RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	ANGPT4	Q9Y264	503 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	RAI2	Q9Y5P3	530 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	COLEC10	Q9Y6Z7	277 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	CACNA1I	Q9P0X4	2223 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	TP53BP1	Q12888	1972 aa	Predicted RBP	5.05	□□□□□ -1.6
CD44-231	ENST00000531110	SHANK3	Q9BYB0	1731 aa		5.05	□□□□□ -1.6
CD44-231	ENST00000531110	COL5A2	P05997	1499 aa	Predicted RBP	5.05	□□□□□ -1.6
CD44-231	ENST00000531110	SPATA31D1	Q6ZQQ2	1576 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	SH2D7	A6NKC9	451 aa	Predicted RBP	5.04	□□□□□ -1.6
CD44-231	ENST00000531110	HSPB2	A8KAH6	182 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	SUPT3H	B4E1H0	165 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	ZNF587B	E7ETH6	402 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	EI24	O14681	340 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	KLK10	O43240	276 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	PRAF2	O60831	178 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	DNAJB6	O75190	326 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	B3GAT3	O94766	335 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	FGF19	O95750	216 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	CD2	P06729	351 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	ANXA4	P09525	319 aa	Predicted RBP	5.04	□□□□□ -1.6
CD44-231	ENST00000531110	GKN3P	P0CG01	181 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	HSD17B1	P14061	328 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	KCNE1	P15382	129 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	GNLY	P22749	145 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	DPP4	P27487	766 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	HTR2A	P28223	471 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	DCTD	P32321	178 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	TIMP3	P35625	211 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	GLP1R	P43220	463 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	MAGEA12	P43365	314 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	RFX5	P48382	616 aa	Predicted RBP	5.04	□□□□□ -1.6
CD44-231	ENST00000531110	BLK	P51451	505 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	EFNA3	P52797	238 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	HCCS	P53701	268 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	ERVFC1-1	P60608	527 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	RAB8A	P61006	207 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	LSM6	P62312	80 aa	Known RBP	5.04	□□□□□ -1.6
CD44-231	ENST00000531110	SNRPD2	P62316	118 aa	Known RBP	5.04	□□□□□ -1.6
CD44-231	ENST00000531110	FOXM1	Q08050	763 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	PDZK1IP1	Q13113	114 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	TSTA3	Q13630	321 aa	Predicted RBP	5.04	□□□□□ -1.6
CD44-231	ENST00000531110	CEACAM7	Q14002	265 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	SERTAD2	Q14140	314 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	JOSD1	Q15040	202 aa	Predicted RBP	5.04	□□□□□ -1.6
CD44-231	ENST00000531110	ARL6IP1	Q15041	203 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	FAM189A2	Q15884	450 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	HSPB2	Q16082	182 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	MEST	Q5EB52	335 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	PRAMEF19	Q5SWL8	479 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	TRIQK	Q629K1	86 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	FAM45BP	Q6NSW5	357 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	CES5A	Q6NT32	575 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	FIGLA	Q6QHK4	219 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	TIFAB	Q6ZNK6	161 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	MOB3C	Q70IA8	216 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	TMUB2	Q71RG4	321 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	TSPAN33	Q86UF1	283 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	VRK2	Q86Y07	508 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	SNX29P2	Q8IUI4	249 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	KDM8	Q8N371	416 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	CBR4	Q8N4T8	237 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	FRMD1	Q8N878	549 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	C9orf106	Q8NAJ2	232 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	ATP6V1C2	Q8NEY4	427 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	OR4N2	Q8NGD1	307 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	OR56A4	Q8NGH8	313 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	OR2G2	Q8NGZ5	317 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	OR4Q3	Q8NH05	313 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	OR51F2	Q8NH61	342 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	COQ8A	Q8NI60	647 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	FAM45A	Q8TCE6	357 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	RNASE8	Q8TDE3	154 aa	Known RBP	5.04	□□□□□ -1.6
CD44-231	ENST00000531110	RAB40A	Q8WXH6	277 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	UCN3	Q969E3	161 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	SLCO4A1	Q96BD0	722 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	ROPN1L	Q96C74	230 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	SCRN2	Q96FV2	425 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	EEF2KMT	Q96G04	330 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	MBOAT7	Q96N66	472 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	ALKBH3	Q96Q83	286 aa	Predicted RBP	5.04	□□□□□ -1.6
CD44-231	ENST00000531110	GAL3ST4	Q96RP7	486 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	KLF6	Q99612	283 aa	Predicted RBP	5.04	□□□□□ -1.6
CD44-231	ENST00000531110	OMD	Q99983	421 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	C7orf50	Q9BRJ6	194 aa	Known RBP	5.04	□□□□□ -1.6
CD44-231	ENST00000531110	UTP23	Q9BRU9	249 aa	Known RBP	5.04	□□□□□ -1.6
CD44-231	ENST00000531110	URM1	Q9BTM9	101 aa	Known RBP	5.04	□□□□□ -1.6
CD44-231	ENST00000531110	FTHL17	Q9BXU8	183 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	IL22	Q9GZX6	179 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	MED28	Q9H204	178 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	OR2AG1	Q9H205	316 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	PORCN	Q9H237	461 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	LMAN1L	Q9HAT1	526 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	MS4A12	Q9NXJ0	267 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	RCC2	Q9P258	522 aa	Known RBP	5.04	□□□□□ -1.6
CD44-231	ENST00000531110	PAK5	Q9P286	719 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	COPS7A	Q9UBW8	275 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	HSPB7	Q9UBY9	170 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	DKKL1	Q9UK85	242 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	FBXL3	Q9UKT7	428 aa		5.04	□□□□□ -1.6
CD44-231	ENST00000531110	PPP1R3C	Q9UQK1	317 aa		5.04	□□□□□ -1.6

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