RNA–Protein interactions for RNA: ENST00000489352.5

HDAC6-233, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 585 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-233ENST00000489352 MSL2Q9HCI7 577 aa9.54□□□□□ -0.88
HDAC6-233ENST00000489352 GPATCH2Q9NW75 528 aa9.54□□□□□ -0.88
HDAC6-233ENST00000489352 ZNF224Q9NZL3 707 aa9.54□□□□□ -0.88
HDAC6-233ENST00000489352 EIF3KQ9UBQ5 218 aaKnown RBP9.54□□□□□ -0.88
HDAC6-233ENST00000489352 TBK1Q9UHD2 729 aa9.54□□□□□ -0.88
HDAC6-233ENST00000489352 WDR45Q9Y484 360 aa9.54□□□□□ -0.88
HDAC6-233ENST00000489352 HERC2O95714 4834 aa9.54□□□□□ -0.88
HDAC6-233ENST00000489352 SURF4O15260 269 aa9.53□□□□□ -0.88
HDAC6-233ENST00000489352 CFLARO15519 480 aa9.53□□□□□ -0.88
HDAC6-233ENST00000489352 ANGPTL7O43827 346 aa9.53□□□□□ -0.88
HDAC6-233ENST00000489352 TBX19O60806 448 aa9.53□□□□□ -0.88
HDAC6-233ENST00000489352 PEX14O75381 377 aa9.53□□□□□ -0.88
HDAC6-233ENST00000489352 CRCPO75575 148 aa9.53□□□□□ -0.88
HDAC6-233ENST00000489352 SEC31AO94979 1220 aaKnown RBP9.53□□□□□ -0.88
HDAC6-233ENST00000489352 SNAP29O95721 258 aa9.53□□□□□ -0.88
HDAC6-233ENST00000489352 PAHP00439 452 aa9.53□□□□□ -0.88
HDAC6-233ENST00000489352 CD28P10747 220 aa9.53□□□□□ -0.88
HDAC6-233ENST00000489352 MATN1P21941 496 aa9.53□□□□□ -0.88
HDAC6-233ENST00000489352 APLNRP35414 380 aa9.53□□□□□ -0.88
HDAC6-233ENST00000489352 PKNOX1P55347 436 aa9.53□□□□□ -0.88
HDAC6-233ENST00000489352 ETF1P62495 437 aaKnown RBP9.53□□□□□ -0.88
HDAC6-233ENST00000489352 BNIP2Q12982 314 aa9.53□□□□□ -0.88
HDAC6-233ENST00000489352 NAB1Q13506 487 aa9.53□□□□□ -0.88
HDAC6-233ENST00000489352 CHI3L2Q15782 390 aa9.53□□□□□ -0.88
HDAC6-233ENST00000489352 UAP1Q16222 522 aaPredicted RBP9.53□□□□□ -0.88
HDAC6-233ENST00000489352 GSTA3Q16772 222 aa9.53□□□□□ -0.88
HDAC6-233ENST00000489352 LSM12Q3MHD2 195 aaKnown RBP9.53□□□□□ -0.88
HDAC6-233ENST00000489352 SPRNQ5BIV9 151 aa9.53□□□□□ -0.88
HDAC6-233ENST00000489352 PHYHD1Q5SRE7 291 aa9.53□□□□□ -0.88
HDAC6-233ENST00000489352 ATAD3BQ5T9A4 648 aa9.53□□□□□ -0.88
HDAC6-233ENST00000489352 CD276Q5ZPR3 534 aa9.53□□□□□ -0.88
HDAC6-233ENST00000489352 ADAMTSL5Q6ZMM2 481 aa9.53□□□□□ -0.88
HDAC6-233ENST00000489352 ZNF627Q7L945 461 aa9.53□□□□□ -0.88
HDAC6-233ENST00000489352 OLIG3Q7RTU3 272 aa9.53□□□□□ -0.88
HDAC6-233ENST00000489352 LSRQ86X29 649 aaPredicted RBP9.53□□□□□ -0.88
HDAC6-233ENST00000489352 VRK2Q86Y07 508 aa9.53□□□□□ -0.88
HDAC6-233ENST00000489352 SKA3Q8IX90 412 aa9.53□□□□□ -0.88
HDAC6-233ENST00000489352 PDZD9Q8IXQ8 264 aa9.53□□□□□ -0.88
HDAC6-233ENST00000489352 C20orf196Q8IYI0 205 aa9.53□□□□□ -0.88
HDAC6-233ENST00000489352 PAPD5Q8NDF8 572 aaKnown RBP9.53□□□□□ -0.88
HDAC6-233ENST00000489352 WDFY2Q96P53 400 aa9.53□□□□□ -0.88
HDAC6-233ENST00000489352 TSSK3Q96PN8 268 aa9.53□□□□□ -0.88
HDAC6-233ENST00000489352 KCNA7Q96RP8 456 aa9.53□□□□□ -0.88
HDAC6-233ENST00000489352 ASCL2Q99929 193 aa9.53□□□□□ -0.88
HDAC6-233ENST00000489352 MRPL57Q9BQC6 102 aaKnown RBP9.53□□□□□ -0.88
HDAC6-233ENST00000489352 C1QTNF3Q9BXJ4 246 aa9.53□□□□□ -0.88
HDAC6-233ENST00000489352 ZMAT5Q9UDW3 170 aaKnown RBP9.53□□□□□ -0.88
HDAC6-233ENST00000489352 CFAP73A6NFT4 308 aa9.52□□□□□ -0.89
HDAC6-233ENST00000489352 ZNF726A6NNF4 738 aa9.52□□□□□ -0.89
HDAC6-233ENST00000489352 A8MT66 165 aa9.52□□□□□ -0.89
HDAC6-233ENST00000489352 TMEM178BH3BS89 294 aa9.52□□□□□ -0.89
HDAC6-233ENST00000489352 JTBO76095 146 aa9.52□□□□□ -0.89
HDAC6-233ENST00000489352 MFN2O95140 757 aa9.52□□□□□ -0.89
HDAC6-233ENST00000489352 ZNF205O95201 554 aa9.52□□□□□ -0.89
HDAC6-233ENST00000489352 FARS2O95363 451 aaKnown RBP9.52□□□□□ -0.89
HDAC6-233ENST00000489352 AHSA1O95433 338 aa9.52□□□□□ -0.89
HDAC6-233ENST00000489352 PNMTP11086 282 aa9.52□□□□□ -0.89
HDAC6-233ENST00000489352 FAHP16930 419 aa9.52□□□□□ -0.89
HDAC6-233ENST00000489352 TAC1P20366 129 aa9.52□□□□□ -0.89
HDAC6-233ENST00000489352 MAPK1P28482 360 aa9.52□□□□□ -0.89
HDAC6-233ENST00000489352 SOAT1P35610 550 aa9.52□□□□□ -0.89
HDAC6-233ENST00000489352 ANXA11P50995 505 aaKnown RBP9.52□□□□□ -0.89
HDAC6-233ENST00000489352 MMP16P51512 607 aa9.52□□□□□ -0.89
HDAC6-233ENST00000489352 COPZ1P61923 177 aa9.52□□□□□ -0.89
HDAC6-233ENST00000489352 RPS26P62854 115 aaKnown RBP9.52□□□□□ -0.89
HDAC6-233ENST00000489352 EGFEM1PQ0D2K5 195 aa9.52□□□□□ -0.89
HDAC6-233ENST00000489352 TMEM139Q8IV31 216 aa9.52□□□□□ -0.89
HDAC6-233ENST00000489352 TMEM123Q8N131 208 aa9.52□□□□□ -0.89
HDAC6-233ENST00000489352 HIPK4Q8NE63 616 aa9.52□□□□□ -0.89
HDAC6-233ENST00000489352 OR2Z1Q8NG97 314 aa9.52□□□□□ -0.89
HDAC6-233ENST00000489352 OR5AK3PQ8NH89 298 aa9.52□□□□□ -0.89
HDAC6-233ENST00000489352 CLHC1Q8NHS4 586 aa9.52□□□□□ -0.89
HDAC6-233ENST00000489352 VANGL1Q8TAA9 524 aaPredicted RBP9.52□□□□□ -0.89
HDAC6-233ENST00000489352 CNOT9Q92600 299 aaKnown RBP9.52□□□□□ -0.89
HDAC6-233ENST00000489352 MTERF3Q96E29 417 aa9.52□□□□□ -0.89
HDAC6-233ENST00000489352 LRR1Q96L50 414 aa9.52□□□□□ -0.89
HDAC6-233ENST00000489352 CITED2Q99967 270 aaPredicted RBP9.52□□□□□ -0.89
HDAC6-233ENST00000489352 CDADC1Q9BWV3 514 aa9.52□□□□□ -0.89
HDAC6-233ENST00000489352 ZNF350Q9GZX5 532 aa9.52□□□□□ -0.89
HDAC6-233ENST00000489352 MRPL46Q9H2W6 279 aaKnown RBP9.52□□□□□ -0.89
HDAC6-233ENST00000489352 ZNRD1Q9P1U0 126 aa9.52□□□□□ -0.89
HDAC6-233ENST00000489352 JRKLQ9Y4A0 524 aa9.52□□□□□ -0.89
HDAC6-233ENST00000489352 A0A1W2PRX2 142 aa9.51□□□□□ -0.89
HDAC6-233ENST00000489352 IFNL4K9M1U5 179 aa9.51□□□□□ -0.89
HDAC6-233ENST00000489352 PHYHO14832 338 aa9.51□□□□□ -0.89
HDAC6-233ENST00000489352 TIMM8AO60220 97 aaPredicted RBP9.51□□□□□ -0.89
HDAC6-233ENST00000489352 CLIC3O95833 236 aa9.51□□□□□ -0.89
HDAC6-233ENST00000489352 MPV17P39210 176 aa9.51□□□□□ -0.89
HDAC6-233ENST00000489352 HPCAP84074 193 aa9.51□□□□□ -0.89
HDAC6-233ENST00000489352 DR1Q01658 176 aa9.51□□□□□ -0.89
HDAC6-233ENST00000489352 GNA13Q14344 377 aa9.51□□□□□ -0.89
HDAC6-233ENST00000489352 XKR7Q5GH72 579 aa9.51□□□□□ -0.89
HDAC6-233ENST00000489352 ZNF678Q5SXM1 525 aa9.51□□□□□ -0.89
HDAC6-233ENST00000489352 WDR25Q64LD2 544 aaPredicted RBP9.51□□□□□ -0.89
HDAC6-233ENST00000489352 UNQ9370/PRO34162Q6UXP9 181 aa9.51□□□□□ -0.89
HDAC6-233ENST00000489352 ZER1Q7Z7L7 766 aa9.51□□□□□ -0.89
HDAC6-233ENST00000489352 HMGN2P46Q86SG4 172 aa9.51□□□□□ -0.89
HDAC6-233ENST00000489352 CADM2Q8N3J6 435 aa9.51□□□□□ -0.89
HDAC6-233ENST00000489352 PNLDC1Q8NA58 520 aaKnown RBP9.51□□□□□ -0.89
HDAC6-233ENST00000489352 MFSD8Q8NHS3 518 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms