RNA–Protein interactions for RNA: ENST00000558117.1

RTF1-204, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene RTF1, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-204ENST00000558117 OR4K1Q8NGD4 311 aa4.7□□□□□ -1.66
RTF1-204ENST00000558117 OR56B1Q8NGI3 324 aa4.7□□□□□ -1.66
RTF1-204ENST00000558117 OR13C3Q8NGS6 347 aa4.7□□□□□ -1.66
RTF1-204ENST00000558117 NAT14Q8WUY8 206 aa4.7□□□□□ -1.66
RTF1-204ENST00000558117 NELFBQ8WX92 580 aa4.7□□□□□ -1.66
RTF1-204ENST00000558117 FAM46BQ96A09 425 aa4.7□□□□□ -1.66
RTF1-204ENST00000558117 ESAMQ96AP7 390 aa4.7□□□□□ -1.66
RTF1-204ENST00000558117 CFAP36Q96G28 342 aa4.7□□□□□ -1.66
RTF1-204ENST00000558117 FAM71F1Q96KD3 344 aaPredicted RBP4.7□□□□□ -1.66
RTF1-204ENST00000558117 TDRD1Q9BXT4 1180 aaKnown RBP4.7□□□□□ -1.66
RTF1-204ENST00000558117 TRIM15Q9C019 465 aa4.7□□□□□ -1.66
RTF1-204ENST00000558117 NAT10Q9H0A0 1025 aaKnown RBP4.7□□□□□ -1.66
RTF1-204ENST00000558117 UBQLN3Q9H347 655 aa4.7□□□□□ -1.66
RTF1-204ENST00000558117 CDH20Q9HBT6 801 aa4.7□□□□□ -1.66
RTF1-204ENST00000558117 DDX18Q9NVP1 670 aaKnown RBP4.7□□□□□ -1.66
RTF1-204ENST00000558117 RMND1Q9NWS8 449 aa4.7□□□□□ -1.66
RTF1-204ENST00000558117 AIPL1Q9NZN9 384 aa4.7□□□□□ -1.66
RTF1-204ENST00000558117 SNX6Q9UNH7 406 aa4.7□□□□□ -1.66
RTF1-204ENST00000558117 HUWE1Q7Z6Z7 4374 aaKnown RBP4.7□□□□□ -1.66
RTF1-204ENST00000558117 ALMS1Q8TCU4 4167 aa4.69□□□□□ -1.66
RTF1-204ENST00000558117 A0A1W2PNV4 684 aa4.69□□□□□ -1.66
RTF1-204ENST00000558117 K7EIL1 84 aa4.69□□□□□ -1.66
RTF1-204ENST00000558117 NDUFS8O00217 210 aa4.69□□□□□ -1.66
RTF1-204ENST00000558117 DFFAO00273 331 aa4.69□□□□□ -1.66
RTF1-204ENST00000558117 ARPC2O15144 300 aa4.69□□□□□ -1.66
RTF1-204ENST00000558117 CLOCKO15516 846 aa4.69□□□□□ -1.66
RTF1-204ENST00000558117 GLRA3O75311 464 aa4.69□□□□□ -1.66
RTF1-204ENST00000558117 ANXA5P08758 320 aa4.69□□□□□ -1.66
RTF1-204ENST00000558117 SAGP10523 405 aaPredicted RBP4.69□□□□□ -1.66
RTF1-204ENST00000558117 IRF2P14316 349 aa4.69□□□□□ -1.66
RTF1-204ENST00000558117 TBXA2RP21731 343 aa4.69□□□□□ -1.66
RTF1-204ENST00000558117 PRTN3P24158 256 aa4.69□□□□□ -1.66
RTF1-204ENST00000558117 CD151P48509 253 aa4.69□□□□□ -1.66
RTF1-204ENST00000558117 SSR4P51571 173 aa4.69□□□□□ -1.66
RTF1-204ENST00000558117 SH3BGRP55822 239 aaPredicted RBP4.69□□□□□ -1.66
RTF1-204ENST00000558117 MTCP1P56278 107 aa4.69□□□□□ -1.66
RTF1-204ENST00000558117 RPL26P61254 145 aaKnown RBP4.69□□□□□ -1.66
RTF1-204ENST00000558117 SPIBQ01892 262 aa4.69□□□□□ -1.66
RTF1-204ENST00000558117 MYL5Q02045 173 aa4.69□□□□□ -1.66
RTF1-204ENST00000558117 PPP1R8Q12972 351 aaKnown RBP4.69□□□□□ -1.66
RTF1-204ENST00000558117 TPD52L1Q16890 204 aaPredicted RBP4.69□□□□□ -1.66
RTF1-204ENST00000558117 ZNF658Q5TYW1 1059 aaPredicted RBP4.69□□□□□ -1.66
RTF1-204ENST00000558117 SULT1C3Q6IMI6 304 aa4.69□□□□□ -1.66
RTF1-204ENST00000558117 UGT3A1Q6NUS8 523 aa4.69□□□□□ -1.66
RTF1-204ENST00000558117 TRIM65Q6PJ69 517 aa4.69□□□□□ -1.66
RTF1-204ENST00000558117 BTNL8Q6UX41 500 aa4.69□□□□□ -1.66
RTF1-204ENST00000558117 C17orf107Q6ZR85 190 aa4.69□□□□□ -1.66
RTF1-204ENST00000558117 ARCQ7LC44 396 aa4.69□□□□□ -1.66
RTF1-204ENST00000558117 ASPGQ86U10 573 aa4.69□□□□□ -1.66
RTF1-204ENST00000558117 HOGA1Q86XE5 327 aa4.69□□□□□ -1.66
RTF1-204ENST00000558117 LRRC25Q8N386 305 aaPredicted RBP4.69□□□□□ -1.66
RTF1-204ENST00000558117 NPWQ8N729 165 aa4.69□□□□□ -1.66
RTF1-204ENST00000558117 RNF148Q8N7C7 305 aa4.69□□□□□ -1.66
RTF1-204ENST00000558117 ZNF614Q8N883 585 aa4.69□□□□□ -1.66
RTF1-204ENST00000558117 PLPP5Q8NEB5 264 aa4.69□□□□□ -1.66
RTF1-204ENST00000558117 NFAM1Q8NET5 270 aaPredicted RBP4.69□□□□□ -1.66
RTF1-204ENST00000558117 MUC7Q8TAX7 377 aa4.69□□□□□ -1.66
RTF1-204ENST00000558117 ZPLD1Q8TCW7 415 aa4.69□□□□□ -1.66
RTF1-204ENST00000558117 CKAP2Q8WWK9 683 aa4.69□□□□□ -1.66
RTF1-204ENST00000558117 SELENOMQ8WWX9 145 aa4.69□□□□□ -1.66
RTF1-204ENST00000558117 TSLPQ969D9 159 aa4.69□□□□□ -1.66
RTF1-204ENST00000558117 UCN3Q969E3 161 aa4.69□□□□□ -1.66
RTF1-204ENST00000558117 LRRC58Q96CX6 371 aa4.69□□□□□ -1.66
RTF1-204ENST00000558117 C16orf58Q96GQ5 468 aa4.69□□□□□ -1.66
RTF1-204ENST00000558117 FOXN4Q96NZ1 517 aa4.69□□□□□ -1.66
RTF1-204ENST00000558117 SLC39A3Q9BRY0 314 aa4.69□□□□□ -1.66
RTF1-204ENST00000558117 CLEC7AQ9BXN2 247 aa4.69□□□□□ -1.66
RTF1-204ENST00000558117 DEFB126Q9BYW3 111 aa4.69□□□□□ -1.66
RTF1-204ENST00000558117 OPN3Q9H1Y3 402 aaPredicted RBP4.69□□□□□ -1.66
RTF1-204ENST00000558117 CNOT2Q9NZN8 540 aaKnown RBP4.69□□□□□ -1.66
RTF1-204ENST00000558117 IFNKQ9P0W0 207 aa4.69□□□□□ -1.66
RTF1-204ENST00000558117 ASIC3Q9UHC3 531 aa4.69□□□□□ -1.66
RTF1-204ENST00000558117 RPL26L1Q9UNX3 145 aaKnown RBP4.69□□□□□ -1.66
RTF1-204ENST00000558117 NAALAD2Q9Y3Q0 740 aa4.69□□□□□ -1.66
RTF1-204ENST00000558117 ATG4BQ9Y4P1 393 aa4.69□□□□□ -1.66
RTF1-204ENST00000558117 MAB21L2Q9Y586 359 aa4.69□□□□□ -1.66
RTF1-204ENST00000558117 A0A0J9YVX5 310 aa4.68□□□□□ -1.66
RTF1-204ENST00000558117 ZSCAN5BA6NJL1 495 aa4.68□□□□□ -1.66
RTF1-204ENST00000558117 ERI2A8K979 691 aaKnown RBP4.68□□□□□ -1.66
RTF1-204ENST00000558117 H7C423 109 aa4.68□□□□□ -1.66
RTF1-204ENST00000558117 LANCL1O43813 399 aa4.68□□□□□ -1.66
RTF1-204ENST00000558117 CDK2AP2O75956 126 aa4.68□□□□□ -1.66
RTF1-204ENST00000558117 DUS4LO95620 317 aaKnown RBP4.68□□□□□ -1.66
RTF1-204ENST00000558117 PDHA2P29803 388 aa4.68□□□□□ -1.66
RTF1-204ENST00000558117 PKLRP30613 574 aa4.68□□□□□ -1.66
RTF1-204ENST00000558117 HSD17B3P37058 310 aa4.68□□□□□ -1.66
RTF1-204ENST00000558117 EFNA4P52798 201 aa4.68□□□□□ -1.66
RTF1-204ENST00000558117 OR4D2P58180 307 aa4.68□□□□□ -1.66
RTF1-204ENST00000558117 KCNJ2P63252 427 aa4.68□□□□□ -1.66
RTF1-204ENST00000558117 TPM4P67936 248 aa4.68□□□□□ -1.66
RTF1-204ENST00000558117 SNTB2Q13425 540 aaKnown RBP4.68□□□□□ -1.66
RTF1-204ENST00000558117 ABRAXAS2Q15018 415 aa4.68□□□□□ -1.66
RTF1-204ENST00000558117 NSDHLQ15738 373 aa4.68□□□□□ -1.66
RTF1-204ENST00000558117 TAF9Q16594 264 aa4.68□□□□□ -1.66
RTF1-204ENST00000558117 CTU2Q2VPK5 515 aaKnown RBP4.68□□□□□ -1.66
RTF1-204ENST00000558117 ZNF658BQ4V348 819 aaPredicted RBP4.68□□□□□ -1.66
RTF1-204ENST00000558117 BCL7AQ4VC05 210 aa4.68□□□□□ -1.66
RTF1-204ENST00000558117 CFAP157Q5JU67 520 aa4.68□□□□□ -1.66
RTF1-204ENST00000558117 NCMAPQ5T1S8 102 aa4.68□□□□□ -1.66
RTF1-204ENST00000558117 C16orf87Q6PH81 154 aa4.68□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms