RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 RTN4RQ9BZR6 473 aa9.16□□□□□ -0.94
VPS53-202ENST00000389040 RERGLQ9H628 205 aa9.16□□□□□ -0.94
VPS53-202ENST00000389040 SMURF1Q9HCE7 757 aa9.16□□□□□ -0.94
VPS53-202ENST00000389040 MED11Q9P086 117 aa9.16□□□□□ -0.94
VPS53-202ENST00000389040 FBXL2Q9UKC9 423 aa9.16□□□□□ -0.94
VPS53-202ENST00000389040 CCDC182A6NF36 153 aa9.15□□□□□ -0.94
VPS53-202ENST00000389040 FAM166BA8MTA8 275 aa9.15□□□□□ -0.94
VPS53-202ENST00000389040 IFNGP01579 166 aa9.15□□□□□ -0.94
VPS53-202ENST00000389040 SLC9A3P48764 834 aa9.15□□□□□ -0.94
VPS53-202ENST00000389040 CASP6P55212 293 aa9.15□□□□□ -0.94
VPS53-202ENST00000389040 RPS7P62081 194 aaKnown RBP9.15□□□□□ -0.94
VPS53-202ENST00000389040 RUNX1T1Q06455 604 aa9.15□□□□□ -0.94
VPS53-202ENST00000389040 CRMP1Q14194 572 aa9.15□□□□□ -0.94
VPS53-202ENST00000389040 ZNF362Q5T0B9 420 aaPredicted RBP9.15□□□□□ -0.94
VPS53-202ENST00000389040 WBP2NLQ6ICG8 309 aa9.15□□□□□ -0.94
VPS53-202ENST00000389040 CD200R1LQ6Q8B3 271 aa9.15□□□□□ -0.94
VPS53-202ENST00000389040 GFRALQ6UXV0 394 aa9.15□□□□□ -0.94
VPS53-202ENST00000389040 TMPRSS11AQ6ZMR5 421 aa9.15□□□□□ -0.94
VPS53-202ENST00000389040 PLEKHG7Q6ZR37 379 aa9.15□□□□□ -0.94
VPS53-202ENST00000389040 CCDC190Q86UF4 302 aa9.15□□□□□ -0.94
VPS53-202ENST00000389040 GTPBP8Q8N3Z3 284 aaPredicted RBP9.15□□□□□ -0.94
VPS53-202ENST00000389040 ZFP41Q8N8Y5 198 aa9.15□□□□□ -0.94
VPS53-202ENST00000389040 GATSQ8NAP1 163 aa9.15□□□□□ -0.94
VPS53-202ENST00000389040 OR14L1PQ8NHC6 308 aa9.15□□□□□ -0.94
VPS53-202ENST00000389040 GPR119Q8TDV5 335 aa9.15□□□□□ -0.94
VPS53-202ENST00000389040 CEP19Q96LK0 163 aa9.15□□□□□ -0.94
VPS53-202ENST00000389040 MED18Q9BUE0 208 aa9.15□□□□□ -0.94
VPS53-202ENST00000389040 ALG8Q9BVK2 526 aa9.15□□□□□ -0.94
VPS53-202ENST00000389040 SLC19A3Q9BZV2 496 aa9.15□□□□□ -0.94
VPS53-202ENST00000389040 ABCB10Q9NRK6 738 aa9.15□□□□□ -0.94
VPS53-202ENST00000389040 INPP5EQ9NRR6 644 aa9.15□□□□□ -0.94
VPS53-202ENST00000389040 ZNF835Q9Y2P0 537 aa9.15□□□□□ -0.94
VPS53-202ENST00000389040 CAB39Q9Y376 341 aaPredicted RBP9.15□□□□□ -0.94
VPS53-202ENST00000389040 ATRXP46100 2492 aa9.15□□□□□ -0.94
VPS53-202ENST00000389040 IQCMA0A1B0GVH7 501 aa9.15□□□□□ -0.95
VPS53-202ENST00000389040 TRDV1A0A1B0GX56 115 aa9.15□□□□□ -0.95
VPS53-202ENST00000389040 ISPDA4D126 451 aa9.15□□□□□ -0.95
VPS53-202ENST00000389040 C12orf71A8MTZ7 269 aa9.15□□□□□ -0.95
VPS53-202ENST00000389040 CTDSP2O14595 271 aa9.15□□□□□ -0.95
VPS53-202ENST00000389040 LRRTM2O43300 516 aa9.15□□□□□ -0.95
VPS53-202ENST00000389040 NDUFB2O95178 105 aa9.15□□□□□ -0.95
VPS53-202ENST00000389040 GABRA1P14867 456 aa9.15□□□□□ -0.95
VPS53-202ENST00000389040 CPN1P15169 458 aa9.15□□□□□ -0.95
VPS53-202ENST00000389040 SLC2A5P22732 501 aa9.15□□□□□ -0.95
VPS53-202ENST00000389040 FGF9P31371 208 aaPredicted RBP9.15□□□□□ -0.95
VPS53-202ENST00000389040 PTGS2P35354 604 aa9.15□□□□□ -0.95
VPS53-202ENST00000389040 RFC3P40938 356 aa9.15□□□□□ -0.95
VPS53-202ENST00000389040 SLC16A1P53985 500 aa9.15□□□□□ -0.95
VPS53-202ENST00000389040 GFRA1P56159 465 aa9.15□□□□□ -0.95
VPS53-202ENST00000389040 FABP5Q01469 135 aa9.15□□□□□ -0.95
VPS53-202ENST00000389040 BDH1Q02338 343 aa9.15□□□□□ -0.95
VPS53-202ENST00000389040 MXD1Q05195 221 aa9.15□□□□□ -0.95
VPS53-202ENST00000389040 TOMM20Q15388 145 aa9.15□□□□□ -0.95
VPS53-202ENST00000389040 PLPPR5Q32ZL2 321 aa9.15□□□□□ -0.95
VPS53-202ENST00000389040 PRR30Q53SZ7 412 aaPredicted RBP9.15□□□□□ -0.95
VPS53-202ENST00000389040 VASNQ6EMK4 673 aa9.15□□□□□ -0.95
VPS53-202ENST00000389040 OR5M10Q6IEU7 315 aa9.15□□□□□ -0.95
VPS53-202ENST00000389040 KLBQ86Z14 1044 aa9.15□□□□□ -0.95
VPS53-202ENST00000389040 TMEM99Q8N816 258 aa9.15□□□□□ -0.95
VPS53-202ENST00000389040 OR10H4Q8NGA5 316 aa9.15□□□□□ -0.95
VPS53-202ENST00000389040 TEAD3Q99594 435 aa9.15□□□□□ -0.95
VPS53-202ENST00000389040 DEFB127Q9H1M4 99 aa9.15□□□□□ -0.95
VPS53-202ENST00000389040 OR51V1Q9H2C8 321 aa9.15□□□□□ -0.95
VPS53-202ENST00000389040 CHRNA9Q9UGM1 479 aa9.15□□□□□ -0.95
VPS53-202ENST00000389040 GSTK1Q9Y2Q3 226 aa9.15□□□□□ -0.95
VPS53-202ENST00000389040 UGT2A1Q9Y4X1 527 aa9.15□□□□□ -0.95
VPS53-202ENST00000389040 TNFSF12-TNFSF13A0A0A6YY99 330 aa9.14□□□□□ -0.95
VPS53-202ENST00000389040 DAPL1A0PJW8 107 aa9.14□□□□□ -0.95
VPS53-202ENST00000389040 FUOMA2VDF0 154 aa9.14□□□□□ -0.95
VPS53-202ENST00000389040 ELOA3DA6NLF2 546 aaPredicted RBP9.14□□□□□ -0.95
VPS53-202ENST00000389040 GJE1A6NN92 205 aa9.14□□□□□ -0.95
VPS53-202ENST00000389040 AHRRA9YTQ3 701 aa9.14□□□□□ -0.95
VPS53-202ENST00000389040 PRRG2O14669 202 aa9.14□□□□□ -0.95
VPS53-202ENST00000389040 TBX1O43435 398 aa9.14□□□□□ -0.95
VPS53-202ENST00000389040 OIP5O43482 229 aa9.14□□□□□ -0.95
VPS53-202ENST00000389040 NUDT14O95848 222 aa9.14□□□□□ -0.95
VPS53-202ENST00000389040 PNMTP11086 282 aa9.14□□□□□ -0.95
VPS53-202ENST00000389040 CELP19835 753 aa9.14□□□□□ -0.95
VPS53-202ENST00000389040 APOBEC1P41238 236 aaKnown RBP9.14□□□□□ -0.95
VPS53-202ENST00000389040 CCR4P51679 360 aa9.14□□□□□ -0.95
VPS53-202ENST00000389040 ELOA3BQ3SY89 546 aa9.14□□□□□ -0.95
VPS53-202ENST00000389040 CBLN3Q6UW01 205 aa9.14□□□□□ -0.95
VPS53-202ENST00000389040 ZNF554Q86TJ5 538 aa9.14□□□□□ -0.95
VPS53-202ENST00000389040 LYSMD2Q8IV50 215 aa9.14□□□□□ -0.95
VPS53-202ENST00000389040 LRRC17Q8N6Y2 441 aa9.14□□□□□ -0.95
VPS53-202ENST00000389040 ARIH2OSQ8N7S6 290 aa9.14□□□□□ -0.95
VPS53-202ENST00000389040 CYB561A3Q8NBI2 242 aa9.14□□□□□ -0.95
VPS53-202ENST00000389040 ATP6V1C2Q8NEY4 427 aa9.14□□□□□ -0.95
VPS53-202ENST00000389040 ELOA3Q8NG57 546 aa9.14□□□□□ -0.95
VPS53-202ENST00000389040 FAM57AQ8TBR7 257 aa9.14□□□□□ -0.95
VPS53-202ENST00000389040 ERMAPQ96PL5 475 aaPredicted RBP9.14□□□□□ -0.95
VPS53-202ENST00000389040 COQ7Q99807 217 aa9.14□□□□□ -0.95
VPS53-202ENST00000389040 SLC30A2Q9BRI3 323 aa9.14□□□□□ -0.95
VPS53-202ENST00000389040 TMED9Q9BVK6 235 aa9.14□□□□□ -0.95
VPS53-202ENST00000389040 TPK1Q9H3S4 243 aa9.14□□□□□ -0.95
VPS53-202ENST00000389040 EXO5Q9H790 373 aa9.14□□□□□ -0.95
VPS53-202ENST00000389040 ISG20L2Q9H9L3 353 aaKnown RBP9.14□□□□□ -0.95
VPS53-202ENST00000389040 ADGRL4Q9HBW9 690 aa9.14□□□□□ -0.95
VPS53-202ENST00000389040 SERINC1Q9NRX5 453 aa9.14□□□□□ -0.95
VPS53-202ENST00000389040 PAQR5Q9NXK6 330 aaPredicted RBP9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms