RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 FAM213BQ8TBF2 198 aa9.47□□□□□ -0.89
LIMCH1-203ENST00000396595 TCTN2Q96GX1 697 aa9.47□□□□□ -0.89
LIMCH1-203ENST00000396595 FBXO8Q9NRD0 319 aa9.47□□□□□ -0.89
LIMCH1-203ENST00000396595 TM7SF3Q9NS93 570 aa9.47□□□□□ -0.89
LIMCH1-203ENST00000396595 CHRNA9Q9UGM1 479 aa9.47□□□□□ -0.89
LIMCH1-203ENST00000396595 CLEC2DQ9UHP7 191 aa9.47□□□□□ -0.89
LIMCH1-203ENST00000396595 PTRH2Q9Y3E5 179 aaKnown RBP9.47□□□□□ -0.89
LIMCH1-203ENST00000396595 CORINQ9Y5Q5 1042 aa9.47□□□□□ -0.89
LIMCH1-203ENST00000396595 FAM155AB1AL88 458 aaPredicted RBP9.47□□□□□ -0.89
LIMCH1-203ENST00000396595 CLEC3BP05452 202 aa9.47□□□□□ -0.89
LIMCH1-203ENST00000396595 SPI1P17947 270 aa9.47□□□□□ -0.89
LIMCH1-203ENST00000396595 KITLGP21583 273 aa9.47□□□□□ -0.89
LIMCH1-203ENST00000396595 PRPH2P23942 346 aa9.47□□□□□ -0.89
LIMCH1-203ENST00000396595 TNFRSF4P43489 277 aa9.47□□□□□ -0.89
LIMCH1-203ENST00000396595 H3F3AP84243 136 aa9.47□□□□□ -0.89
LIMCH1-203ENST00000396595 TAF9Q16594 264 aa9.47□□□□□ -0.89
LIMCH1-203ENST00000396595 Q6ZTK2 550 aa9.47□□□□□ -0.89
LIMCH1-203ENST00000396595 MDGA2Q7Z553 956 aa9.47□□□□□ -0.89
LIMCH1-203ENST00000396595 ARSGQ96EG1 525 aa9.47□□□□□ -0.89
LIMCH1-203ENST00000396595 GPR78Q96P69 363 aa9.47□□□□□ -0.89
LIMCH1-203ENST00000396595 GSX2Q9BZM3 304 aa9.47□□□□□ -0.89
LIMCH1-203ENST00000396595 ZNF629Q9UEG4 869 aaPredicted RBP9.47□□□□□ -0.89
LIMCH1-203ENST00000396595 LOC100289279A0A1B0GTE1 492 aa9.47□□□□□ -0.89
LIMCH1-203ENST00000396595 POM121BA6NF01 834 aa9.47□□□□□ -0.89
LIMCH1-203ENST00000396595 MTCP1P56278 107 aa9.47□□□□□ -0.89
LIMCH1-203ENST00000396595 YPEL5P62699 121 aa9.47□□□□□ -0.89
LIMCH1-203ENST00000396595 MRPS34P82930 218 aaKnown RBP9.47□□□□□ -0.89
LIMCH1-203ENST00000396595 EBPQ15125 230 aaKnown RBP9.47□□□□□ -0.89
LIMCH1-203ENST00000396595 PLGLAQ15195 96 aa9.47□□□□□ -0.89
LIMCH1-203ENST00000396595 ZNF74Q16587 644 aa9.47□□□□□ -0.89
LIMCH1-203ENST00000396595 NLRC3Q7RTR2 1065 aa9.47□□□□□ -0.89
LIMCH1-203ENST00000396595 ZNF566Q969W8 418 aa9.47□□□□□ -0.89
LIMCH1-203ENST00000396595 CPNE4Q96A23 557 aaPredicted RBP9.47□□□□□ -0.89
LIMCH1-203ENST00000396595 SELENOIQ9C0D9 397 aa9.47□□□□□ -0.89
LIMCH1-203ENST00000396595 ESRP2Q9H6T0 727 aaKnown RBP9.47□□□□□ -0.89
LIMCH1-203ENST00000396595 ATP13A2Q9NQ11 1180 aa9.47□□□□□ -0.89
LIMCH1-203ENST00000396595 TMEM200CA6NKL6 621 aa9.46□□□□□ -0.89
LIMCH1-203ENST00000396595 FCGR2AP12318 317 aa9.46□□□□□ -0.89
LIMCH1-203ENST00000396595 RAB5AP20339 215 aa9.46□□□□□ -0.89
LIMCH1-203ENST00000396595 MMP11P24347 488 aa9.46□□□□□ -0.89
LIMCH1-203ENST00000396595 BLVRBP30043 206 aaPredicted RBP9.46□□□□□ -0.89
LIMCH1-203ENST00000396595 ECI1P42126 302 aa9.46□□□□□ -0.89
LIMCH1-203ENST00000396595 CCR6P51684 374 aa9.46□□□□□ -0.89
LIMCH1-203ENST00000396595 SLC48A1Q6P1K1 146 aa9.46□□□□□ -0.89
LIMCH1-203ENST00000396595 SHISA6Q6ZSJ9 500 aa9.46□□□□□ -0.89
LIMCH1-203ENST00000396595 ADGRE4PQ86SQ3 457 aa9.46□□□□□ -0.89
LIMCH1-203ENST00000396595 WDR5BQ86VZ2 330 aa9.46□□□□□ -0.89
LIMCH1-203ENST00000396595 PPP1R3BQ86XI6 285 aa9.46□□□□□ -0.89
LIMCH1-203ENST00000396595 TMEM255BQ8WV15 326 aa9.46□□□□□ -0.89
LIMCH1-203ENST00000396595 FAM3DQ96BQ1 224 aa9.46□□□□□ -0.89
LIMCH1-203ENST00000396595 FAM173AQ9BQD7 235 aa9.46□□□□□ -0.89
LIMCH1-203ENST00000396595 GABARAPL1Q9H0R8 117 aa9.46□□□□□ -0.89
LIMCH1-203ENST00000396595 TAAR2Q9P1P5 351 aa9.46□□□□□ -0.89
LIMCH1-203ENST00000396595 NDRG4Q9ULP0 352 aaKnown RBP9.46□□□□□ -0.89
LIMCH1-203ENST00000396595 HSFX4A0A1B0GTS1 333 aaPredicted RBP9.46□□□□□ -0.89
LIMCH1-203ENST00000396595 HSFX3A0A1B0GWH4 333 aaPredicted RBP9.46□□□□□ -0.89
LIMCH1-203ENST00000396595 H7C1C5 153 aa9.46□□□□□ -0.89
LIMCH1-203ENST00000396595 MEOX2P50222 304 aa9.46□□□□□ -0.89
LIMCH1-203ENST00000396595 OR2B8PP59922 312 aa9.46□□□□□ -0.89
LIMCH1-203ENST00000396595 PFN3P60673 137 aa9.46□□□□□ -0.89
LIMCH1-203ENST00000396595 HBG1P69891 147 aa9.46□□□□□ -0.89
LIMCH1-203ENST00000396595 HBG2P69892 147 aa9.46□□□□□ -0.89
LIMCH1-203ENST00000396595 TMEM31Q5JXX7 168 aa9.46□□□□□ -0.89
LIMCH1-203ENST00000396595 ZNF684Q5T5D7 378 aa9.46□□□□□ -0.89
LIMCH1-203ENST00000396595 ADAMTSL4Q6UY14 1074 aa9.46□□□□□ -0.89
LIMCH1-203ENST00000396595 LANCL3Q6ZV70 420 aa9.46□□□□□ -0.89
LIMCH1-203ENST00000396595 ESPNLQ6ZVH7 1005 aa9.46□□□□□ -0.89
LIMCH1-203ENST00000396595 LMNTD1Q8N9Z9 388 aa9.46□□□□□ -0.89
LIMCH1-203ENST00000396595 RAB22AQ9UL26 194 aa9.46□□□□□ -0.89
LIMCH1-203ENST00000396595 SCN11AQ9UI33 1791 aa9.46□□□□□ -0.9
LIMCH1-203ENST00000396595 AQP7O14520 342 aa9.46□□□□□ -0.9
LIMCH1-203ENST00000396595 MTHFD2P13995 350 aa9.46□□□□□ -0.9
LIMCH1-203ENST00000396595 ZNF266Q14584 549 aa9.46□□□□□ -0.9
LIMCH1-203ENST00000396595 MFSD12Q6NUT3 480 aa9.46□□□□□ -0.9
LIMCH1-203ENST00000396595 BRICD5Q6PL45 260 aa9.46□□□□□ -0.9
LIMCH1-203ENST00000396595 WDR83Q9BRX9 315 aaKnown RBP9.46□□□□□ -0.9
LIMCH1-203ENST00000396595 C1QTNF3Q9BXJ4 246 aa9.46□□□□□ -0.9
LIMCH1-203ENST00000396595 YTHDF2Q9Y5A9 579 aaKnown RBP9.46□□□□□ -0.9
LIMCH1-203ENST00000396595 WIF1Q9Y5W5 379 aa9.46□□□□□ -0.9
LIMCH1-203ENST00000396595 V9GYS6 101 aa9.46□□□□□ -0.9
LIMCH1-203ENST00000396595 MCRIP1C9JLW8 97 aa9.46□□□□□ -0.9
LIMCH1-203ENST00000396595 MRPL19P49406 292 aaKnown RBP9.46□□□□□ -0.9
LIMCH1-203ENST00000396595 GP2P55259 537 aaKnown RBP9.46□□□□□ -0.9
LIMCH1-203ENST00000396595 BAMBIQ13145 260 aa9.46□□□□□ -0.9
LIMCH1-203ENST00000396595 CAMK2BQ13554 666 aa9.46□□□□□ -0.9
LIMCH1-203ENST00000396595 SFRP5Q5T4F7 317 aa9.46□□□□□ -0.9
LIMCH1-203ENST00000396595 RFLNAQ6ZTI6 216 aa9.46□□□□□ -0.9
LIMCH1-203ENST00000396595 PRICKLE2Q7Z3G6 844 aa9.46□□□□□ -0.9
LIMCH1-203ENST00000396595 MRPL43Q8N983 215 aaKnown RBP9.46□□□□□ -0.9
LIMCH1-203ENST00000396595 ZNF610Q8N9Z0 462 aa9.46□□□□□ -0.9
LIMCH1-203ENST00000396595 KLHDC9Q8NEP7 349 aa9.46□□□□□ -0.9
LIMCH1-203ENST00000396595 OR8U1Q8NH10 309 aa9.46□□□□□ -0.9
LIMCH1-203ENST00000396595 FGF13Q92913 245 aa9.46□□□□□ -0.9
LIMCH1-203ENST00000396595 EXTL1Q92935 676 aa9.46□□□□□ -0.9
LIMCH1-203ENST00000396595 CDCA4Q9BXL8 241 aa9.46□□□□□ -0.9
LIMCH1-203ENST00000396595 DUSP21Q9H596 190 aa9.46□□□□□ -0.9
LIMCH1-203ENST00000396595 GPR55Q9Y2T6 319 aaPredicted RBP9.46□□□□□ -0.9
LIMCH1-203ENST00000396595 MYO9BQ13459 2157 aa9.46□□□□□ -0.9
LIMCH1-203ENST00000396595 CDC14CA4D256 554 aa9.45□□□□□ -0.9
LIMCH1-203ENST00000396595 M0R143 59 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms