RNA–Protein interactions for RNA: ENST00000541169.1

VPS33A-205, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 4

Gene VPS33A, Length 594 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-205ENST00000541169 FAM169BQ8N8A8 192 aa16.48■□□□□ 0.23
VPS33A-205ENST00000541169 NANOS1Q8WY41 292 aaKnown RBP16.48■□□□□ 0.23
VPS33A-205ENST00000541169 BCL2L2Q92843 193 aaPredicted RBP16.48■□□□□ 0.23
VPS33A-205ENST00000541169 STMN2Q93045 179 aa16.48■□□□□ 0.23
VPS33A-205ENST00000541169 FOXB1Q99853 325 aa16.48■□□□□ 0.23
VPS33A-205ENST00000541169 IFT27Q9BW83 186 aa16.48■□□□□ 0.23
VPS33A-205ENST00000541169 TEX12Q9BXU0 123 aa16.48■□□□□ 0.23
VPS33A-205ENST00000541169 ESRP2Q9H6T0 727 aaKnown RBP16.48■□□□□ 0.23
VPS33A-205ENST00000541169 NTN4Q9HB63 628 aa16.48■□□□□ 0.23
VPS33A-205ENST00000541169 SLC17A5Q9NRA2 495 aa16.48■□□□□ 0.23
VPS33A-205ENST00000541169 KIF17Q9P2E2 1029 aa16.48■□□□□ 0.23
VPS33A-205ENST00000541169 FBXL3Q9UKT7 428 aa16.48■□□□□ 0.23
VPS33A-205ENST00000541169 EDARQ9UNE0 448 aa16.48■□□□□ 0.23
VPS33A-205ENST00000541169 UTP20O75691 2785 aaKnown RBP16.47■□□□□ 0.23
VPS33A-205ENST00000541169 FAM221AA4D161 298 aa16.47■□□□□ 0.23
VPS33A-205ENST00000541169 ARHGEF9O43307 516 aa16.47■□□□□ 0.23
VPS33A-205ENST00000541169 ZNF26P17031 533 aaPredicted RBP16.47■□□□□ 0.23
VPS33A-205ENST00000541169 FXYD6P3P58550 94 aa16.47■□□□□ 0.23
VPS33A-205ENST00000541169 ARF1P84077 181 aaKnown RBP16.47■□□□□ 0.23
VPS33A-205ENST00000541169 LGALS3BPQ08380 585 aa16.47■□□□□ 0.23
VPS33A-205ENST00000541169 CD47Q08722 323 aa16.47■□□□□ 0.23
VPS33A-205ENST00000541169 PPP1R8Q12972 351 aaKnown RBP16.47■□□□□ 0.23
VPS33A-205ENST00000541169 KRR1Q13601 381 aaKnown RBP16.47■□□□□ 0.23
VPS33A-205ENST00000541169 C3orf36Q3SXR2 165 aa16.47■□□□□ 0.23
VPS33A-205ENST00000541169 LRFN4Q6PJG9 635 aa16.47■□□□□ 0.23
VPS33A-205ENST00000541169 LINGO2Q7L985 606 aa16.47■□□□□ 0.23
VPS33A-205ENST00000541169 ATG16L2Q8NAA4 619 aa16.47■□□□□ 0.23
VPS33A-205ENST00000541169 MCHR2Q969V1 340 aa16.47■□□□□ 0.23
VPS33A-205ENST00000541169 GTPBP3Q969Y2 492 aaKnown RBP16.47■□□□□ 0.23
VPS33A-205ENST00000541169 ERMAPQ96PL5 475 aaPredicted RBP16.47■□□□□ 0.23
VPS33A-205ENST00000541169 ADAM18Q9Y3Q7 739 aa16.47■□□□□ 0.23
VPS33A-205ENST00000541169 IER3IP1Q9Y5U9 82 aa16.47■□□□□ 0.23
VPS33A-205ENST00000541169 SLC25A15Q9Y619 301 aa16.47■□□□□ 0.23
VPS33A-205ENST00000541169 ASH1LQ9NR48 2969 aaKnown RBP16.47■□□□□ 0.23
VPS33A-205ENST00000541169 PKDREJQ9NTG1 2253 aa16.46■□□□□ 0.23
VPS33A-205ENST00000541169 PRSS37A4D1T9 235 aa16.46■□□□□ 0.23
VPS33A-205ENST00000541169 OR8G3PP0DMU2 310 aa16.46■□□□□ 0.23
VPS33A-205ENST00000541169 CDH2P19022 906 aaPredicted RBP16.46■□□□□ 0.23
VPS33A-205ENST00000541169 CRABP1P29762 137 aa16.46■□□□□ 0.23
VPS33A-205ENST00000541169 IST1P53990 364 aa16.46■□□□□ 0.23
VPS33A-205ENST00000541169 SNTB1Q13884 538 aaKnown RBP16.46■□□□□ 0.23
VPS33A-205ENST00000541169 TSC22D1Q15714 1073 aa16.46■□□□□ 0.23
VPS33A-205ENST00000541169 TBRG1Q3YBR2 411 aa16.46■□□□□ 0.23
VPS33A-205ENST00000541169 C9orf135Q5VTT2 229 aa16.46■□□□□ 0.23
VPS33A-205ENST00000541169 ZNF787Q6DD87 383 aa16.46■□□□□ 0.23
VPS33A-205ENST00000541169 DNM1P34Q6PK57 102 aa16.46■□□□□ 0.23
VPS33A-205ENST00000541169 TMEM108Q6UXF1 575 aa16.46■□□□□ 0.23
VPS33A-205ENST00000541169 THSD4Q6ZMP0 1018 aa16.46■□□□□ 0.23
VPS33A-205ENST00000541169 JAZF1Q86VZ6 243 aa16.46■□□□□ 0.23
VPS33A-205ENST00000541169 PARP8Q8N3A8 854 aa16.46■□□□□ 0.23
VPS33A-205ENST00000541169 LNX2Q8N448 690 aa16.46■□□□□ 0.23
VPS33A-205ENST00000541169 SYT14Q8NB59 555 aa16.46■□□□□ 0.23
VPS33A-205ENST00000541169 OR2T33Q8NG76 320 aa16.46■□□□□ 0.23
VPS33A-205ENST00000541169 TEX47Q8TBZ9 253 aa16.46■□□□□ 0.23
VPS33A-205ENST00000541169 PYDC1Q8WXC3 89 aa16.46■□□□□ 0.23
VPS33A-205ENST00000541169 HDAC2Q92769 488 aaKnown RBP16.46■□□□□ 0.23
VPS33A-205ENST00000541169 RADILQ96JH8 1075 aa16.46■□□□□ 0.23
VPS33A-205ENST00000541169 SAMD8Q96LT4 415 aa16.46■□□□□ 0.23
VPS33A-205ENST00000541169 Q96M85 177 aa16.46■□□□□ 0.23
VPS33A-205ENST00000541169 WACQ9BTA9 647 aa16.46■□□□□ 0.23
VPS33A-205ENST00000541169 TBC1D23Q9NUY8 699 aa16.46■□□□□ 0.23
VPS33A-205ENST00000541169 HECTD1Q9ULT8 2610 aa16.45■□□□□ 0.22
VPS33A-205ENST00000541169 TEX13CA0A0J9YWL9 993 aa16.45■□□□□ 0.22
VPS33A-205ENST00000541169 CTAG2O75638 210 aa16.45■□□□□ 0.22
VPS33A-205ENST00000541169 THBDP07204 575 aa16.45■□□□□ 0.22
VPS33A-205ENST00000541169 OSMP13725 252 aa16.45■□□□□ 0.22
VPS33A-205ENST00000541169 ZNF23P17027 643 aa16.45■□□□□ 0.22
VPS33A-205ENST00000541169 MRPS34P82930 218 aaKnown RBP16.45■□□□□ 0.22
VPS33A-205ENST00000541169 TLE4Q04727 773 aa16.45■□□□□ 0.22
VPS33A-205ENST00000541169 RUNX1T1Q06455 604 aa16.45■□□□□ 0.22
VPS33A-205ENST00000541169 PHYHD1Q5SRE7 291 aa16.45■□□□□ 0.22
VPS33A-205ENST00000541169 FBXW10Q5XX13 1052 aa16.45■□□□□ 0.22
VPS33A-205ENST00000541169 FAHD1Q6P587 224 aa16.45■□□□□ 0.22
VPS33A-205ENST00000541169 ZNF813Q6ZN06 617 aa16.45■□□□□ 0.22
VPS33A-205ENST00000541169 TMEM179BQ7Z7N9 219 aa16.45■□□□□ 0.22
VPS33A-205ENST00000541169 ZNF295-AS1Q8N0V1 137 aa16.45■□□□□ 0.22
VPS33A-205ENST00000541169 LRTOMTQ8WZ04 291 aa16.45■□□□□ 0.22
VPS33A-205ENST00000541169 NMD3Q96D46 503 aaKnown RBP16.45■□□□□ 0.22
VPS33A-205ENST00000541169 ZC3HAV1LQ96H79 300 aaKnown RBP16.45■□□□□ 0.22
VPS33A-205ENST00000541169 NIPSNAP1Q9BPW8 284 aa16.45■□□□□ 0.22
VPS33A-205ENST00000541169 GABARAPL1Q9H0R8 117 aa16.45■□□□□ 0.22
VPS33A-205ENST00000541169 KCNN2Q9H2S1 579 aa16.45■□□□□ 0.22
VPS33A-205ENST00000541169 RASSF1Q9NS23 344 aa16.45■□□□□ 0.22
VPS33A-205ENST00000541169 TMEM38BQ9NVV0 291 aa16.45■□□□□ 0.22
VPS33A-205ENST00000541169 VSX1Q9NZR4 365 aaPredicted RBP16.45■□□□□ 0.22
VPS33A-205ENST00000541169 SLC22A23A1A5C7 686 aa16.44■□□□□ 0.22
VPS33A-205ENST00000541169 H3BN98 237 aa16.44■□□□□ 0.22
VPS33A-205ENST00000541169 BHLHE40O14503 412 aa16.44■□□□□ 0.22
VPS33A-205ENST00000541169 PPP1R3DO95685 299 aa16.44■□□□□ 0.22
VPS33A-205ENST00000541169 RENP00797 406 aa16.44■□□□□ 0.22
VPS33A-205ENST00000541169 PTAFRP25105 342 aa16.44■□□□□ 0.22
VPS33A-205ENST00000541169 ARR3P36575 388 aa16.44■□□□□ 0.22
VPS33A-205ENST00000541169 FOXG1P55316 489 aaPredicted RBP16.44■□□□□ 0.22
VPS33A-205ENST00000541169 ESRRGP62508 458 aa16.44■□□□□ 0.22
VPS33A-205ENST00000541169 MESTQ5EB52 335 aa16.44■□□□□ 0.22
VPS33A-205ENST00000541169 SLC25A47Q6Q0C1 308 aa16.44■□□□□ 0.22
VPS33A-205ENST00000541169 WFDC8Q8IUA0 241 aa16.44■□□□□ 0.22
VPS33A-205ENST00000541169 WDR31Q8NA23 367 aa16.44■□□□□ 0.22
VPS33A-205ENST00000541169 IL17RDQ8NFM7 739 aa16.44■□□□□ 0.22
VPS33A-205ENST00000541169 EGLN3Q9H6Z9 239 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms