RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 RAB39AQ14964 217 aa4□□□□□ -1.77
LIMS1-214ENST00000542845 PCGF3Q3KNV8 242 aa4□□□□□ -1.77
LIMS1-214ENST00000542845 SPDYE7PQ495Y7 208 aa4□□□□□ -1.77
LIMS1-214ENST00000542845 GGTA1PQ4G0N0 100 aa4□□□□□ -1.77
LIMS1-214ENST00000542845 KLHL22Q53GT1 634 aa4□□□□□ -1.77
LIMS1-214ENST00000542845 ESCO2Q56NI9 601 aa4□□□□□ -1.77
LIMS1-214ENST00000542845 GPR157Q5UAW9 335 aa4□□□□□ -1.77
LIMS1-214ENST00000542845 CARD17Q5XLA6 110 aa4□□□□□ -1.77
LIMS1-214ENST00000542845 FAM205BPQ63HN1 556 aa4□□□□□ -1.77
LIMS1-214ENST00000542845 ETV3LQ6ZN32 361 aa4□□□□□ -1.77
LIMS1-214ENST00000542845 C3orf62Q6ZUJ4 267 aa4□□□□□ -1.77
LIMS1-214ENST00000542845 C9orf139Q6ZV77 190 aa4□□□□□ -1.77
LIMS1-214ENST00000542845 CREB3L2Q70SY1 520 aa4□□□□□ -1.77
LIMS1-214ENST00000542845 HMGN2P46Q86SG4 172 aa4□□□□□ -1.77
LIMS1-214ENST00000542845 GPR137CQ8N3F9 429 aa4□□□□□ -1.77
LIMS1-214ENST00000542845 ZFP28Q8NHY6 868 aa4□□□□□ -1.77
LIMS1-214ENST00000542845 R3HDM4Q96D70 268 aa4□□□□□ -1.77
LIMS1-214ENST00000542845 RBMXL1Q96E39 390 aaKnown RBP4□□□□□ -1.77
LIMS1-214ENST00000542845 NEURL3Q96EH8 262 aa4□□□□□ -1.77
LIMS1-214ENST00000542845 ELMOD3Q96FG2 381 aa4□□□□□ -1.77
LIMS1-214ENST00000542845 BOD1Q96IK1 185 aa4□□□□□ -1.77
LIMS1-214ENST00000542845 FAM71F1Q96KD3 344 aaPredicted RBP4□□□□□ -1.77
LIMS1-214ENST00000542845 GPR78Q96P69 363 aa4□□□□□ -1.77
LIMS1-214ENST00000542845 KCNA7Q96RP8 456 aa4□□□□□ -1.77
LIMS1-214ENST00000542845 TBX15Q96SF7 602 aa4□□□□□ -1.77
LIMS1-214ENST00000542845 PCGF1Q9BSM1 259 aa4□□□□□ -1.77
LIMS1-214ENST00000542845 CCDC106Q9BWC9 280 aa4□□□□□ -1.77
LIMS1-214ENST00000542845 TAPBPLQ9BX59 468 aa4□□□□□ -1.77
LIMS1-214ENST00000542845 PATZ1Q9HBE1 687 aaKnown RBP4□□□□□ -1.77
LIMS1-214ENST00000542845 GPR35Q9HC97 309 aa4□□□□□ -1.77
LIMS1-214ENST00000542845 NOX4Q9NPH5 578 aa4□□□□□ -1.77
LIMS1-214ENST00000542845 DCAF16Q9NXF7 216 aa4□□□□□ -1.77
LIMS1-214ENST00000542845 TAS2R7Q9NYW3 318 aa4□□□□□ -1.77
LIMS1-214ENST00000542845 NOL12Q9UGY1 213 aaKnown RBP eCLIP4□□□□□ -1.77
LIMS1-214ENST00000542845 ZNF225Q9UK10 706 aa4□□□□□ -1.77
LIMS1-214ENST00000542845 MKLN1Q9UL63 735 aa4□□□□□ -1.77
LIMS1-214ENST00000542845 FAF1Q9UNN5 650 aaPredicted RBP4□□□□□ -1.77
LIMS1-214ENST00000542845 FOXJ3Q9UPW0 622 aa4□□□□□ -1.77
LIMS1-214ENST00000542845 TRAPPC4Q9Y296 219 aa4□□□□□ -1.77
LIMS1-214ENST00000542845 TMED7Q9Y3B3 224 aa4□□□□□ -1.77
LIMS1-214ENST00000542845 COL7A1Q02388 2944 aa4□□□□□ -1.77
LIMS1-214ENST00000542845 RYR2Q92736 4967 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 CENPVL1A0A0U1RR11 272 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 A0A1W2PPL8 197 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 TCRBV9S1A1TA0A576 114 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 ANKRD61A6NGH8 418 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 FAM159BA6NKW6 160 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 M0R3G1 203 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 PGRMC1O00264 195 aaKnown RBP3.99□□□□□ -1.77
LIMS1-214ENST00000542845 ETV2O00321 342 aaPredicted RBP3.99□□□□□ -1.77
LIMS1-214ENST00000542845 ZNF500O60304 480 aaPredicted RBP3.99□□□□□ -1.77
LIMS1-214ENST00000542845 FCMRO60667 390 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 SLC43A1O75387 559 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 SEC22BO75396 215 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 MT-ND5P03915 603 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 GPIP06744 558 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 CHRM4P08173 479 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 H2AFB1P0C5Y9 115 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 H2AFB2P0C5Z0 115 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 PATE4P0C8F1 98 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 ZNF14P17017 642 aaPredicted RBP3.99□□□□□ -1.77
LIMS1-214ENST00000542845 FKBP2P26885 142 aaKnown RBP3.99□□□□□ -1.77
LIMS1-214ENST00000542845 TACR3P29371 465 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 HSD17B3P37058 310 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 GSTM5P46439 218 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 SH3BGRP55822 239 aaPredicted RBP3.99□□□□□ -1.77
LIMS1-214ENST00000542845 FGF12P61328 243 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 SLC3A1Q07837 685 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 RBBP4Q09028 425 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 BNIP2Q12982 314 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 LCP2Q13094 533 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 HERPUD1Q15011 391 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 RASA2Q15283 850 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 ARHGAP11BQ3KRB8 267 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 MMEL1Q495T6 779 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 ZNF385BQ569K4 471 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 SPRNQ5BIV9 151 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 CASC10Q5T4H9 136 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 DHRS7BQ6IAN0 325 aaPredicted RBP3.99□□□□□ -1.77
LIMS1-214ENST00000542845 SLC35E4Q6ICL7 350 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 METTL2BQ6P1Q9 378 aaKnown RBP3.99□□□□□ -1.77
LIMS1-214ENST00000542845 PGBD2Q6P3X8 592 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 ZCCHC12Q6PEW1 402 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 C6orf89Q6UWU4 347 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 LRRN1Q6UXK5 716 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 CD300LDQ6UXZ3 194 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 GPRIN3Q6ZVF9 776 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 EIF3MQ7L2H7 374 aaKnown RBP3.99□□□□□ -1.77
LIMS1-214ENST00000542845 GRINAQ7Z429 371 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 TMEM139Q8IV31 216 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 KLHL7Q8IXQ5 586 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 POU5F2Q8N7G0 328 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 ZSCAN4Q8NAM6 433 aaPredicted RBP3.99□□□□□ -1.77
LIMS1-214ENST00000542845 OR4S1Q8NGB4 309 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 OR5AN1Q8NGI8 311 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 OR5D16Q8NGK9 328 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 CLHC1Q8NHS4 586 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 ZNF483Q8TF39 744 aaPredicted RBP3.99□□□□□ -1.77
LIMS1-214ENST00000542845 SSMEM1Q8WWF3 244 aa3.99□□□□□ -1.77
LIMS1-214ENST00000542845 GEMIN6Q8WXD5 167 aaKnown RBP3.99□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms