RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 ZNF43P17038 809 aa9.43□□□□□ -0.9
VPS53-207ENST00000570510 IL12AP29459 219 aa9.43□□□□□ -0.9
VPS53-207ENST00000570510 CHI3L1P36222 383 aaPredicted RBP9.43□□□□□ -0.9
VPS53-207ENST00000570510 PTDSS1P48651 473 aaKnown RBP9.43□□□□□ -0.9
VPS53-207ENST00000570510 AQP5P55064 265 aa9.43□□□□□ -0.9
VPS53-207ENST00000570510 CLDN17P56750 224 aa9.43□□□□□ -0.9
VPS53-207ENST00000570510 C1DQ13901 141 aaKnown RBP9.43□□□□□ -0.9
VPS53-207ENST00000570510 TAF9Q16594 264 aa9.43□□□□□ -0.9
VPS53-207ENST00000570510 RGS7BPQ6MZT1 257 aaPredicted RBP9.43□□□□□ -0.9
VPS53-207ENST00000570510 BLOC1S3Q6QNY0 202 aa9.43□□□□□ -0.9
VPS53-207ENST00000570510 LRRC74BQ6ZQY2 392 aa9.43□□□□□ -0.9
VPS53-207ENST00000570510 USP51Q70EK9 711 aa9.43□□□□□ -0.9
VPS53-207ENST00000570510 OLIG3Q7RTU3 272 aa9.43□□□□□ -0.9
VPS53-207ENST00000570510 ANKRD46Q86W74 232 aa9.43□□□□□ -0.9
VPS53-207ENST00000570510 CLECL1Q8IZS7 167 aa9.43□□□□□ -0.9
VPS53-207ENST00000570510 XAGE5Q8WWM1 108 aa9.43□□□□□ -0.9
VPS53-207ENST00000570510 CCL17Q92583 94 aa9.43□□□□□ -0.9
VPS53-207ENST00000570510 MS4A3Q96HJ5 214 aa9.43□□□□□ -0.9
VPS53-207ENST00000570510 TEX37Q96LM6 180 aa9.43□□□□□ -0.9
VPS53-207ENST00000570510 ZNF48Q96MX3 618 aaPredicted RBP9.43□□□□□ -0.9
VPS53-207ENST00000570510 OR52B2Q96RD2 323 aa9.43□□□□□ -0.9
VPS53-207ENST00000570510 CITED1Q99966 193 aa9.43□□□□□ -0.9
VPS53-207ENST00000570510 NELFAQ9H3P2 528 aa9.43□□□□□ -0.9
VPS53-207ENST00000570510 MTHFD2LQ9H903 347 aaPredicted RBP9.43□□□□□ -0.9
VPS53-207ENST00000570510 SAP30LQ9HAJ7 183 aa9.43□□□□□ -0.9
VPS53-207ENST00000570510 GPR35Q9HC97 309 aa9.43□□□□□ -0.9
VPS53-207ENST00000570510 SLCO1B3Q9NPD5 702 aa9.43□□□□□ -0.9
VPS53-207ENST00000570510 SLCO1C1Q9NYB5 712 aa9.43□□□□□ -0.9
VPS53-207ENST00000570510 PURGQ9UJV8 347 aaKnown RBP9.43□□□□□ -0.9
VPS53-207ENST00000570510 RASD1Q9Y272 281 aa9.43□□□□□ -0.9
VPS53-207ENST00000570510 NUP214P35658 2090 aaPredicted RBP9.43□□□□□ -0.9
VPS53-207ENST00000570510 PPIAL4EA0A075B759 164 aa9.42□□□□□ -0.9
VPS53-207ENST00000570510 A0A096LPI6 279 aa9.42□□□□□ -0.9
VPS53-207ENST00000570510 PPIAL4CA0A0B4J2A2 164 aa9.42□□□□□ -0.9
VPS53-207ENST00000570510 FAM181BA6NEQ2 426 aa9.42□□□□□ -0.9
VPS53-207ENST00000570510 SLC22A31A6NKX4 558 aa9.42□□□□□ -0.9
VPS53-207ENST00000570510 PPIAL4DF5H284 164 aa9.42□□□□□ -0.9
VPS53-207ENST00000570510 FAAHO00519 579 aa9.42□□□□□ -0.9
VPS53-207ENST00000570510 NPPAP01160 153 aa9.42□□□□□ -0.9
VPS53-207ENST00000570510 PPIAL4FP0DN26 164 aa9.42□□□□□ -0.9
VPS53-207ENST00000570510 DRD4P21917 467 aa9.42□□□□□ -0.9
VPS53-207ENST00000570510 KLF3P57682 345 aaPredicted RBP9.42□□□□□ -0.9
VPS53-207ENST00000570510 SLC3A1Q07837 685 aa9.42□□□□□ -0.9
VPS53-207ENST00000570510 ZNF154Q13106 437 aa9.42□□□□□ -0.9
VPS53-207ENST00000570510 HLXQ14774 488 aaPredicted RBP9.42□□□□□ -0.9
VPS53-207ENST00000570510 PDCD1Q15116 288 aa9.42□□□□□ -0.9
VPS53-207ENST00000570510 MAPK14Q16539 360 aa9.42□□□□□ -0.9
VPS53-207ENST00000570510 MOGQ16653 247 aa9.42□□□□□ -0.9
VPS53-207ENST00000570510 MSMPQ1L6U9 139 aa9.42□□□□□ -0.9
VPS53-207ENST00000570510 GPAT3Q53EU6 434 aa9.42□□□□□ -0.9
VPS53-207ENST00000570510 COQ5Q5HYK3 327 aa9.42□□□□□ -0.9
VPS53-207ENST00000570510 LRIF1Q5T3J3 769 aa9.42□□□□□ -0.9
VPS53-207ENST00000570510 ZNF621Q6ZSS3 439 aa9.42□□□□□ -0.9
VPS53-207ENST00000570510 HMGN2P46Q86SG4 172 aa9.42□□□□□ -0.9
VPS53-207ENST00000570510 ZNF440Q8IYI8 595 aa9.42□□□□□ -0.9
VPS53-207ENST00000570510 PIK3C3Q8NEB9 887 aa9.42□□□□□ -0.9
VPS53-207ENST00000570510 FAM71CQ8NEG0 241 aa9.42□□□□□ -0.9
VPS53-207ENST00000570510 OR52E2Q8NGJ4 325 aa9.42□□□□□ -0.9
VPS53-207ENST00000570510 GTF2H4Q92759 462 aa9.42□□□□□ -0.9
VPS53-207ENST00000570510 ELMOD3Q96FG2 381 aa9.42□□□□□ -0.9
VPS53-207ENST00000570510 OR51I1Q9H343 314 aa9.42□□□□□ -0.9
VPS53-207ENST00000570510 ARMC7Q9H6L4 198 aa9.42□□□□□ -0.9
VPS53-207ENST00000570510 TCF7L1Q9HCS4 588 aa9.42□□□□□ -0.9
VPS53-207ENST00000570510 SEC14L4Q9UDX3 406 aa9.42□□□□□ -0.9
VPS53-207ENST00000570510 SLC7A8Q9UHI5 535 aa9.42□□□□□ -0.9
VPS53-207ENST00000570510 CMYA5Q8N3K9 4069 aa9.41□□□□□ -0.9
VPS53-207ENST00000570510 IGHV3OR16-10A0A075B7F0 116 aa9.41□□□□□ -0.9
VPS53-207ENST00000570510 CLPSL1A2RUU4 121 aa9.41□□□□□ -0.9
VPS53-207ENST00000570510 ZNF503-AS2A6NEH8 195 aa9.41□□□□□ -0.9
VPS53-207ENST00000570510 CFAP73A6NFT4 308 aa9.41□□□□□ -0.9
VPS53-207ENST00000570510 ZNF99A8MXY4 864 aaPredicted RBP9.41□□□□□ -0.9
VPS53-207ENST00000570510 RPL36A-HNRNPH2H7BZ11 118 aa9.41□□□□□ -0.9
VPS53-207ENST00000570510 HMGN4O00479 90 aa9.41□□□□□ -0.9
VPS53-207ENST00000570510 AP3D1O14617 1153 aa9.41□□□□□ -0.9
VPS53-207ENST00000570510 HOXA3O43365 443 aaPredicted RBP9.41□□□□□ -0.9
VPS53-207ENST00000570510 AKAP8O43823 692 aaKnown RBP9.41□□□□□ -0.9
VPS53-207ENST00000570510 BCAS1O75363 584 aaPredicted RBP9.41□□□□□ -0.9
VPS53-207ENST00000570510 ANP32DO95626 131 aa9.41□□□□□ -0.9
VPS53-207ENST00000570510 CPSF4O95639 269 aaKnown RBP9.41□□□□□ -0.9
VPS53-207ENST00000570510 ZNF35P13682 527 aa9.41□□□□□ -0.9
VPS53-207ENST00000570510 COPZ1P61923 177 aa9.41□□□□□ -0.9
VPS53-207ENST00000570510 CAMK2DQ13557 499 aa9.41□□□□□ -0.9
VPS53-207ENST00000570510 FAM189A2Q15884 450 aa9.41□□□□□ -0.9
VPS53-207ENST00000570510 TSTQ16762 297 aaKnown RBP9.41□□□□□ -0.9
VPS53-207ENST00000570510 REC114Q7Z4M0 266 aa9.41□□□□□ -0.9
VPS53-207ENST00000570510 SNX32Q86XE0 403 aa9.41□□□□□ -0.9
VPS53-207ENST00000570510 EPHX4Q8IUS5 362 aa9.41□□□□□ -0.9
VPS53-207ENST00000570510 DPP10Q8N608 796 aa9.41□□□□□ -0.9
VPS53-207ENST00000570510 ICA1LQ8NDH6 482 aa9.41□□□□□ -0.9
VPS53-207ENST00000570510 CPEB3Q8NE35 698 aaKnown RBP9.41□□□□□ -0.9
VPS53-207ENST00000570510 DEFB108BQ8NET1 73 aa9.41□□□□□ -0.9
VPS53-207ENST00000570510 BHLHE22Q8NFJ8 381 aaPredicted RBP9.41□□□□□ -0.9
VPS53-207ENST00000570510 SYNPRQ8TBG9 265 aa9.41□□□□□ -0.9
VPS53-207ENST00000570510 C11orf40Q8WZ69 217 aa9.41□□□□□ -0.9
VPS53-207ENST00000570510 CNOT9Q92600 299 aaKnown RBP9.41□□□□□ -0.9
VPS53-207ENST00000570510 ROPN1LQ96C74 230 aa9.41□□□□□ -0.9
VPS53-207ENST00000570510 SLC25A36Q96CQ1 311 aa9.41□□□□□ -0.9
VPS53-207ENST00000570510 SPDL1Q96EA4 605 aa9.41□□□□□ -0.9
VPS53-207ENST00000570510 TPT1P8Q9HAU6 139 aa9.41□□□□□ -0.9
VPS53-207ENST00000570510 B3GAT2Q9NPZ5 323 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms