.53□□□□□ -1.36
CUX1-219ENST00000606749 PFN4Q8NHR9 129 aa6.53□□□□□ -1.36
CUX1-219ENST00000606749 TMEM255BQ8WV15 326 aa6.53□□□□□ -1.36
CUX1-219ENST00000606749 C10orf82Q8WW14 230 aa6.53□□□□□ -1.36
CUX1-219ENST00000606749 LIPHQ8WWY8 451 aa6.53□□□□□ -1.36
CUX1-219ENST00000606749 ASB10Q8WXI3 467 aa6.53□□□□□ -1.36
CUX1-219ENST00000606749 RDH5Q92781 318 aa6.53□□□□□ -1.36
CUX1-219ENST00000606749 YIPF5Q969M3 257 aa6.53□□□□□ -1.36
CUX1-219ENST00000606749 ZNF583Q96ND8 569 aa6.53□□□□□ -1.36
CUX1-219ENST00000606749 ZNF347Q96SE7 839 aa6.53□□□□□ -1.36
CUX1-219ENST00000606749 SEPHS2Q99611 448 aa6.53□□□□□ -1.36
CUX1-219ENST00000606749 SH3GL1Q99961 368 aa6.53□□□□□ -1.36
CUX1-219ENST00000606749 ECSITQ9BQ95 431 aa6.53□□□□□ -1.36
CUX1-219ENST00000606749 C19orf24Q9BVV8 132 aa6.53□□□□□ -1.36
CUX1-219ENST00000606749 RACGAP1Q9H0H5 632 aa6.53□□□□□ -1.36
CUX1-219ENST00000606749 VIPAS39Q9H9C1 493 aa6.53□□□□□ -1.36
CUX1-219ENST00000606749 C20orf141Q9NUB4 165 aa6.53□□□□□ -1.36
CUX1-219ENST00000606749 TAAR3PQ9P1P4 343 aa6.53□□□□□ -1.36
CUX1-219ENST00000606749 RIMS3Q9UJD0 308 aa6.53□□□□□ -1.36
CUX1-219ENST00000606749 FBN3Q75N90 2809 aa6.52□□□□□ -1.37
CUX1-219ENST00000606749 IGLV3-9A0A075B6K5 115 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms