RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 SLC22A8Q8TCC7 542 aa10.6□□□□□ -0.71
NPHP4-204ENST00000460696 ZNF775Q96BV0 537 aaPredicted RBP10.6□□□□□ -0.71
NPHP4-204ENST00000460696 OR6C1Q96RD1 312 aa10.6□□□□□ -0.71
NPHP4-204ENST00000460696 ZNF587Q96SQ5 575 aaPredicted RBP10.6□□□□□ -0.71
NPHP4-204ENST00000460696 CYSLTR2Q9NS75 346 aa10.6□□□□□ -0.71
NPHP4-204ENST00000460696 DKKL1Q9UK85 242 aa10.6□□□□□ -0.71
NPHP4-204ENST00000460696 EXOGQ9Y2C4 368 aaKnown RBP10.6□□□□□ -0.71
NPHP4-204ENST00000460696 AKAP6Q13023 2319 aa10.6□□□□□ -0.71
NPHP4-204ENST00000460696 DOCK9Q9BZ29 2069 aa10.6□□□□□ -0.71
NPHP4-204ENST00000460696 OR2AT4A6NND4 320 aa10.6□□□□□ -0.71
NPHP4-204ENST00000460696 GOSR2O14653 212 aa10.6□□□□□ -0.71
NPHP4-204ENST00000460696 SLC22A5O76082 557 aa10.6□□□□□ -0.71
NPHP4-204ENST00000460696 LDOC1O95751 146 aaPredicted RBP10.6□□□□□ -0.71
NPHP4-204ENST00000460696 DGAT2L6Q6ZPD8 337 aa10.6□□□□□ -0.71
NPHP4-204ENST00000460696 SYS1Q8N2H4 156 aa10.6□□□□□ -0.71
NPHP4-204ENST00000460696 INO80EQ8NBZ0 244 aaPredicted RBP10.6□□□□□ -0.71
NPHP4-204ENST00000460696 FAM174AQ8TBP5 190 aa10.6□□□□□ -0.71
NPHP4-204ENST00000460696 DVL3Q92997 716 aaPredicted RBP10.6□□□□□ -0.71
NPHP4-204ENST00000460696 KTI12Q96EK9 354 aaPredicted RBP10.6□□□□□ -0.71
NPHP4-204ENST00000460696 PGAM5Q96HS1 289 aa10.6□□□□□ -0.71
NPHP4-204ENST00000460696 C7orf50Q9BRJ6 194 aaKnown RBP10.6□□□□□ -0.71
NPHP4-204ENST00000460696 RNF32Q9H0A6 362 aa10.6□□□□□ -0.71
NPHP4-204ENST00000460696 FLVCR2Q9UPI3 526 aa10.6□□□□□ -0.71
NPHP4-204ENST00000460696 DTX4Q9Y2E6 619 aa10.6□□□□□ -0.71
NPHP4-204ENST00000460696 A0A1B0GTH9 108 aa10.59□□□□□ -0.71
NPHP4-204ENST00000460696 KANTRA0A1W2PQU2 76 aa10.59□□□□□ -0.71
NPHP4-204ENST00000460696 NAP1L6A6NFF2 107 aa10.59□□□□□ -0.71
NPHP4-204ENST00000460696 TMEM212A6NML5 194 aa10.59□□□□□ -0.71
NPHP4-204ENST00000460696 NPIPA2E9PIF3 369 aa10.59□□□□□ -0.71
NPHP4-204ENST00000460696 NPIPA3F8WFD2 350 aa10.59□□□□□ -0.71
NPHP4-204ENST00000460696 MEN1O00255 615 aa10.59□□□□□ -0.71
NPHP4-204ENST00000460696 BHLHE40O14503 412 aa10.59□□□□□ -0.71
NPHP4-204ENST00000460696 DVL2O14641 736 aa10.59□□□□□ -0.71
NPHP4-204ENST00000460696 SCRG1O75711 98 aa10.59□□□□□ -0.71
NPHP4-204ENST00000460696 CER1O95813 267 aa10.59□□□□□ -0.71
NPHP4-204ENST00000460696 POLR2HP52434 150 aaKnown RBP10.59□□□□□ -0.71
NPHP4-204ENST00000460696 DMWDQ09019 674 aa10.59□□□□□ -0.71
NPHP4-204ENST00000460696 C1orf140Q5VVS0 124 aa10.59□□□□□ -0.71
NPHP4-204ENST00000460696 KANSL1Q7Z3B3 1105 aa10.59□□□□□ -0.71
NPHP4-204ENST00000460696 ACBD4Q8NC06 268 aa10.59□□□□□ -0.71
NPHP4-204ENST00000460696 ZNF471Q9BX82 626 aaPredicted RBP10.59□□□□□ -0.71
NPHP4-204ENST00000460696 COL25A1Q9BXS0 654 aaPredicted RBP10.59□□□□□ -0.71
NPHP4-204ENST00000460696 METTL8Q9H825 291 aaKnown RBP10.59□□□□□ -0.71
NPHP4-204ENST00000460696 TMEM9BQ9NQ34 198 aa10.59□□□□□ -0.71
NPHP4-204ENST00000460696 KCNG2Q9UJ96 466 aa10.59□□□□□ -0.71
NPHP4-204ENST00000460696 COA3Q9Y2R0 106 aaPredicted RBP10.59□□□□□ -0.71
NPHP4-204ENST00000460696 SIRT4Q9Y6E7 314 aaPredicted RBP10.59□□□□□ -0.71
NPHP4-204ENST00000460696 LAMA2P24043 3122 aaKnown RBP10.59□□□□□ -0.71
NPHP4-204ENST00000460696 MEGF11A6BM72 1044 aa10.59□□□□□ -0.71
NPHP4-204ENST00000460696 MPIG6BO95866 241 aa10.59□□□□□ -0.71
NPHP4-204ENST00000460696 GPANK1O95872 356 aa10.59□□□□□ -0.71
NPHP4-204ENST00000460696 CSTBP04080 98 aaKnown RBP10.59□□□□□ -0.71
NPHP4-204ENST00000460696 AKR1C4P17516 323 aa10.59□□□□□ -0.71
NPHP4-204ENST00000460696 CCNOP22674 350 aa10.59□□□□□ -0.71
NPHP4-204ENST00000460696 CAMK2DQ13557 499 aa10.59□□□□□ -0.71
NPHP4-204ENST00000460696 AWAT2Q6E213 333 aa10.59□□□□□ -0.71
NPHP4-204ENST00000460696 BTN2A1Q7KYR7 527 aa10.59□□□□□ -0.71
NPHP4-204ENST00000460696 BEST3Q8N1M1 668 aa10.59□□□□□ -0.71
NPHP4-204ENST00000460696 RNASE11Q8TAA1 199 aaKnown RBP10.59□□□□□ -0.71
NPHP4-204ENST00000460696 THAP6Q8TBB0 222 aa10.59□□□□□ -0.71
NPHP4-204ENST00000460696 ABHD1Q96SE0 405 aa10.59□□□□□ -0.71
NPHP4-204ENST00000460696 RBM24Q9BX46 236 aaKnown RBP10.59□□□□□ -0.71
NPHP4-204ENST00000460696 MCCC2Q9HCC0 563 aa10.59□□□□□ -0.71
NPHP4-204ENST00000460696 GSKIPQ9P0R6 139 aa10.59□□□□□ -0.71
NPHP4-204ENST00000460696 CGGBP1Q9UFW8 167 aaPredicted RBP10.59□□□□□ -0.71
NPHP4-204ENST00000460696 SLC22A13Q9Y226 551 aa10.59□□□□□ -0.71
NPHP4-204ENST00000460696 NOTCH4Q99466 2003 aa10.59□□□□□ -0.71
NPHP4-204ENST00000460696 ANAPC1Q9H1A4 1944 aa10.59□□□□□ -0.71
NPHP4-204ENST00000460696 A0A0A6YYJ9 748 aa10.59□□□□□ -0.71
NPHP4-204ENST00000460696 F5H5K5 113 aa10.59□□□□□ -0.71
NPHP4-204ENST00000460696 RP2O75695 350 aa10.59□□□□□ -0.71
NPHP4-204ENST00000460696 CTSBP07858 339 aa10.59□□□□□ -0.71
NPHP4-204ENST00000460696 TRAPPC2P0DI81 140 aa10.59□□□□□ -0.71
NPHP4-204ENST00000460696 TRAPPC2BP0DI82 140 aa10.59□□□□□ -0.71
NPHP4-204ENST00000460696 PTBP1P26599 531 aaKnown RBP eCLIP10.59□□□□□ -0.71
NPHP4-204ENST00000460696 RFX2P48378 723 aa10.59□□□□□ -0.71
NPHP4-204ENST00000460696 POU3F4P49335 361 aa10.59□□□□□ -0.71
NPHP4-204ENST00000460696 DUSP3P51452 185 aaPredicted RBP10.59□□□□□ -0.71
NPHP4-204ENST00000460696 CCDC58Q4VC31 144 aa10.59□□□□□ -0.71
NPHP4-204ENST00000460696 GLB1L2Q8IW92 636 aa10.59□□□□□ -0.71
NPHP4-204ENST00000460696 SLC41A2Q96JW4 573 aa10.59□□□□□ -0.71
NPHP4-204ENST00000460696 DCLRE1CQ96SD1 692 aaKnown RBP10.59□□□□□ -0.71
NPHP4-204ENST00000460696 MENTQ9BUN1 341 aa10.59□□□□□ -0.71
NPHP4-204ENST00000460696 MRI1Q9BV20 369 aa10.59□□□□□ -0.71
NPHP4-204ENST00000460696 NXF2Q9GZY0 626 aaKnown RBP10.59□□□□□ -0.71
NPHP4-204ENST00000460696 CCDC86Q9H6F5 360 aaKnown RBP10.59□□□□□ -0.71
NPHP4-204ENST00000460696 MN1Q10571 1320 aaPredicted RBP10.59□□□□□ -0.71
NPHP4-204ENST00000460696 OR14I1A6ND48 311 aa10.58□□□□□ -0.71
NPHP4-204ENST00000460696 IFITM5A6NNB3 132 aa10.58□□□□□ -0.71
NPHP4-204ENST00000460696 A8MVM7 634 aa10.58□□□□□ -0.71
NPHP4-204ENST00000460696 G3V3Y1 287 aa10.58□□□□□ -0.71
NPHP4-204ENST00000460696 PLA2G10O15496 165 aa10.58□□□□□ -0.71
NPHP4-204ENST00000460696 PLPP2O43688 288 aa10.58□□□□□ -0.71
NPHP4-204ENST00000460696 PRICKLE3O43900 615 aaPredicted RBP10.58□□□□□ -0.71
NPHP4-204ENST00000460696 EPPINO95925 133 aa10.58□□□□□ -0.71
NPHP4-204ENST00000460696 HOXC4P09017 264 aaPredicted RBP10.58□□□□□ -0.71
NPHP4-204ENST00000460696 ZGLP1P0C6A0 271 aa10.58□□□□□ -0.71
NPHP4-204ENST00000460696 GZMKP49863 264 aa10.58□□□□□ -0.71
NPHP4-204ENST00000460696 DAP3P51398 398 aaKnown RBP10.58□□□□□ -0.71
NPHP4-204ENST00000460696 SCRN3Q0VDG4 424 aa10.58□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms