RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 SLC35D2Q76EJ3 337 aa14.85□□□□□ -0.03
VPS9D1-203ENST00000563798 MRPL24Q96A35 216 aaKnown RBP14.85□□□□□ -0.03
VPS9D1-203ENST00000563798 MS4A3Q96HJ5 214 aa14.85□□□□□ -0.03
VPS9D1-203ENST00000563798 NANSQ9NR45 359 aa14.85□□□□□ -0.03
VPS9D1-203ENST00000563798 GLTPQ9NZD2 209 aa14.85□□□□□ -0.03
VPS9D1-203ENST00000563798 ZNF229Q9UJW7 825 aa14.85□□□□□ -0.03
VPS9D1-203ENST00000563798 KCNS2Q9ULS6 477 aa14.85□□□□□ -0.03
VPS9D1-203ENST00000563798 SPEF1Q9Y4P9 236 aa14.85□□□□□ -0.03
VPS9D1-203ENST00000563798 LOC100289279A0A1B0GTE1 492 aa14.84□□□□□ -0.03
VPS9D1-203ENST00000563798 CPSF4LA6NMK7 179 aaKnown RBP14.84□□□□□ -0.03
VPS9D1-203ENST00000563798 FBP2O00757 339 aa14.84□□□□□ -0.03
VPS9D1-203ENST00000563798 ENTPD5O75356 428 aa14.84□□□□□ -0.03
VPS9D1-203ENST00000563798 OR6A2O95222 327 aa14.84□□□□□ -0.03
VPS9D1-203ENST00000563798 CH25HO95992 272 aa14.84□□□□□ -0.03
VPS9D1-203ENST00000563798 IGF2P01344 180 aa14.84□□□□□ -0.03
VPS9D1-203ENST00000563798 CD79AP11912 226 aa14.84□□□□□ -0.03
VPS9D1-203ENST00000563798 B4GALT1P15291 398 aa14.84□□□□□ -0.03
VPS9D1-203ENST00000563798 BIDP55957 195 aa14.84□□□□□ -0.03
VPS9D1-203ENST00000563798 MSMPQ1L6U9 139 aa14.84□□□□□ -0.03
VPS9D1-203ENST00000563798 TRMT5Q32P41 509 aaKnown RBP14.84□□□□□ -0.03
VPS9D1-203ENST00000563798 COQ5Q5HYK3 327 aa14.84□□□□□ -0.03
VPS9D1-203ENST00000563798 KRT80Q6KB66 452 aa14.84□□□□□ -0.03
VPS9D1-203ENST00000563798 NANOGP8Q6NSW7 305 aa14.84□□□□□ -0.03
VPS9D1-203ENST00000563798 LRFN4Q6PJG9 635 aa14.84□□□□□ -0.03
VPS9D1-203ENST00000563798 CALHM3Q86XJ0 350 aa14.84□□□□□ -0.03
VPS9D1-203ENST00000563798 PHC2Q8IXK0 858 aa14.84□□□□□ -0.03
VPS9D1-203ENST00000563798 CDK20Q8IZL9 346 aa14.84□□□□□ -0.03
VPS9D1-203ENST00000563798 OR10A6Q8NH74 314 aa14.84□□□□□ -0.03
VPS9D1-203ENST00000563798 HPS1Q92902 700 aa14.84□□□□□ -0.03
VPS9D1-203ENST00000563798 THOC1Q96FV9 657 aaKnown RBP14.84□□□□□ -0.03
VPS9D1-203ENST00000563798 SLC25A44Q96H78 314 aaPredicted RBP14.84□□□□□ -0.03
VPS9D1-203ENST00000563798 PRSS27Q9BQR3 290 aa14.84□□□□□ -0.03
VPS9D1-203ENST00000563798 NANOGQ9H9S0 305 aa14.84□□□□□ -0.03
VPS9D1-203ENST00000563798 NPHS2Q9NP85 383 aa14.84□□□□□ -0.03
VPS9D1-203ENST00000563798 MRGBPQ9NV56 204 aa14.84□□□□□ -0.03
VPS9D1-203ENST00000563798 SLC7A7Q9UM01 511 aa14.84□□□□□ -0.03
VPS9D1-203ENST00000563798 MALRD1Q5VYJ5 2156 aa14.83□□□□□ -0.04
VPS9D1-203ENST00000563798 PHF1O43189 567 aaPredicted RBP14.83□□□□□ -0.04
VPS9D1-203ENST00000563798 SYNGR3O43761 229 aa14.83□□□□□ -0.04
VPS9D1-203ENST00000563798 LILRA1O75019 489 aa14.83□□□□□ -0.04
VPS9D1-203ENST00000563798 NPPAP01160 153 aa14.83□□□□□ -0.04
VPS9D1-203ENST00000563798 SERPINA5P05154 406 aa14.83□□□□□ -0.04
VPS9D1-203ENST00000563798 H2AFXP16104 143 aaPredicted RBP14.83□□□□□ -0.04
VPS9D1-203ENST00000563798 GIPRP48546 466 aa14.83□□□□□ -0.04
VPS9D1-203ENST00000563798 PIGFQ07326 219 aa14.83□□□□□ -0.04
VPS9D1-203ENST00000563798 RIN1Q13671 783 aa14.83□□□□□ -0.04
VPS9D1-203ENST00000563798 CYLC2Q14093 348 aaPredicted RBP14.83□□□□□ -0.04
VPS9D1-203ENST00000563798 CARTPTQ16568 116 aa14.83□□□□□ -0.04
VPS9D1-203ENST00000563798 NRN1LQ496H8 165 aa14.83□□□□□ -0.04
VPS9D1-203ENST00000563798 IQCCQ4KMZ1 466 aa14.83□□□□□ -0.04
VPS9D1-203ENST00000563798 DPPA2Q7Z7J5 298 aa14.83□□□□□ -0.04
VPS9D1-203ENST00000563798 SKA3Q8IX90 412 aa14.83□□□□□ -0.04
VPS9D1-203ENST00000563798 ZCCHC24Q8N2G6 241 aaKnown RBP14.83□□□□□ -0.04
VPS9D1-203ENST00000563798 ARIH2OSQ8N7S6 290 aa14.83□□□□□ -0.04
VPS9D1-203ENST00000563798 VANGL1Q8TAA9 524 aaPredicted RBP14.83□□□□□ -0.04
VPS9D1-203ENST00000563798 UBASH3BQ8TF42 649 aa14.83□□□□□ -0.04
VPS9D1-203ENST00000563798 ZNF566Q969W8 418 aa14.83□□□□□ -0.04
VPS9D1-203ENST00000563798 C1orf159Q96HA4 380 aa14.83□□□□□ -0.04
VPS9D1-203ENST00000563798 SEPHS2Q99611 448 aa14.83□□□□□ -0.04
VPS9D1-203ENST00000563798 SH3GL1Q99961 368 aa14.83□□□□□ -0.04
VPS9D1-203ENST00000563798 MRPL37Q9BZE1 423 aaKnown RBP14.83□□□□□ -0.04
VPS9D1-203ENST00000563798 POLR2J2Q9GZM3 115 aaKnown RBP14.83□□□□□ -0.04
VPS9D1-203ENST00000563798 POLR2J3Q9H1A7 115 aaKnown RBP14.83□□□□□ -0.04
VPS9D1-203ENST00000563798 MS4A5Q9H3V2 200 aa14.83□□□□□ -0.04
VPS9D1-203ENST00000563798 DYNLRB1Q9NP97 96 aa14.83□□□□□ -0.04
VPS9D1-203ENST00000563798 A0A0G2JND7 137 aa14.82□□□□□ -0.04
VPS9D1-203ENST00000563798 CENPBD1B2RD01 187 aa14.82□□□□□ -0.04
VPS9D1-203ENST00000563798 C11orf98E9PRG8 122 aa14.82□□□□□ -0.04
VPS9D1-203ENST00000563798 FXYD1O00168 92 aa14.82□□□□□ -0.04
VPS9D1-203ENST00000563798 SERPINI2O75830 405 aa14.82□□□□□ -0.04
VPS9D1-203ENST00000563798 RAB36O95755 333 aa14.82□□□□□ -0.04
VPS9D1-203ENST00000563798 VIMP08670 466 aaKnown RBP14.82□□□□□ -0.04
VPS9D1-203ENST00000563798 ADRA2AP08913 450 aa14.82□□□□□ -0.04
VPS9D1-203ENST00000563798 PGA4P0DJD7 388 aa14.82□□□□□ -0.04
VPS9D1-203ENST00000563798 PGA3P0DJD8 388 aa14.82□□□□□ -0.04
VPS9D1-203ENST00000563798 OR8G3PP0DMU2 310 aa14.82□□□□□ -0.04
VPS9D1-203ENST00000563798 PTDSS1P48651 473 aaKnown RBP14.82□□□□□ -0.04
VPS9D1-203ENST00000563798 CHN2P52757 468 aa14.82□□□□□ -0.04
VPS9D1-203ENST00000563798 RPS23P62266 143 aaKnown RBP14.82□□□□□ -0.04
VPS9D1-203ENST00000563798 HIST3H3Q16695 136 aa14.82□□□□□ -0.04
VPS9D1-203ENST00000563798 FAM120AOSQ5T036 256 aa14.82□□□□□ -0.04
VPS9D1-203ENST00000563798 ZNF584Q8IVC4 421 aa14.82□□□□□ -0.04
VPS9D1-203ENST00000563798 SLC22A24Q8N4F4 322 aa14.82□□□□□ -0.04
VPS9D1-203ENST00000563798 LRRC17Q8N6Y2 441 aa14.82□□□□□ -0.04
VPS9D1-203ENST00000563798 OR8J3Q8NGG0 315 aa14.82□□□□□ -0.04
VPS9D1-203ENST00000563798 SLC26A7Q8TE54 656 aa14.82□□□□□ -0.04
VPS9D1-203ENST00000563798 LIPHQ8WWY8 451 aa14.82□□□□□ -0.04
VPS9D1-203ENST00000563798 MEPEQ9NQ76 525 aaPredicted RBP14.82□□□□□ -0.04
VPS9D1-203ENST00000563798 TMEM38BQ9NVV0 291 aa14.82□□□□□ -0.04
VPS9D1-203ENST00000563798 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP14.82□□□□□ -0.046e-8■■■■□ 24.8
VPS9D1-203ENST00000563798 SH3PXD2BA1X283 911 aa14.81□□□□□ -0.04
VPS9D1-203ENST00000563798 M0R233 179 aa14.81□□□□□ -0.04
VPS9D1-203ENST00000563798 DHHO43323 396 aa14.81□□□□□ -0.04
VPS9D1-203ENST00000563798 RNF13O43567 381 aa14.81□□□□□ -0.04
VPS9D1-203ENST00000563798 MGRN1O60291 552 aa14.81□□□□□ -0.04
VPS9D1-203ENST00000563798 TSPAN19P0C672 248 aa14.81□□□□□ -0.04
VPS9D1-203ENST00000563798 RBM34P42696 430 aaKnown RBP14.81□□□□□ -0.04
VPS9D1-203ENST00000563798 ZNF133P52736 654 aaPredicted RBP14.81□□□□□ -0.04
VPS9D1-203ENST00000563798 UGT2A3Q6UWM9 527 aa14.81□□□□□ -0.04
VPS9D1-203ENST00000563798 FGFBP3Q8TAT2 258 aa14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms