RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 UTS2BQ765I0 119 aa1.28□□□□□ -2.2
VPS50-216ENST00000484954 CCDC50Q8IVM0 306 aa1.28□□□□□ -2.2
VPS50-216ENST00000484954 GATSQ8NAP1 163 aa1.28□□□□□ -2.2
VPS50-216ENST00000484954 FAM110BQ8TC76 370 aa1.28□□□□□ -2.2
VPS50-216ENST00000484954 TM4SF18Q96CE8 201 aa1.28□□□□□ -2.2
VPS50-216ENST00000484954 NARS2Q96I59 477 aaKnown RBP1.28□□□□□ -2.2
VPS50-216ENST00000484954 MS4A4EQ96PG1 132 aa1.28□□□□□ -2.2
VPS50-216ENST00000484954 DOK1Q99704 481 aa1.28□□□□□ -2.2
VPS50-216ENST00000484954 FAIM2Q9BWQ8 316 aa1.28□□□□□ -2.2
VPS50-216ENST00000484954 TEKT3Q9BXF9 490 aa1.28□□□□□ -2.2
VPS50-216ENST00000484954 MCCC2Q9HCC0 563 aa1.28□□□□□ -2.2
VPS50-216ENST00000484954 POLE3Q9NRF9 147 aa1.28□□□□□ -2.2
VPS50-216ENST00000484954 EXD2Q9NVH0 621 aa1.28□□□□□ -2.2
VPS50-216ENST00000484954 PTPRTO14522 1441 aa1.28□□□□□ -2.2
VPS50-216ENST00000484954 LTBP4Q8N2S1 1624 aa1.28□□□□□ -2.2
VPS50-216ENST00000484954 CENPJQ9HC77 1338 aaPredicted RBP1.27□□□□□ -2.21
VPS50-216ENST00000484954 CCDC182A6NF36 153 aa1.27□□□□□ -2.21
VPS50-216ENST00000484954 HIDE1A8MVS5 230 aa1.27□□□□□ -2.21
VPS50-216ENST00000484954 MED7O43513 233 aa1.27□□□□□ -2.21
VPS50-216ENST00000484954 MFN2O95140 757 aa1.27□□□□□ -2.21
VPS50-216ENST00000484954 FABP3P05413 133 aa1.27□□□□□ -2.21
VPS50-216ENST00000484954 KRT8P05787 483 aa1.27□□□□□ -2.21
VPS50-216ENST00000484954 GNAO1P09471 354 aa1.27□□□□□ -2.21
VPS50-216ENST00000484954 IQCF3P0C7M6 154 aa1.27□□□□□ -2.21
VPS50-216ENST00000484954 EPB41P11171 864 aaKnown RBP1.27□□□□□ -2.21
VPS50-216ENST00000484954 SLC2A5P22732 501 aa1.27□□□□□ -2.21
VPS50-216ENST00000484954 CSNK1A1P48729 337 aa1.27□□□□□ -2.21
VPS50-216ENST00000484954 CDH4P55283 916 aa1.27□□□□□ -2.21
VPS50-216ENST00000484954 POLR2FP61218 127 aaKnown RBP1.27□□□□□ -2.21
VPS50-216ENST00000484954 ELP6Q0PNE2 266 aa1.27□□□□□ -2.21
VPS50-216ENST00000484954 TATDN3Q17R31 274 aa1.27□□□□□ -2.21
VPS50-216ENST00000484954 BHLHA15Q7RTS1 189 aaPredicted RBP1.27□□□□□ -2.21
VPS50-216ENST00000484954 PUSL1Q8N0Z8 303 aaKnown RBP1.27□□□□□ -2.21
VPS50-216ENST00000484954 PYROXD1Q8WU10 500 aa1.27□□□□□ -2.21
VPS50-216ENST00000484954 DTNBP1Q96EV8 351 aa1.27□□□□□ -2.21
VPS50-216ENST00000484954 TSGA13Q96PP4 275 aa1.27□□□□□ -2.21
VPS50-216ENST00000484954 CLCC1Q96S66 551 aa1.27□□□□□ -2.21
VPS50-216ENST00000484954 ZNF382Q96SR6 550 aa1.27□□□□□ -2.21
VPS50-216ENST00000484954 MRPL37Q9BZE1 423 aaKnown RBP1.27□□□□□ -2.21
VPS50-216ENST00000484954 RAB33BQ9H082 229 aa1.27□□□□□ -2.21
VPS50-216ENST00000484954 RWDD1Q9H446 243 aaPredicted RBP1.27□□□□□ -2.21
VPS50-216ENST00000484954 MRPL47Q9HD33 250 aaKnown RBP1.27□□□□□ -2.21
VPS50-216ENST00000484954 PIPOXQ9P0Z9 390 aa1.27□□□□□ -2.21
VPS50-216ENST00000484954 ZNF391Q9UJN7 358 aa1.27□□□□□ -2.21
VPS50-216ENST00000484954 RPH3ALQ9UNE2 315 aa1.27□□□□□ -2.21
VPS50-216ENST00000484954 MRPS18BQ9Y676 258 aaKnown RBP1.27□□□□□ -2.21
VPS50-216ENST00000484954 METTL21EPA6NDL7 271 aa1.26□□□□□ -2.21
VPS50-216ENST00000484954 C16orf90A8MZG2 172 aa1.26□□□□□ -2.21
VPS50-216ENST00000484954 POLR2DO15514 142 aaKnown RBP1.26□□□□□ -2.21
VPS50-216ENST00000484954 TOM1O60784 492 aa1.26□□□□□ -2.21
VPS50-216ENST00000484954 GCM2O75603 506 aaPredicted RBP1.26□□□□□ -2.21
VPS50-216ENST00000484954 OR56A5P0C7T3 313 aa1.26□□□□□ -2.21
VPS50-216ENST00000484954 ZNF806P0C7X5 589 aa1.26□□□□□ -2.21
VPS50-216ENST00000484954 TCN1P20061 433 aaPredicted RBP1.26□□□□□ -2.21
VPS50-216ENST00000484954 RORAP35398 523 aa1.26□□□□□ -2.21
VPS50-216ENST00000484954 RPL13AP40429 203 aaKnown RBP1.26□□□□□ -2.21
VPS50-216ENST00000484954 OPRD1P41143 372 aa1.26□□□□□ -2.21
VPS50-216ENST00000484954 OPRK1P41145 380 aa1.26□□□□□ -2.21
VPS50-216ENST00000484954 CDKN2BP42772 138 aa1.26□□□□□ -2.21
VPS50-216ENST00000484954 PIGHQ14442 188 aaPredicted RBP1.26□□□□□ -2.21
VPS50-216ENST00000484954 PRPSAP1Q14558 356 aa1.26□□□□□ -2.21
VPS50-216ENST00000484954 TTC23Q5W5X9 447 aa1.26□□□□□ -2.21
VPS50-216ENST00000484954 TRIM40Q6P9F5 258 aa1.26□□□□□ -2.21
VPS50-216ENST00000484954 TMEM205Q6UW68 189 aa1.26□□□□□ -2.21
VPS50-216ENST00000484954 ANKFN1Q8N957 763 aa1.26□□□□□ -2.21
VPS50-216ENST00000484954 ZNF557Q8N988 423 aaPredicted RBP1.26□□□□□ -2.21
VPS50-216ENST00000484954 OR2T34Q8NGX1 318 aa1.26□□□□□ -2.21
VPS50-216ENST00000484954 CIRBP-AS1Q8TBR5 109 aa1.26□□□□□ -2.21
VPS50-216ENST00000484954 CCDC110Q8TBZ0 833 aa1.26□□□□□ -2.21
VPS50-216ENST00000484954 TRMT10AQ8TBZ6 339 aaKnown RBP1.26□□□□□ -2.21
VPS50-216ENST00000484954 UBE2Q2Q8WVN8 375 aa1.26□□□□□ -2.21
VPS50-216ENST00000484954 CXorf40BQ96DE9 158 aa1.26□□□□□ -2.21
VPS50-216ENST00000484954 SLC38A2Q96QD8 506 aa1.26□□□□□ -2.21
VPS50-216ENST00000484954 RARRES2Q99969 163 aa1.26□□□□□ -2.21
VPS50-216ENST00000484954 SULT4A1Q9BR01 284 aa1.26□□□□□ -2.21
VPS50-216ENST00000484954 OSBPL10Q9BXB5 764 aa1.26□□□□□ -2.21
VPS50-216ENST00000484954 ZNF717Q9BY31 904 aaPredicted RBP1.26□□□□□ -2.21
VPS50-216ENST00000484954 SYNDIG1Q9H7V2 258 aa1.26□□□□□ -2.21
VPS50-216ENST00000484954 UBE2ZQ9H832 354 aaPredicted RBP1.26□□□□□ -2.21
VPS50-216ENST00000484954 ISYNA1Q9NPH2 558 aa1.26□□□□□ -2.21
VPS50-216ENST00000484954 SLC35D1Q9NTN3 355 aa1.26□□□□□ -2.21
VPS50-216ENST00000484954 UFSP2Q9NUQ7 469 aa1.26□□□□□ -2.21
VPS50-216ENST00000484954 ATP6V0A2Q9Y487 856 aa1.26□□□□□ -2.21
VPS50-216ENST00000484954 ADAMTS13Q76LX8 1427 aa1.25□□□□□ -2.21
VPS50-216ENST00000484954 RPAP1Q9BWH6 1393 aaPredicted RBP1.25□□□□□ -2.21
VPS50-216ENST00000484954 ANGPT2O15123 496 aa1.25□□□□□ -2.21
VPS50-216ENST00000484954 UTS2O95399 124 aa1.25□□□□□ -2.21
VPS50-216ENST00000484954 HEXBP07686 556 aa1.25□□□□□ -2.21
VPS50-216ENST00000484954 HSPA5P11021 654 aaKnown RBP1.25□□□□□ -2.21
VPS50-216ENST00000484954 ATP6V1C1P21283 382 aa1.25□□□□□ -2.21
VPS50-216ENST00000484954 CCR1P32246 355 aa1.25□□□□□ -2.21
VPS50-216ENST00000484954 PPT1P50897 306 aa1.25□□□□□ -2.21
VPS50-216ENST00000484954 DPYSL2Q16555 572 aa1.25□□□□□ -2.21
VPS50-216ENST00000484954 SNRNP35Q16560 246 aaKnown RBP1.25□□□□□ -2.21
VPS50-216ENST00000484954 GALNT17Q6IS24 598 aa1.25□□□□□ -2.21
VPS50-216ENST00000484954 SLC25A24Q6NUK1 477 aa1.25□□□□□ -2.21
VPS50-216ENST00000484954 OR5D13Q8NGL4 314 aa1.25□□□□□ -2.21
VPS50-216ENST00000484954 C15orf40Q8WUR7 153 aa1.25□□□□□ -2.21
VPS50-216ENST00000484954 TBC1D31Q96DN5 1066 aa1.25□□□□□ -2.21
VPS50-216ENST00000484954 ZNF681Q96N22 645 aa1.25□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms