RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 HNF1AP20823 631 aa10.01□□□□□ -0.81
USP3-220ENST00000561381 ALDH3B1P43353 468 aa10.01□□□□□ -0.81
USP3-220ENST00000561381 GIPRP48546 466 aa10.01□□□□□ -0.81
USP3-220ENST00000561381 SEC24CP53992 1094 aa10.01□□□□□ -0.81
USP3-220ENST00000561381 BIDP55957 195 aa10.01□□□□□ -0.81
USP3-220ENST00000561381 PCBP3P57721 371 aaKnown RBP10.01□□□□□ -0.81
USP3-220ENST00000561381 CCNIQ14094 377 aa10.01□□□□□ -0.81
USP3-220ENST00000561381 SELPLGQ14242 412 aa10.01□□□□□ -0.81
USP3-220ENST00000561381 MAD2L1BPQ15013 274 aaPredicted RBP10.01□□□□□ -0.81
USP3-220ENST00000561381 NPTX1Q15818 432 aa10.01□□□□□ -0.81
USP3-220ENST00000561381 DUSP7Q16829 419 aa10.01□□□□□ -0.81
USP3-220ENST00000561381 RUNDC3AQ59EK9 446 aa10.01□□□□□ -0.81
USP3-220ENST00000561381 LINC00114Q6XXX2 140 aa10.01□□□□□ -0.81
USP3-220ENST00000561381 ZNF627Q7L945 461 aa10.01□□□□□ -0.81
USP3-220ENST00000561381 PXKQ7Z7A4 578 aa10.01□□□□□ -0.81
USP3-220ENST00000561381 RANBP3LQ86VV4 465 aaPredicted RBP10.01□□□□□ -0.81
USP3-220ENST00000561381 TSPYL5Q86VY4 417 aaPredicted RBP10.01□□□□□ -0.81
USP3-220ENST00000561381 CARM1Q86X55 608 aa10.01□□□□□ -0.81
USP3-220ENST00000561381 RBM45Q8IUH3 476 aaKnown RBP10.01□□□□□ -0.81
USP3-220ENST00000561381 HIPK4Q8NE63 616 aa10.01□□□□□ -0.81
USP3-220ENST00000561381 GPR32P1Q8NGA4 272 aa10.01□□□□□ -0.81
USP3-220ENST00000561381 OR4D11Q8NGI4 311 aa10.01□□□□□ -0.81
USP3-220ENST00000561381 OR6T1Q8NGN1 323 aa10.01□□□□□ -0.81
USP3-220ENST00000561381 LRRC8CQ8TDW0 803 aa10.01□□□□□ -0.81
USP3-220ENST00000561381 C1orf159Q96HA4 380 aa10.01□□□□□ -0.81
USP3-220ENST00000561381 ARHGDIGQ99819 225 aa10.01□□□□□ -0.81
USP3-220ENST00000561381 TMEM43Q9BTV4 400 aa10.01□□□□□ -0.81
USP3-220ENST00000561381 B3GAT2Q9NPZ5 323 aa10.01□□□□□ -0.81
USP3-220ENST00000561381 REV1Q9UBZ9 1251 aa10.01□□□□□ -0.81
USP3-220ENST00000561381 FBXO9Q9UK97 447 aaPredicted RBP10.01□□□□□ -0.81
USP3-220ENST00000561381 SLC13A4Q9UKG4 626 aa10.01□□□□□ -0.81
USP3-220ENST00000561381 ANGPT4Q9Y264 503 aa10.01□□□□□ -0.81
USP3-220ENST00000561381 NOX1Q9Y5S8 564 aa10.01□□□□□ -0.81
USP3-220ENST00000561381 FAM181BA6NEQ2 426 aa10□□□□□ -0.81
USP3-220ENST00000561381 CPSF4LA6NMK7 179 aaKnown RBP10□□□□□ -0.81
USP3-220ENST00000561381 EVPLLA8MZ36 301 aa10□□□□□ -0.81
USP3-220ENST00000561381 M0QX08 132 aa10□□□□□ -0.81
USP3-220ENST00000561381 SYNGR3O43761 229 aa10□□□□□ -0.81
USP3-220ENST00000561381 LYPD3O95274 346 aa10□□□□□ -0.81
USP3-220ENST00000561381 HPXP02790 462 aa10□□□□□ -0.81
USP3-220ENST00000561381 ADORA3P0DMS8 318 aa10□□□□□ -0.81
USP3-220ENST00000561381 COL8A2P25067 703 aa10□□□□□ -0.81
USP3-220ENST00000561381 CSNK1A1P48729 337 aa10□□□□□ -0.81
USP3-220ENST00000561381 CDH15P55291 814 aa10□□□□□ -0.81
USP3-220ENST00000561381 MTPNP58546 118 aa10□□□□□ -0.81
USP3-220ENST00000561381 RAB1AP62820 205 aa10□□□□□ -0.81
USP3-220ENST00000561381 SQLEQ14534 574 aa10□□□□□ -0.81
USP3-220ENST00000561381 RAB39AQ14964 217 aa10□□□□□ -0.81
USP3-220ENST00000561381 FXNQ16595 210 aa10□□□□□ -0.81
USP3-220ENST00000561381 TRMT5Q32P41 509 aaKnown RBP10□□□□□ -0.81
USP3-220ENST00000561381 ELFN2Q5R3F8 820 aa10□□□□□ -0.81
USP3-220ENST00000561381 AGBL2Q5U5Z8 902 aa10□□□□□ -0.81
USP3-220ENST00000561381 ZNF584Q8IVC4 421 aa10□□□□□ -0.81
USP3-220ENST00000561381 SKA3Q8IX90 412 aa10□□□□□ -0.81
USP3-220ENST00000561381 LRRC17Q8N6Y2 441 aa10□□□□□ -0.81
USP3-220ENST00000561381 LINC01356Q8N9X3 169 aa10□□□□□ -0.81
USP3-220ENST00000561381 OR5J2Q8NH18 312 aa10□□□□□ -0.81
USP3-220ENST00000561381 THOC1Q96FV9 657 aaKnown RBP10□□□□□ -0.81
USP3-220ENST00000561381 CORO2BQ9UQ03 480 aa10□□□□□ -0.81
USP3-220ENST00000561381 M0R233 179 aa9.99□□□□□ -0.81
USP3-220ENST00000561381 KPNA4O00629 521 aaPredicted RBP9.99□□□□□ -0.81
USP3-220ENST00000561381 WNT9BO14905 357 aa9.99□□□□□ -0.81
USP3-220ENST00000561381 CHP2O43745 196 aa9.99□□□□□ -0.81
USP3-220ENST00000561381 ERLIN1O75477 346 aa9.99□□□□□ -0.81
USP3-220ENST00000561381 RAB36O95755 333 aa9.99□□□□□ -0.81
USP3-220ENST00000561381 CH25HO95992 272 aa9.99□□□□□ -0.81
USP3-220ENST00000561381 MT-ATP6P00846 226 aa9.99□□□□□ -0.81
USP3-220ENST00000561381 GLRXP35754 106 aa9.99□□□□□ -0.81
USP3-220ENST00000561381 EVX1P49640 407 aa9.99□□□□□ -0.81
USP3-220ENST00000561381 ATP4BP51164 291 aa9.99□□□□□ -0.81
USP3-220ENST00000561381 MELKQ14680 651 aa9.99□□□□□ -0.81
USP3-220ENST00000561381 ZNF74Q16587 644 aa9.99□□□□□ -0.81
USP3-220ENST00000561381 CYP51A1Q16850 503 aa9.99□□□□□ -0.81
USP3-220ENST00000561381 ALKBH6Q3KRA9 238 aa9.99□□□□□ -0.81
USP3-220ENST00000561381 TTMPQ5BVD1 217 aa9.99□□□□□ -0.81
USP3-220ENST00000561381 ENTPD8Q5MY95 495 aa9.99□□□□□ -0.81
USP3-220ENST00000561381 GKAP1Q5VSY0 366 aaPredicted RBP9.99□□□□□ -0.81
USP3-220ENST00000561381 ZNF613Q6PF04 617 aa9.99□□□□□ -0.81
USP3-220ENST00000561381 LRFN4Q6PJG9 635 aa9.99□□□□□ -0.81
USP3-220ENST00000561381 SLC35D2Q76EJ3 337 aa9.99□□□□□ -0.81
USP3-220ENST00000561381 DHDDSQ86SQ9 333 aa9.99□□□□□ -0.81
USP3-220ENST00000561381 C11orf65Q8NCR3 313 aa9.99□□□□□ -0.81
USP3-220ENST00000561381 BHLHE22Q8NFJ8 381 aaPredicted RBP9.99□□□□□ -0.81
USP3-220ENST00000561381 VANGL1Q8TAA9 524 aaPredicted RBP9.99□□□□□ -0.81
USP3-220ENST00000561381 TMEM54Q969K7 222 aa9.99□□□□□ -0.81
USP3-220ENST00000561381 CGREF1Q99674 301 aa9.99□□□□□ -0.81
USP3-220ENST00000561381 NARFLQ9H6Q4 476 aa9.99□□□□□ -0.81
USP3-220ENST00000561381 TAS2R5Q9NYW4 299 aa9.99□□□□□ -0.81
USP3-220ENST00000561381 GLTPQ9NZD2 209 aa9.99□□□□□ -0.81
USP3-220ENST00000561381 TMEFF2Q9UIK5 374 aaPredicted RBP9.99□□□□□ -0.81
USP3-220ENST00000561381 FMO6PO60774 539 aa9.98□□□□□ -0.81
USP3-220ENST00000561381 NCR1O76036 304 aa9.98□□□□□ -0.81
USP3-220ENST00000561381 UBL3O95164 117 aa9.98□□□□□ -0.81
USP3-220ENST00000561381 OR6A2O95222 327 aa9.98□□□□□ -0.81
USP3-220ENST00000561381 SERPINA5P05154 406 aa9.98□□□□□ -0.81
USP3-220ENST00000561381 NAT2P11245 290 aa9.98□□□□□ -0.81
USP3-220ENST00000561381 CCL2P13500 99 aa9.98□□□□□ -0.81
USP3-220ENST00000561381 CD247P20963 164 aa9.98□□□□□ -0.81
USP3-220ENST00000561381 SRP14P37108 136 aaKnown RBP9.98□□□□□ -0.81
USP3-220ENST00000561381 GALK2Q01415 458 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms