RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 SMPDL3AQ92484 453 aa6.63□□□□□ -1.35
LIMCH1-207ENST00000508466 BHLHE41Q9C0J9 482 aaPredicted RBP6.63□□□□□ -1.35
LIMCH1-207ENST00000508466 EXOGQ9Y2C4 368 aaKnown RBP6.63□□□□□ -1.35
LIMCH1-207ENST00000508466 ADAM18Q9Y3Q7 739 aa6.63□□□□□ -1.35
LIMCH1-207ENST00000508466 PPIAL4AQ9Y536 164 aa6.63□□□□□ -1.35
LIMCH1-207ENST00000508466 NBEAQ8NFP9 2946 aa6.63□□□□□ -1.35
LIMCH1-207ENST00000508466 A0A0G2JMZ2 1700 aa6.63□□□□□ -1.35
LIMCH1-207ENST00000508466 LRRC37A2A6NM11 1700 aa6.63□□□□□ -1.35
LIMCH1-207ENST00000508466 LRRC37AA6NMS7 1700 aa6.63□□□□□ -1.35
LIMCH1-207ENST00000508466 DOCK1Q14185 1865 aa6.63□□□□□ -1.35
LIMCH1-207ENST00000508466 GBF1Q92538 1859 aa6.63□□□□□ -1.35
LIMCH1-207ENST00000508466 GREB1Q4ZG55 1949 aa6.63□□□□□ -1.35
LIMCH1-207ENST00000508466 TRAV8-7A0A075B6U6 113 aa6.63□□□□□ -1.35
LIMCH1-207ENST00000508466 SLC33A1O00400 549 aaPredicted RBP6.63□□□□□ -1.35
LIMCH1-207ENST00000508466 EMC8O43402 210 aa6.63□□□□□ -1.35
LIMCH1-207ENST00000508466 RAMP1O60894 148 aa6.63□□□□□ -1.35
LIMCH1-207ENST00000508466 TBL1XO60907 577 aa6.63□□□□□ -1.35
LIMCH1-207ENST00000508466 IGHA1P01876 353 aa6.63□□□□□ -1.35
LIMCH1-207ENST00000508466 CD53P19397 219 aa6.63□□□□□ -1.35
LIMCH1-207ENST00000508466 NDUFV2P19404 249 aa6.63□□□□□ -1.35
LIMCH1-207ENST00000508466 IMPA1P29218 277 aa6.63□□□□□ -1.35
LIMCH1-207ENST00000508466 EPHB3P54753 998 aa6.63□□□□□ -1.35
LIMCH1-207ENST00000508466 PPP2CBP62714 309 aa6.63□□□□□ -1.35
LIMCH1-207ENST00000508466 PPP2CAP67775 309 aa6.63□□□□□ -1.35
LIMCH1-207ENST00000508466 PLAURQ03405 335 aa6.63□□□□□ -1.35
LIMCH1-207ENST00000508466 PJVKQ0ZLH3 352 aa6.63□□□□□ -1.35
LIMCH1-207ENST00000508466 SLC9A3R2Q15599 337 aa6.63□□□□□ -1.35
LIMCH1-207ENST00000508466 MAPK14Q16539 360 aa6.63□□□□□ -1.35
LIMCH1-207ENST00000508466 MAJINQ3KP22 176 aa6.63□□□□□ -1.35
LIMCH1-207ENST00000508466 ZNF792Q3KQV3 632 aa6.63□□□□□ -1.35
LIMCH1-207ENST00000508466 SPRYD7Q5W111 196 aa6.63□□□□□ -1.35
LIMCH1-207ENST00000508466 FAM71E1Q6IPT2 247 aa6.63□□□□□ -1.35
LIMCH1-207ENST00000508466 CERS6Q6ZMG9 384 aa6.63□□□□□ -1.35
LIMCH1-207ENST00000508466 WDR88Q6ZMY6 472 aa6.63□□□□□ -1.35
LIMCH1-207ENST00000508466 BAP18Q8IXM2 172 aa6.63□□□□□ -1.35
LIMCH1-207ENST00000508466 THEM5Q8N1Q8 247 aa6.63□□□□□ -1.35
LIMCH1-207ENST00000508466 PLPP7Q8NBV4 271 aa6.63□□□□□ -1.35
LIMCH1-207ENST00000508466 ZBTB8AQ96BR9 441 aa6.63□□□□□ -1.35
LIMCH1-207ENST00000508466 KIRREL1Q96J84 757 aa6.63□□□□□ -1.35
LIMCH1-207ENST00000508466 KATNBL1Q9H079 304 aa6.63□□□□□ -1.35
LIMCH1-207ENST00000508466 ATG5Q9H1Y0 275 aa6.63□□□□□ -1.35
LIMCH1-207ENST00000508466 OPN3Q9H1Y3 402 aaPredicted RBP6.63□□□□□ -1.35
LIMCH1-207ENST00000508466 SIRT7Q9NRC8 400 aa6.63□□□□□ -1.35
LIMCH1-207ENST00000508466 CBLN4Q9NTU7 201 aa6.63□□□□□ -1.35
LIMCH1-207ENST00000508466 KLHL42Q9P2K6 505 aa6.63□□□□□ -1.35
LIMCH1-207ENST00000508466 KCNG2Q9UJ96 466 aa6.63□□□□□ -1.35
LIMCH1-207ENST00000508466 HSF4Q9ULV5 492 aa6.63□□□□□ -1.35
LIMCH1-207ENST00000508466 WDR45Q9Y484 360 aa6.63□□□□□ -1.35
LIMCH1-207ENST00000508466 COLEC10Q9Y6Z7 277 aa6.63□□□□□ -1.35
LIMCH1-207ENST00000508466 MPDZO75970 2070 aa6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 DOCK6Q96HP0 2047 aa6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 ARHGAP21Q5T5U3 1957 aa6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 CCDC85CA6NKD9 419 aa6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 PRR32B1ATL7 298 aa6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 PLPP2O43688 288 aa6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 KDELR3O43731 214 aa6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 ZFPL1O95159 310 aa6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 ASGR2P07307 311 aa6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 SBK2P0C263 348 aa6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 GIMD1P0DJR0 217 aa6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 OR8G3PP0DMU2 310 aa6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 C1GALT1C1LP0DN25 315 aa6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 CD33P20138 364 aa6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 NT5EP21589 574 aa6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 CORO1AP31146 461 aaKnown RBP6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 NCBP2P52298 156 aaKnown RBP eCLIP6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 TBPL1P62380 186 aa6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 INSM1Q01101 510 aaPredicted RBP6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 ID2Q02363 134 aa6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 PPP1R1AQ13522 171 aa6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 TNFAIP1Q13829 316 aa6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 C14orf28Q4W4Y0 310 aa6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 LIPNQ5VXI9 398 aa6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 RTL6Q6ICC9 239 aa6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 ACOT7LQ6ZUV0 252 aa6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 GRASPQ7Z6J2 395 aaPredicted RBP6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 KDM8Q8N371 416 aa6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 BPIFB2Q8N4F0 458 aa6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 ZPLD1Q8TCW7 415 aa6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 MR1Q95460 341 aa6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 POP5Q969H6 163 aaKnown RBP6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 FAM46BQ96A09 425 aa6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 TNFRSF13CQ96RJ3 184 aa6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 SEC11CQ9BY50 192 aa6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 CST11Q9H112 138 aa6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 SEC61A2Q9H9S3 476 aa6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 PLA2G2EQ9NZK7 142 aa6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 OR5AC2Q9NZP5 309 aa6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 NCDNQ9UBB6 729 aa6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 MRPS33Q9Y291 106 aaKnown RBP6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 SDK1Q7Z5N4 2213 aa6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 RLFQ13129 1914 aa6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 TGIF2-C20orf24A0A0A6YYL0 155 aa6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 A0A0D9SG52 128 aa6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 C9orf170A2RU37 121 aa6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 SNRPGP15A8MWD9 76 aa6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 NPIPB8E9PQR5 432 aa6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 H7BY64 318 aa6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 GEMIN2O14893 280 aaKnown RBP6.62□□□□□ -1.35
LIMCH1-207ENST00000508466 TMPRSS11DO60235 418 aa6.62□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms