RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 OR51T1Q8NGJ9 327 aa12.42□□□□□ -0.42
LDLR-201ENST00000252444 QRSL1Q9H0R6 528 aaKnown RBP12.42□□□□□ -0.42
LDLR-201ENST00000252444 IGHV3-20A0A0C4DH32 117 aa12.42□□□□□ -0.42
LDLR-201ENST00000252444 AGTR1P30556 359 aa12.42□□□□□ -0.42
LDLR-201ENST00000252444 SF3A2Q15428 464 aaKnown RBP12.42□□□□□ -0.42
LDLR-201ENST00000252444 C8orf82Q6P1X6 216 aaPredicted RBP12.42□□□□□ -0.42
LDLR-201ENST00000252444 OR52A1Q9UKL2 312 aa12.42□□□□□ -0.42
LDLR-201ENST00000252444 POLDIP2Q9Y2S7 368 aa12.42□□□□□ -0.42
LDLR-201ENST00000252444 AMDHD2Q9Y303 409 aa12.42□□□□□ -0.42
LDLR-201ENST00000252444 TRBV5-3A0A0A0MS03 114 aa12.41□□□□□ -0.42
LDLR-201ENST00000252444 SBK2P0C263 348 aa12.41□□□□□ -0.42
LDLR-201ENST00000252444 SLC46A3Q7Z3Q1 461 aa12.41□□□□□ -0.42
LDLR-201ENST00000252444 Q8N402 240 aa12.41□□□□□ -0.42
LDLR-201ENST00000252444 FAM109AQ8N4B1 249 aa12.41□□□□□ -0.42
LDLR-201ENST00000252444 SLAMF9Q96A28 289 aa12.41□□□□□ -0.42
LDLR-201ENST00000252444 C10orf90Q96M02 699 aa12.41□□□□□ -0.42
LDLR-201ENST00000252444 UBAP1Q9NZ09 502 aa12.41□□□□□ -0.42
LDLR-201ENST00000252444 PRICKLE3O43900 615 aaPredicted RBP12.41□□□□□ -0.42
LDLR-201ENST00000252444 CELA2BP08218 269 aaPredicted RBP12.41□□□□□ -0.42
LDLR-201ENST00000252444 AZGP1P25311 298 aaKnown RBP12.41□□□□□ -0.42
LDLR-201ENST00000252444 SOX3P41225 446 aa12.41□□□□□ -0.42
LDLR-201ENST00000252444 SCAND1P57086 179 aa12.41□□□□□ -0.42
LDLR-201ENST00000252444 RPP30P78346 268 aaKnown RBP12.41□□□□□ -0.42
LDLR-201ENST00000252444 UBE3DQ7Z6J8 389 aa12.41□□□□□ -0.42
LDLR-201ENST00000252444 TXNDC15Q96J42 360 aa12.41□□□□□ -0.42
LDLR-201ENST00000252444 FUZQ9BT04 418 aa12.41□□□□□ -0.42
LDLR-201ENST00000252444 SLC26A1Q9H2B4 701 aa12.41□□□□□ -0.42
LDLR-201ENST00000252444 PLK3Q9H4B4 646 aa12.41□□□□□ -0.42
LDLR-201ENST00000252444 NUBP2Q9Y5Y2 271 aa12.41□□□□□ -0.42
LDLR-201ENST00000252444 TSC2P49815 1807 aa12.41□□□□□ -0.42
LDLR-201ENST00000252444 A0A0A6YYH2 397 aa12.41□□□□□ -0.42
LDLR-201ENST00000252444 hCG_1807616A0A1W2PRN6 198 aa12.41□□□□□ -0.42
LDLR-201ENST00000252444 A6NJ64 397 aa12.41□□□□□ -0.42
LDLR-201ENST00000252444 IFNGR1P15260 489 aa12.41□□□□□ -0.42
LDLR-201ENST00000252444 RPL19P84098 196 aaKnown RBP12.41□□□□□ -0.42
LDLR-201ENST00000252444 RPL18Q07020 188 aaKnown RBP12.41□□□□□ -0.42
LDLR-201ENST00000252444 LHFPL2Q6ZUX7 228 aa12.41□□□□□ -0.42
LDLR-201ENST00000252444 ZNF845Q96IR2 970 aaPredicted RBP12.41□□□□□ -0.42
LDLR-201ENST00000252444 CALHM2Q9HA72 323 aa12.41□□□□□ -0.42
LDLR-201ENST00000252444 NTMQ9P121 344 aa12.41□□□□□ -0.42
LDLR-201ENST00000252444 CACFD1Q9UGQ2 172 aa12.41□□□□□ -0.42
LDLR-201ENST00000252444 DOK2O60496 412 aa12.41□□□□□ -0.42
LDLR-201ENST00000252444 AKAIN1P0CW23 69 aa12.41□□□□□ -0.42
LDLR-201ENST00000252444 SPI1P17947 270 aa12.41□□□□□ -0.42
LDLR-201ENST00000252444 EMDP50402 254 aa12.41□□□□□ -0.42
LDLR-201ENST00000252444 PRKXP51817 358 aa12.41□□□□□ -0.42
LDLR-201ENST00000252444 MLF1P58340 268 aa12.41□□□□□ -0.42
LDLR-201ENST00000252444 FOXF1Q12946 379 aa12.41□□□□□ -0.42
LDLR-201ENST00000252444 RNLSQ5VYX0 342 aa12.41□□□□□ -0.42
LDLR-201ENST00000252444 NKAIN4Q8IVV8 208 aa12.41□□□□□ -0.42
LDLR-201ENST00000252444 CMTM1Q8IZ96 169 aa12.41□□□□□ -0.42
LDLR-201ENST00000252444 DEDD2Q8WXF8 326 aa12.41□□□□□ -0.42
LDLR-201ENST00000252444 C11orf40Q8WZ69 217 aa12.41□□□□□ -0.42
LDLR-201ENST00000252444 ERVK13-1Q9NX77 482 aa12.41□□□□□ -0.42
LDLR-201ENST00000252444 IL20Q9NYY1 176 aa12.41□□□□□ -0.42
LDLR-201ENST00000252444 C19orf67A6NJJ6 358 aa12.41□□□□□ -0.42
LDLR-201ENST00000252444 GABRPO00591 440 aa12.41□□□□□ -0.42
LDLR-201ENST00000252444 SORBS2O94875 1100 aaKnown RBP12.41□□□□□ -0.42
LDLR-201ENST00000252444 HTR3BO95264 441 aa12.41□□□□□ -0.42
LDLR-201ENST00000252444 B3GALT4O96024 378 aa12.41□□□□□ -0.42
LDLR-201ENST00000252444 LINC00271P0C7V0 271 aa12.41□□□□□ -0.42
LDLR-201ENST00000252444 DDOSTP39656 456 aa12.41□□□□□ -0.42
LDLR-201ENST00000252444 MEOX1P50221 254 aa12.41□□□□□ -0.42
LDLR-201ENST00000252444 ACKR1Q16570 336 aa12.41□□□□□ -0.42
LDLR-201ENST00000252444 NMNAT3Q96T66 252 aa12.41□□□□□ -0.42
LDLR-201ENST00000252444 TEAD3Q99594 435 aa12.41□□□□□ -0.42
LDLR-201ENST00000252444 NIPSNAP1Q9BPW8 284 aa12.41□□□□□ -0.42
LDLR-201ENST00000252444 OSGIN1Q9UJX0 560 aa12.41□□□□□ -0.42
LDLR-201ENST00000252444 CES1P1Q9UKY3 287 aa12.41□□□□□ -0.42
LDLR-201ENST00000252444 E9PI62 339 aa12.4□□□□□ -0.42
LDLR-201ENST00000252444 KLK10O43240 276 aa12.4□□□□□ -0.42
LDLR-201ENST00000252444 ABHD16AO95870 558 aa12.4□□□□□ -0.42
LDLR-201ENST00000252444 SMIM10L1P0DMW3 83 aa12.4□□□□□ -0.42
LDLR-201ENST00000252444 SRPXP78539 464 aa12.4□□□□□ -0.42
LDLR-201ENST00000252444 PPA1Q15181 289 aa12.4□□□□□ -0.42
LDLR-201ENST00000252444 NKAPLQ5M9Q1 402 aa12.4□□□□□ -0.42
LDLR-201ENST00000252444 IGFN1Q86VF2 1251 aa12.4□□□□□ -0.42
LDLR-201ENST00000252444 SMIM10Q96HG1 83 aa12.4□□□□□ -0.42
LDLR-201ENST00000252444 RAB22AQ9UL26 194 aa12.4□□□□□ -0.42
LDLR-201ENST00000252444 RCE1Q9Y256 329 aa12.4□□□□□ -0.42
LDLR-201ENST00000252444 ASPDHA6ND91 283 aa12.4□□□□□ -0.42
LDLR-201ENST00000252444 PMS2P2O95744 297 aa12.4□□□□□ -0.42
LDLR-201ENST00000252444 MAS1P04201 325 aa12.4□□□□□ -0.42
LDLR-201ENST00000252444 WNT1P04628 370 aa12.4□□□□□ -0.42
LDLR-201ENST00000252444 TAS2R19P59542 299 aa12.4□□□□□ -0.42
LDLR-201ENST00000252444 GTPBP8Q8N3Z3 284 aaPredicted RBP12.4□□□□□ -0.42
LDLR-201ENST00000252444 PFN4Q8NHR9 129 aa12.4□□□□□ -0.42
LDLR-201ENST00000252444 FAM71F1Q96KD3 344 aaPredicted RBP12.4□□□□□ -0.42
LDLR-201ENST00000252444 SLC5A7Q9GZV3 580 aa12.4□□□□□ -0.42
LDLR-201ENST00000252444 CCDC86Q9H6F5 360 aaKnown RBP12.4□□□□□ -0.42
LDLR-201ENST00000252444 FAIMQ9NVQ4 179 aa12.4□□□□□ -0.42
LDLR-201ENST00000252444 A4GNTQ9UNA3 340 aa12.4□□□□□ -0.42
LDLR-201ENST00000252444 PCDHGA3Q9Y5H0 932 aa12.4□□□□□ -0.42
LDLR-201ENST00000252444 FAM57BQ71RH2 274 aa12.4□□□□□ -0.42
LDLR-201ENST00000252444 SNX29P2Q8IUI4 249 aa12.4□□□□□ -0.42
LDLR-201ENST00000252444 OR13F1Q8NGS4 319 aa12.4□□□□□ -0.42
LDLR-201ENST00000252444 SCPEP1Q9HB40 452 aa12.4□□□□□ -0.42
LDLR-201ENST00000252444 DNAJB11Q9UBS4 358 aa12.4□□□□□ -0.42
LDLR-201ENST00000252444 WDR81Q562E7 1941 aa12.4□□□□□ -0.42
LDLR-201ENST00000252444 KANTRA0A1W2PQU2 76 aa12.4□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms