RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 MT-ND1P03886 318 aa17.64■□□□□ 0.41
SHMT1-209ENST00000582653 F13BP05160 661 aa17.64■□□□□ 0.41
SHMT1-209ENST00000582653 ADRA2AP08913 450 aa17.64■□□□□ 0.41
SHMT1-209ENST00000582653 PGA4P0DJD7 388 aa17.64■□□□□ 0.41
SHMT1-209ENST00000582653 PGA3P0DJD8 388 aa17.64■□□□□ 0.41
SHMT1-209ENST00000582653 FUT1P19526 365 aa17.64■□□□□ 0.41
SHMT1-209ENST00000582653 GUCY1A3Q02108 690 aa17.64■□□□□ 0.41
SHMT1-209ENST00000582653 RUNX1T1Q06455 604 aa17.64■□□□□ 0.41
SHMT1-209ENST00000582653 PIWIL3Q7Z3Z3 882 aaKnown RBP17.64■□□□□ 0.41
SHMT1-209ENST00000582653 NANOGNBQ7Z5D8 188 aa17.64■□□□□ 0.41
SHMT1-209ENST00000582653 SLC22A24Q8N4F4 322 aa17.64■□□□□ 0.41
SHMT1-209ENST00000582653 SH3GL3Q99963 347 aa17.64■□□□□ 0.41
SHMT1-209ENST00000582653 MRPL37Q9BZE1 423 aaKnown RBP17.64■□□□□ 0.41
SHMT1-209ENST00000582653 DYNLRB1Q9NP97 96 aa17.64■□□□□ 0.41
SHMT1-209ENST00000582653 C20orf141Q9NUB4 165 aa17.64■□□□□ 0.41
SHMT1-209ENST00000582653 DHHO43323 396 aa17.63■□□□□ 0.41
SHMT1-209ENST00000582653 UBL3O95164 117 aa17.63■□□□□ 0.41
SHMT1-209ENST00000582653 BCL10O95999 233 aa17.63■□□□□ 0.41
SHMT1-209ENST00000582653 QDPRP09417 244 aa17.63■□□□□ 0.41
SHMT1-209ENST00000582653 TACSTD2P09758 323 aa17.63■□□□□ 0.41
SHMT1-209ENST00000582653 SRD5A1P18405 259 aa17.63■□□□□ 0.41
SHMT1-209ENST00000582653 MYBPC1Q00872 1141 aa17.63■□□□□ 0.41
SHMT1-209ENST00000582653 RPL18Q07020 188 aaKnown RBP17.63■□□□□ 0.41
SHMT1-209ENST00000582653 MAPRE2Q15555 327 aa17.63■□□□□ 0.41
SHMT1-209ENST00000582653 CYBRD1Q53TN4 286 aa17.63■□□□□ 0.41
SHMT1-209ENST00000582653 ERICH5Q6P6B1 374 aa17.63■□□□□ 0.41
SHMT1-209ENST00000582653 ZNF584Q8IVC4 421 aa17.63■□□□□ 0.41
SHMT1-209ENST00000582653 UBASH3BQ8TF42 649 aa17.63■□□□□ 0.41
SHMT1-209ENST00000582653 TPK1Q9H3S4 243 aa17.63■□□□□ 0.41
SHMT1-209ENST00000582653 CHODLQ9H9P2 273 aa17.63■□□□□ 0.41
SHMT1-209ENST00000582653 TMEM38BQ9NVV0 291 aa17.63■□□□□ 0.41
SHMT1-209ENST00000582653 ARMCX1Q9P291 453 aa17.63■□□□□ 0.41
SHMT1-209ENST00000582653 GMPR2Q9P2T1 348 aaKnown RBP17.63■□□□□ 0.41
SHMT1-209ENST00000582653 SPEF1Q9Y4P9 236 aa17.63■□□□□ 0.41
SHMT1-209ENST00000582653 LILRA1O75019 489 aa17.62■□□□□ 0.41
SHMT1-209ENST00000582653 OR7A10O76100 309 aa17.62■□□□□ 0.41
SHMT1-209ENST00000582653 OR5F1O95221 314 aa17.62■□□□□ 0.41
SHMT1-209ENST00000582653 OR8G3PP0DMU2 310 aa17.62■□□□□ 0.41
SHMT1-209ENST00000582653 KDELR2P33947 212 aa17.62■□□□□ 0.41
SHMT1-209ENST00000582653 GLRXP35754 106 aa17.62■□□□□ 0.41
SHMT1-209ENST00000582653 AQP2P41181 271 aa17.62■□□□□ 0.41
SHMT1-209ENST00000582653 LRRC23Q53EV4 343 aaPredicted RBP17.62■□□□□ 0.41
SHMT1-209ENST00000582653 LRP11Q86VZ4 500 aa17.62■□□□□ 0.41
SHMT1-209ENST00000582653 POU5F2Q8N7G0 328 aa17.62■□□□□ 0.41
SHMT1-209ENST00000582653 PCYOX1LQ8NBM8 494 aa17.62■□□□□ 0.41
SHMT1-209ENST00000582653 TMEM239Q8WW34 195 aa17.62■□□□□ 0.41
SHMT1-209ENST00000582653 MRPL24Q96A35 216 aaKnown RBP17.62■□□□□ 0.41
SHMT1-209ENST00000582653 SGTBQ96EQ0 304 aa17.62■□□□□ 0.41
SHMT1-209ENST00000582653 TPD52L3Q96J77 140 aa17.62■□□□□ 0.41
SHMT1-209ENST00000582653 ZNF347Q96SE7 839 aa17.62■□□□□ 0.41
SHMT1-209ENST00000582653 MRGBPQ9NV56 204 aa17.62■□□□□ 0.41
SHMT1-209ENST00000582653 GID8Q9NWU2 228 aa17.62■□□□□ 0.41
SHMT1-209ENST00000582653 FZR1Q9UM11 496 aa17.62■□□□□ 0.41
SHMT1-209ENST00000582653 MALRD1Q5VYJ5 2156 aa17.62■□□□□ 0.41
SHMT1-209ENST00000582653 LRP5LA4QPB2 252 aa17.61■□□□□ 0.41
SHMT1-209ENST00000582653 FAM220BPB1ANY3 271 aa17.61■□□□□ 0.41
SHMT1-209ENST00000582653 LYNX1G3V0Z9 82 aa17.61■□□□□ 0.41
SHMT1-209ENST00000582653 IFNA14P01570 189 aa17.61■□□□□ 0.41
SHMT1-209ENST00000582653 LYNX1P0DP58 116 aa17.61■□□□□ 0.41
SHMT1-209ENST00000582653 FUT4P22083 530 aa17.61■□□□□ 0.41
SHMT1-209ENST00000582653 RBM34P42696 430 aaKnown RBP17.61■□□□□ 0.41
SHMT1-209ENST00000582653 CHN2P52757 468 aa17.61■□□□□ 0.41
SHMT1-209ENST00000582653 CLRN1P58418 232 aa17.61■□□□□ 0.41
SHMT1-209ENST00000582653 RIN1Q13671 783 aa17.61■□□□□ 0.41
SHMT1-209ENST00000582653 GKAP1Q5VSY0 366 aaPredicted RBP17.61■□□□□ 0.41
SHMT1-209ENST00000582653 SYT14Q8NB59 555 aa17.61■□□□□ 0.41
SHMT1-209ENST00000582653 OR2T12Q8NG77 320 aa17.61■□□□□ 0.41
SHMT1-209ENST00000582653 OR4K5Q8NGD3 323 aa17.61■□□□□ 0.41
SHMT1-209ENST00000582653 MOSPD2Q8NHP6 518 aa17.61■□□□□ 0.41
SHMT1-209ENST00000582653 HPS1Q92902 700 aa17.61■□□□□ 0.41
SHMT1-209ENST00000582653 MCHR2Q969V1 340 aa17.61■□□□□ 0.41
SHMT1-209ENST00000582653 RCN3Q96D15 328 aa17.61■□□□□ 0.41
SHMT1-209ENST00000582653 SYT3Q9BQG1 590 aa17.61■□□□□ 0.41
SHMT1-209ENST00000582653 SOX7Q9BT81 388 aa17.61■□□□□ 0.41
SHMT1-209ENST00000582653 MS4A5Q9H3V2 200 aa17.61■□□□□ 0.41
SHMT1-209ENST00000582653 CAPN7Q9Y6W3 813 aa17.61■□□□□ 0.41
SHMT1-209ENST00000582653 STAB1Q9NY15 2570 aa17.6■□□□□ 0.41
SHMT1-209ENST00000582653 A0A1W2PRG6 482 aa17.6■□□□□ 0.41
SHMT1-209ENST00000582653 SYNGR3O43761 229 aa17.6■□□□□ 0.41
SHMT1-209ENST00000582653 PIP5K1CO60331 668 aa17.6■□□□□ 0.41
SHMT1-209ENST00000582653 IGHG1P01857 330 aa17.6■□□□□ 0.41
SHMT1-209ENST00000582653 SERPINA5P05154 406 aa17.6■□□□□ 0.41
SHMT1-209ENST00000582653 TCN1P20061 433 aaPredicted RBP17.6■□□□□ 0.41
SHMT1-209ENST00000582653 HNF1AP20823 631 aa17.6■□□□□ 0.41
SHMT1-209ENST00000582653 GALK2Q01415 458 aa17.6■□□□□ 0.41
SHMT1-209ENST00000582653 LAPTM4AQ15012 233 aa17.6■□□□□ 0.41
SHMT1-209ENST00000582653 FXNQ16595 210 aa17.6■□□□□ 0.41
SHMT1-209ENST00000582653 HIST3H3Q16695 136 aa17.6■□□□□ 0.41
SHMT1-209ENST00000582653 MICU2Q8IYU8 434 aa17.6■□□□□ 0.41
SHMT1-209ENST00000582653 MRPL13Q9BYD1 178 aaKnown RBP17.6■□□□□ 0.41
SHMT1-209ENST00000582653 POLR2J2Q9GZM3 115 aaKnown RBP17.6■□□□□ 0.41
SHMT1-209ENST00000582653 POLR2J3Q9H1A7 115 aaKnown RBP17.6■□□□□ 0.41
SHMT1-209ENST00000582653 RNF121Q9H920 327 aa17.6■□□□□ 0.41
SHMT1-209ENST00000582653 INIPQ9NRY2 104 aa17.6■□□□□ 0.41
SHMT1-209ENST00000582653 CMTM6Q9NX76 183 aa17.6■□□□□ 0.41
SHMT1-209ENST00000582653 MYEF2Q9P2K5 600 aaKnown RBP17.6■□□□□ 0.41
SHMT1-209ENST00000582653 FBXL3Q9UKT7 428 aa17.6■□□□□ 0.41
SHMT1-209ENST00000582653 ELOVL7A1L3X0 281 aa17.59■□□□□ 0.41
SHMT1-209ENST00000582653 MCIDASD6RGH6 385 aa17.59■□□□□ 0.41
SHMT1-209ENST00000582653 TRMUO75648 421 aaKnown RBP17.59■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms