RNA–Protein interactions for RNA: ENST00000545663.5

CLSTN3-216, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-216ENST00000545663 CCL27Q9Y4X3 112 aa12.93□□□□□ -0.34
CLSTN3-216ENST00000545663 K7EIL1 84 aa12.92□□□□□ -0.34
CLSTN3-216ENST00000545663 GPR137BO60478 399 aa12.92□□□□□ -0.34
CLSTN3-216ENST00000545663 EDF1O60869 148 aaKnown RBP12.92□□□□□ -0.34
CLSTN3-216ENST00000545663 UBOX5O94941 541 aa12.92□□□□□ -0.34
CLSTN3-216ENST00000545663 CHRM4P08173 479 aa12.92□□□□□ -0.34
CLSTN3-216ENST00000545663 VIMP08670 466 aaKnown RBP12.92□□□□□ -0.34
CLSTN3-216ENST00000545663 LBPP18428 481 aa12.92□□□□□ -0.34
CLSTN3-216ENST00000545663 GIPRP48546 466 aa12.92□□□□□ -0.34
CLSTN3-216ENST00000545663 POLR2HP52434 150 aaKnown RBP12.92□□□□□ -0.34
CLSTN3-216ENST00000545663 AQP5P55064 265 aa12.92□□□□□ -0.34
CLSTN3-216ENST00000545663 CLDN17P56750 224 aa12.92□□□□□ -0.34
CLSTN3-216ENST00000545663 KLF3P57682 345 aaPredicted RBP12.92□□□□□ -0.34
CLSTN3-216ENST00000545663 GUCY1A3Q02108 690 aa12.92□□□□□ -0.34
CLSTN3-216ENST00000545663 EMX2Q04743 252 aa12.92□□□□□ -0.34
CLSTN3-216ENST00000545663 DBPQ10586 325 aaPredicted RBP12.92□□□□□ -0.34
CLSTN3-216ENST00000545663 PDE7AQ13946 482 aa12.92□□□□□ -0.34
CLSTN3-216ENST00000545663 RGS7BPQ6MZT1 257 aaPredicted RBP12.92□□□□□ -0.34
CLSTN3-216ENST00000545663 TET2Q6N021 2002 aaPredicted RBP12.92□□□□□ -0.34
CLSTN3-216ENST00000545663 OGFOD2Q6N063 350 aa12.92□□□□□ -0.34
CLSTN3-216ENST00000545663 PAQR4Q8N4S7 273 aaPredicted RBP12.92□□□□□ -0.34
CLSTN3-216ENST00000545663 SNX33Q8WV41 574 aa12.92□□□□□ -0.34
CLSTN3-216ENST00000545663 SLC47A1Q96FL8 570 aa12.92□□□□□ -0.34
CLSTN3-216ENST00000545663 ZNF764Q96H86 408 aaPredicted RBP12.92□□□□□ -0.34
CLSTN3-216ENST00000545663 NUF2Q9BZD4 464 aa12.92□□□□□ -0.34
CLSTN3-216ENST00000545663 NSRP1Q9H0G5 558 aaKnown RBP12.92□□□□□ -0.34
CLSTN3-216ENST00000545663 SLCO1B3Q9NPD5 702 aa12.92□□□□□ -0.34
CLSTN3-216ENST00000545663 ASIC5Q9NY37 505 aa12.92□□□□□ -0.34
CLSTN3-216ENST00000545663 NOP53Q9NZM5 478 aaKnown RBP12.92□□□□□ -0.34
CLSTN3-216ENST00000545663 USH1CQ9Y6N9 552 aa12.92□□□□□ -0.34
CLSTN3-216ENST00000545663 DNAH1Q9P2D7 4330 aa12.92□□□□□ -0.34
CLSTN3-216ENST00000545663 IGLV3-9A0A075B6K5 115 aa12.91□□□□□ -0.34
CLSTN3-216ENST00000545663 TBX19O60806 448 aa12.91□□□□□ -0.34
CLSTN3-216ENST00000545663 STX11O75558 287 aa12.91□□□□□ -0.34
CLSTN3-216ENST00000545663 PPP1R3DO95685 299 aa12.91□□□□□ -0.34
CLSTN3-216ENST00000545663 OR8G3PP0DMU2 310 aa12.91□□□□□ -0.34
CLSTN3-216ENST00000545663 KITP10721 976 aa12.91□□□□□ -0.34
CLSTN3-216ENST00000545663 PAX2Q02962 417 aa12.91□□□□□ -0.34
CLSTN3-216ENST00000545663 RAB39AQ14964 217 aa12.91□□□□□ -0.34
CLSTN3-216ENST00000545663 SPDYE7PQ495Y7 208 aa12.91□□□□□ -0.34
CLSTN3-216ENST00000545663 GALNTL6Q49A17 601 aa12.91□□□□□ -0.34
CLSTN3-216ENST00000545663 C6orf136Q5SQH8 315 aa12.91□□□□□ -0.34
CLSTN3-216ENST00000545663 FAM205BPQ63HN1 556 aa12.91□□□□□ -0.34
CLSTN3-216ENST00000545663 Q6ZSV7 163 aa12.91□□□□□ -0.34
CLSTN3-216ENST00000545663 CMIPQ8IY22 773 aa12.91□□□□□ -0.34
CLSTN3-216ENST00000545663 CCDC36Q8IYA8 594 aa12.91□□□□□ -0.34
CLSTN3-216ENST00000545663 NATD1Q8N6N6 113 aa12.91□□□□□ -0.34
CLSTN3-216ENST00000545663 POU5F2Q8N7G0 328 aa12.91□□□□□ -0.34
CLSTN3-216ENST00000545663 FNDC5Q8NAU1 212 aa12.91□□□□□ -0.34
CLSTN3-216ENST00000545663 ANKK1Q8NFD2 765 aa12.91□□□□□ -0.34
CLSTN3-216ENST00000545663 OR5AK3PQ8NH89 298 aa12.91□□□□□ -0.34
CLSTN3-216ENST00000545663 SYNPRQ8TBG9 265 aa12.91□□□□□ -0.34
CLSTN3-216ENST00000545663 CNOT9Q92600 299 aaKnown RBP12.91□□□□□ -0.34
CLSTN3-216ENST00000545663 PHF21AQ96BD5 680 aa12.91□□□□□ -0.34
CLSTN3-216ENST00000545663 ELMOD3Q96FG2 381 aa12.91□□□□□ -0.34
CLSTN3-216ENST00000545663 FCRL1Q96LA6 429 aa12.91□□□□□ -0.34
CLSTN3-216ENST00000545663 PRPF18Q99633 342 aaKnown RBP12.91□□□□□ -0.34
CLSTN3-216ENST00000545663 PATZ1Q9HBE1 687 aaKnown RBP12.91□□□□□ -0.34
CLSTN3-216ENST00000545663 ZNF224Q9NZL3 707 aa12.91□□□□□ -0.34
CLSTN3-216ENST00000545663 MARCOQ9UEW3 520 aaPredicted RBP12.91□□□□□ -0.34
CLSTN3-216ENST00000545663 ZNF99A8MXY4 864 aaPredicted RBP12.9□□□□□ -0.34
CLSTN3-216ENST00000545663 POLR3GO15318 223 aaPredicted RBP12.9□□□□□ -0.34
CLSTN3-216ENST00000545663 SPRY3O43610 288 aa12.9□□□□□ -0.34
CLSTN3-216ENST00000545663 PEX11AO75192 247 aa12.9□□□□□ -0.34
CLSTN3-216ENST00000545663 SLC43A1O75387 559 aa12.9□□□□□ -0.34
CLSTN3-216ENST00000545663 IGHV2-70P01814 119 aa12.9□□□□□ -0.34
CLSTN3-216ENST00000545663 PATE4P0C8F1 98 aa12.9□□□□□ -0.34
CLSTN3-216ENST00000545663 CCL2P13500 99 aa12.9□□□□□ -0.34
CLSTN3-216ENST00000545663 ZNF250P15622 560 aa12.9□□□□□ -0.34
CLSTN3-216ENST00000545663 SDC1P18827 310 aa12.9□□□□□ -0.34
CLSTN3-216ENST00000545663 HTR3AP46098 478 aa12.9□□□□□ -0.34
CLSTN3-216ENST00000545663 RAB1AP62820 205 aa12.9□□□□□ -0.34
CLSTN3-216ENST00000545663 RPL38P63173 70 aaKnown RBP12.9□□□□□ -0.34
CLSTN3-216ENST00000545663 BNIP2Q12982 314 aa12.9□□□□□ -0.34
CLSTN3-216ENST00000545663 EPGNQ6UW88 154 aa12.9□□□□□ -0.34
CLSTN3-216ENST00000545663 ZNF584Q8IVC4 421 aa12.9□□□□□ -0.34
CLSTN3-216ENST00000545663 C1orf174Q8IYL3 243 aa12.9□□□□□ -0.34
CLSTN3-216ENST00000545663 GPR137CQ8N3F9 429 aa12.9□□□□□ -0.34
CLSTN3-216ENST00000545663 TMEM86BQ8N661 226 aa12.9□□□□□ -0.34
CLSTN3-216ENST00000545663 OR2T11Q8NH01 316 aa12.9□□□□□ -0.34
CLSTN3-216ENST00000545663 DYRK2Q92630 601 aa12.9□□□□□ -0.34
CLSTN3-216ENST00000545663 MTERF3Q96E29 417 aa12.9□□□□□ -0.34
CLSTN3-216ENST00000545663 MAELQ96JY0 434 aaKnown RBP12.9□□□□□ -0.34
CLSTN3-216ENST00000545663 DIRC2Q96SL1 478 aa12.9□□□□□ -0.34
CLSTN3-216ENST00000545663 CCDC28BQ9BUN5 200 aa12.9□□□□□ -0.34
CLSTN3-216ENST00000545663 AKTIPQ9H8T0 292 aa12.9□□□□□ -0.34
CLSTN3-216ENST00000545663 NOX4Q9NPH5 578 aa12.9□□□□□ -0.34
CLSTN3-216ENST00000545663 FAM53CQ9NYF3 392 aa12.9□□□□□ -0.34
CLSTN3-216ENST00000545663 GPR160Q9UJ42 338 aa12.9□□□□□ -0.34
CLSTN3-216ENST00000545663 TRIM33Q9UPN9 1127 aa12.9□□□□□ -0.34
CLSTN3-216ENST00000545663 M0R3G1 203 aa12.89□□□□□ -0.35
CLSTN3-216ENST00000545663 IGHV1-46P01743 117 aa12.89□□□□□ -0.35
CLSTN3-216ENST00000545663 PPIAL4GP0DN37 164 aa12.89□□□□□ -0.35
CLSTN3-216ENST00000545663 SELENOVP59797 346 aa12.89□□□□□ -0.35
CLSTN3-216ENST00000545663 EGR3Q06889 387 aa12.89□□□□□ -0.35
CLSTN3-216ENST00000545663 GSTA3Q16772 222 aa12.89□□□□□ -0.35
CLSTN3-216ENST00000545663 RFTN2Q52LD8 501 aaPredicted RBP12.89□□□□□ -0.35
CLSTN3-216ENST00000545663 DEFB121Q5J5C9 76 aa12.89□□□□□ -0.35
CLSTN3-216ENST00000545663 FOXB2Q5VYV0 432 aa12.89□□□□□ -0.35
CLSTN3-216ENST00000545663 AP1ARQ63HQ0 302 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms