RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 AGBL2Q5U5Z8 902 aa9.95□□□□□ -0.82
USP4-204ENST00000416417 GKAP1Q5VSY0 366 aaPredicted RBP9.95□□□□□ -0.82
USP4-204ENST00000416417 SLC35D2Q76EJ3 337 aa9.95□□□□□ -0.82
USP4-204ENST00000416417 DHDDSQ86SQ9 333 aa9.95□□□□□ -0.82
USP4-204ENST00000416417 ZNF584Q8IVC4 421 aa9.95□□□□□ -0.82
USP4-204ENST00000416417 PAQR4Q8N4S7 273 aaPredicted RBP9.95□□□□□ -0.82
USP4-204ENST00000416417 SCAIQ8N9R8 606 aa9.95□□□□□ -0.82
USP4-204ENST00000416417 ZNF540Q8NDQ6 660 aa9.95□□□□□ -0.82
USP4-204ENST00000416417 OR5J2Q8NH18 312 aa9.95□□□□□ -0.82
USP4-204ENST00000416417 OR6S1Q8NH40 331 aa9.95□□□□□ -0.82
USP4-204ENST00000416417 LRR1Q96L50 414 aa9.95□□□□□ -0.82
USP4-204ENST00000416417 TSPAN32Q96QS1 320 aa9.95□□□□□ -0.82
USP4-204ENST00000416417 TMEM43Q9BTV4 400 aa9.95□□□□□ -0.82
USP4-204ENST00000416417 MOV10Q9HCE1 1003 aaKnown RBP9.95□□□□□ -0.82
USP4-204ENST00000416417 DUSP13Q9UII6 198 aa9.95□□□□□ -0.82
USP4-204ENST00000416417 TMEFF2Q9UIK5 374 aaPredicted RBP9.95□□□□□ -0.82
USP4-204ENST00000416417 SYNGR3O43761 229 aa9.94□□□□□ -0.82
USP4-204ENST00000416417 ERLIN1O75477 346 aa9.94□□□□□ -0.82
USP4-204ENST00000416417 NCR1O76036 304 aa9.94□□□□□ -0.82
USP4-204ENST00000416417 OR6A2O95222 327 aa9.94□□□□□ -0.82
USP4-204ENST00000416417 RAB36O95755 333 aa9.94□□□□□ -0.82
USP4-204ENST00000416417 FAM157BP0CG42 384 aa9.94□□□□□ -0.82
USP4-204ENST00000416417 NAT2P11245 290 aa9.94□□□□□ -0.82
USP4-204ENST00000416417 TNFRSF1BP20333 461 aa9.94□□□□□ -0.82
USP4-204ENST00000416417 SRP14P37108 136 aaKnown RBP9.94□□□□□ -0.82
USP4-204ENST00000416417 PCBP3P57721 371 aaKnown RBP9.94□□□□□ -0.82
USP4-204ENST00000416417 ERVS71-1P61550 626 aa9.94□□□□□ -0.82
USP4-204ENST00000416417 MYBPC1Q00872 1141 aa9.94□□□□□ -0.82
USP4-204ENST00000416417 LRFN4Q6PJG9 635 aa9.94□□□□□ -0.82
USP4-204ENST00000416417 LINC00114Q6XXX2 140 aa9.94□□□□□ -0.82
USP4-204ENST00000416417 PXKQ7Z7A4 578 aa9.94□□□□□ -0.82
USP4-204ENST00000416417 CCDC36Q8IYA8 594 aa9.94□□□□□ -0.82
USP4-204ENST00000416417 LINC01356Q8N9X3 169 aa9.94□□□□□ -0.82
USP4-204ENST00000416417 IL17RDQ8NFM7 739 aa9.94□□□□□ -0.82
USP4-204ENST00000416417 TMEM54Q969K7 222 aa9.94□□□□□ -0.82
USP4-204ENST00000416417 YIPF5Q969M3 257 aa9.94□□□□□ -0.82
USP4-204ENST00000416417 TAS2R5Q9NYW4 299 aa9.94□□□□□ -0.82
USP4-204ENST00000416417 SLC7A7Q9UM01 511 aa9.94□□□□□ -0.82
USP4-204ENST00000416417 FAM157AC9JC47 383 aa9.93□□□□□ -0.82
USP4-204ENST00000416417 M0R233 179 aa9.93□□□□□ -0.82
USP4-204ENST00000416417 RNF13O43567 381 aa9.93□□□□□ -0.82
USP4-204ENST00000416417 SHOX2O60902 331 aaPredicted RBP9.93□□□□□ -0.82
USP4-204ENST00000416417 RGS9O75916 674 aaPredicted RBP9.93□□□□□ -0.82
USP4-204ENST00000416417 CLPTM1O96005 669 aa9.93□□□□□ -0.82
USP4-204ENST00000416417 ITGA2P17301 1181 aa9.93□□□□□ -0.82
USP4-204ENST00000416417 CD247P20963 164 aa9.93□□□□□ -0.82
USP4-204ENST00000416417 ATP4BP51164 291 aa9.93□□□□□ -0.82
USP4-204ENST00000416417 CDH15P55291 814 aa9.93□□□□□ -0.82
USP4-204ENST00000416417 GALK2Q01415 458 aa9.93□□□□□ -0.82
USP4-204ENST00000416417 RUNX1T1Q06455 604 aa9.93□□□□□ -0.82
USP4-204ENST00000416417 ZNF74Q16587 644 aa9.93□□□□□ -0.82
USP4-204ENST00000416417 FXNQ16595 210 aa9.93□□□□□ -0.82
USP4-204ENST00000416417 ZNF627Q7L945 461 aa9.93□□□□□ -0.82
USP4-204ENST00000416417 SLC22A24Q8N4F4 322 aa9.93□□□□□ -0.82
USP4-204ENST00000416417 C11orf65Q8NCR3 313 aa9.93□□□□□ -0.82
USP4-204ENST00000416417 CLDND2Q8NHS1 167 aa9.93□□□□□ -0.82
USP4-204ENST00000416417 ADAMTS16Q8TE57 1224 aa9.93□□□□□ -0.82
USP4-204ENST00000416417 DYDC1Q8WWB3 177 aa9.93□□□□□ -0.82
USP4-204ENST00000416417 GTF3AQ92664 365 aaKnown RBP9.93□□□□□ -0.82
USP4-204ENST00000416417 TAMM41Q96BW9 452 aa9.93□□□□□ -0.82
USP4-204ENST00000416417 CGREF1Q99674 301 aa9.93□□□□□ -0.82
USP4-204ENST00000416417 TREM2Q9NZC2 230 aa9.93□□□□□ -0.82
USP4-204ENST00000416417 GLTPQ9NZD2 209 aa9.93□□□□□ -0.82
USP4-204ENST00000416417 LEF1Q9UJU2 399 aaPredicted RBP9.93□□□□□ -0.82
USP4-204ENST00000416417 CORO2BQ9UQ03 480 aa9.93□□□□□ -0.82
USP4-204ENST00000416417 GMEB1Q9Y692 573 aa9.93□□□□□ -0.82
USP4-204ENST00000416417 A0A1W2PPW3 197 aa9.92□□□□□ -0.82
USP4-204ENST00000416417 HAX1O00165 279 aa9.92□□□□□ -0.82
USP4-204ENST00000416417 CHP2O43745 196 aa9.92□□□□□ -0.82
USP4-204ENST00000416417 UMPSP11172 480 aa9.92□□□□□ -0.82
USP4-204ENST00000416417 GLRXP35754 106 aa9.92□□□□□ -0.82
USP4-204ENST00000416417 MAGEB1P43366 347 aa9.92□□□□□ -0.82
USP4-204ENST00000416417 GPR6P46095 362 aaPredicted RBP9.92□□□□□ -0.82
USP4-204ENST00000416417 SF3A3Q12874 501 aaKnown RBP eCLIP9.92□□□□□ -0.82
USP4-204ENST00000416417 HNRNPA0Q13151 305 aaKnown RBP9.92□□□□□ -0.82
USP4-204ENST00000416417 NFYCQ13952 458 aa9.92□□□□□ -0.82
USP4-204ENST00000416417 ZNF613Q6PF04 617 aa9.92□□□□□ -0.82
USP4-204ENST00000416417 TTC33Q6PID6 262 aaPredicted RBP9.92□□□□□ -0.82
USP4-204ENST00000416417 ICA1LQ8NDH6 482 aa9.92□□□□□ -0.82
USP4-204ENST00000416417 ATP6V1G3Q96LB4 118 aa9.92□□□□□ -0.82
USP4-204ENST00000416417 RNF121Q9H920 327 aa9.92□□□□□ -0.82
USP4-204ENST00000416417 ZNF275Q9NSD4 429 aaPredicted RBP9.92□□□□□ -0.82
USP4-204ENST00000416417 NDUFAF1Q9Y375 327 aa9.92□□□□□ -0.82
USP4-204ENST00000416417 SPEF1Q9Y4P9 236 aa9.92□□□□□ -0.82
USP4-204ENST00000416417 BLOC1S5-TXNDC5H3BN57 136 aa9.92□□□□□ -0.82
USP4-204ENST00000416417 DHHO43323 396 aa9.92□□□□□ -0.82
USP4-204ENST00000416417 CDC14BO60729 498 aa9.92□□□□□ -0.82
USP4-204ENST00000416417 UBL3O95164 117 aa9.92□□□□□ -0.82
USP4-204ENST00000416417 MT-ATP6P00846 226 aa9.92□□□□□ -0.82
USP4-204ENST00000416417 F13BP05160 661 aa9.92□□□□□ -0.82
USP4-204ENST00000416417 QDPRP09417 244 aa9.92□□□□□ -0.82
USP4-204ENST00000416417 THBS2P35442 1172 aa9.92□□□□□ -0.82
USP4-204ENST00000416417 CRYBA2P53672 197 aa9.92□□□□□ -0.82
USP4-204ENST00000416417 GLO1Q04760 184 aa9.92□□□□□ -0.82
USP4-204ENST00000416417 SWT1Q5T5J6 900 aaKnown RBP9.92□□□□□ -0.82
USP4-204ENST00000416417 THSD4Q6ZMP0 1018 aa9.92□□□□□ -0.82
USP4-204ENST00000416417 ZNF771Q7L3S4 317 aaPredicted RBP9.92□□□□□ -0.82
USP4-204ENST00000416417 SYT14Q8NB59 555 aa9.92□□□□□ -0.82
USP4-204ENST00000416417 BHLHE22Q8NFJ8 381 aaPredicted RBP9.92□□□□□ -0.82
USP4-204ENST00000416417 OR4K5Q8NGD3 323 aa9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms