RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 BPIFCQ8NFQ6 507 aa20.35■□□□□ 0.85
TRIM28-202ENST00000341753 TMEM106AQ96A25 262 aa20.35■□□□□ 0.85
TRIM28-202ENST00000341753 DNAJA3Q96EY1 480 aa20.35■□□□□ 0.85
TRIM28-202ENST00000341753 PELOQ9BRX2 385 aaKnown RBP20.35■□□□□ 0.85
TRIM28-202ENST00000341753 APOOQ9BUR5 198 aa20.35■□□□□ 0.85
TRIM28-202ENST00000341753 LMAN2LQ9H0V9 348 aa20.35■□□□□ 0.85
TRIM28-202ENST00000341753 EML5Q05BV3 1969 aa20.35■□□□□ 0.85
TRIM28-202ENST00000341753 DCTN6O00399 190 aa20.35■□□□□ 0.85
TRIM28-202ENST00000341753 KIR2DL1P43626 348 aaPredicted RBP20.35■□□□□ 0.85
TRIM28-202ENST00000341753 MC2RQ01718 297 aa20.35■□□□□ 0.85
TRIM28-202ENST00000341753 ATXN7L3Q14CW9 347 aaPredicted RBP20.35■□□□□ 0.85
TRIM28-202ENST00000341753 TMEM196Q5HYL7 178 aa20.35■□□□□ 0.85
TRIM28-202ENST00000341753 OR6K3Q8NGY3 331 aa20.35■□□□□ 0.85
TRIM28-202ENST00000341753 NT5CQ8TCD5 201 aa20.35■□□□□ 0.85
TRIM28-202ENST00000341753 RPS4Y2Q8TD47 263 aa20.35■□□□□ 0.85
TRIM28-202ENST00000341753 ZNF75AQ96N20 296 aa20.35■□□□□ 0.85
TRIM28-202ENST00000341753 TMEM185BQ9H7F4 350 aa20.35■□□□□ 0.85
TRIM28-202ENST00000341753 APMAPQ9HDC9 416 aa20.35■□□□□ 0.85
TRIM28-202ENST00000341753 HPF1Q9NWY4 346 aa20.35■□□□□ 0.85
TRIM28-202ENST00000341753 GGT3PA6NGU5 568 aa20.34■□□□□ 0.85
TRIM28-202ENST00000341753 PRKNO60260 465 aaPredicted RBP20.34■□□□□ 0.85
TRIM28-202ENST00000341753 GLCEO94923 617 aa20.34■□□□□ 0.85
TRIM28-202ENST00000341753 AQP2P41181 271 aa20.34■□□□□ 0.85
TRIM28-202ENST00000341753 RBM34P42696 430 aaKnown RBP20.34■□□□□ 0.85
TRIM28-202ENST00000341753 SHHQ15465 462 aa20.34■□□□□ 0.85
TRIM28-202ENST00000341753 ZNF776Q68DI1 518 aaPredicted RBP20.34■□□□□ 0.85
TRIM28-202ENST00000341753 DPY19L2P2Q6ZN68 376 aa20.34■□□□□ 0.85
TRIM28-202ENST00000341753 ZNF546Q86UE3 836 aa20.34■□□□□ 0.85
TRIM28-202ENST00000341753 C10orf53Q8N6V4 93 aa20.34■□□□□ 0.85
TRIM28-202ENST00000341753 OR6N1Q8NGY5 312 aa20.34■□□□□ 0.85
TRIM28-202ENST00000341753 MRPL48Q96GC5 212 aaKnown RBP20.34■□□□□ 0.85
TRIM28-202ENST00000341753 FBXO4Q9UKT5 387 aa20.34■□□□□ 0.85
TRIM28-202ENST00000341753 ZNF337Q9Y3M9 751 aa20.34■□□□□ 0.85
TRIM28-202ENST00000341753 ETV7Q9Y603 341 aa20.34■□□□□ 0.85
TRIM28-202ENST00000341753 HRKO00198 91 aa20.34■□□□□ 0.85
TRIM28-202ENST00000341753 CTAG2O75638 210 aa20.34■□□□□ 0.85
TRIM28-202ENST00000341753 LDOC1O95751 146 aaPredicted RBP20.34■□□□□ 0.85
TRIM28-202ENST00000341753 SMIM10L1P0DMW3 83 aa20.34■□□□□ 0.85
TRIM28-202ENST00000341753 LIPCP11150 499 aa20.34■□□□□ 0.85
TRIM28-202ENST00000341753 ADPRHP54922 357 aa20.34■□□□□ 0.85
TRIM28-202ENST00000341753 ITPRIPL2Q3MIP1 535 aa20.34■□□□□ 0.85
TRIM28-202ENST00000341753 NKAIN2Q5VXU1 208 aa20.34■□□□□ 0.85
TRIM28-202ENST00000341753 ULK3Q6PHR2 472 aa20.34■□□□□ 0.85
TRIM28-202ENST00000341753 ZNF227Q86WZ6 799 aa20.34■□□□□ 0.85
TRIM28-202ENST00000341753 ZNF676Q8N7Q3 588 aa20.34■□□□□ 0.85
TRIM28-202ENST00000341753 TSACCQ96A04 125 aaPredicted RBP20.34■□□□□ 0.85
TRIM28-202ENST00000341753 CCDC74AQ96AQ1 378 aa20.34■□□□□ 0.85
TRIM28-202ENST00000341753 SMIM10Q96HG1 83 aa20.34■□□□□ 0.85
TRIM28-202ENST00000341753 NMNAT2Q9BZQ4 307 aa20.34■□□□□ 0.85
TRIM28-202ENST00000341753 PLCL2Q9UPR0 1127 aa20.34■□□□□ 0.85
TRIM28-202ENST00000341753 SLC17A4Q9Y2C5 497 aa20.34■□□□□ 0.85
TRIM28-202ENST00000341753 AQP8O94778 261 aa20.33■□□□□ 0.85
TRIM28-202ENST00000341753 GPR75O95800 540 aa20.33■□□□□ 0.85
TRIM28-202ENST00000341753 MTIF3Q9H2K0 278 aaKnown RBP20.33■□□□□ 0.85
TRIM28-202ENST00000341753 DTX4Q9Y2E6 619 aa20.33■□□□□ 0.85
TRIM28-202ENST00000341753 WDPCPO95876 746 aa20.33■□□□□ 0.85
TRIM28-202ENST00000341753 CSF1P09603 554 aa20.33■□□□□ 0.85
TRIM28-202ENST00000341753 RPA2P15927 270 aa20.33■□□□□ 0.85
TRIM28-202ENST00000341753 LUMP51884 338 aaPredicted RBP20.33■□□□□ 0.85
TRIM28-202ENST00000341753 AKR1C2P52895 323 aa20.33■□□□□ 0.85
TRIM28-202ENST00000341753 PSG6Q00889 435 aa20.33■□□□□ 0.85
TRIM28-202ENST00000341753 AKR1C1Q04828 323 aa20.33■□□□□ 0.85
TRIM28-202ENST00000341753 RIPPLY1Q0D2K3 151 aa20.33■□□□□ 0.85
TRIM28-202ENST00000341753 EIF4E3Q8N5X7 224 aaKnown RBP20.33■□□□□ 0.85
TRIM28-202ENST00000341753 GATSQ8NAP1 163 aa20.33■□□□□ 0.85
TRIM28-202ENST00000341753 MNTQ99583 582 aa20.33■□□□□ 0.85
TRIM28-202ENST00000341753 FBXL21Q9UKT6 434 aa20.33■□□□□ 0.85
TRIM28-202ENST00000341753 COLEC10Q9Y6Z7 277 aa20.33■□□□□ 0.85
TRIM28-202ENST00000341753 M0QYG6 137 aa20.33■□□□□ 0.84
TRIM28-202ENST00000341753 F13BP05160 661 aa20.33■□□□□ 0.84
TRIM28-202ENST00000341753 RAB3AP20336 220 aa20.33■□□□□ 0.84
TRIM28-202ENST00000341753 MAP3K8P41279 467 aa20.33■□□□□ 0.84
TRIM28-202ENST00000341753 LINC00114Q6XXX2 140 aa20.33■□□□□ 0.84
TRIM28-202ENST00000341753 KRT77Q7Z794 578 aa20.33■□□□□ 0.84
TRIM28-202ENST00000341753 OBP2AQ9NY56 170 aa20.33■□□□□ 0.84
TRIM28-202ENST00000341753 STEAP1Q9UHE8 339 aa20.33■□□□□ 0.84
TRIM28-202ENST00000341753 CDV3Q9UKY7 258 aaKnown RBP20.33■□□□□ 0.84
TRIM28-202ENST00000341753 ARID1BQ8NFD5 2236 aaPredicted RBP20.32■□□□□ 0.84
TRIM28-202ENST00000341753 A0A087WV62 115 aa20.32■□□□□ 0.84
TRIM28-202ENST00000341753 GPR89AB7ZAQ6 455 aa20.32■□□□□ 0.84
TRIM28-202ENST00000341753 CCSO14618 274 aa20.32■□□□□ 0.84
TRIM28-202ENST00000341753 GPR89BP0CG08 455 aa20.32■□□□□ 0.84
TRIM28-202ENST00000341753 AKAIN1P0CW23 69 aa20.32■□□□□ 0.84
TRIM28-202ENST00000341753 POU3F4P49335 361 aa20.32■□□□□ 0.84
TRIM28-202ENST00000341753 STARP49675 285 aa20.32■□□□□ 0.84
TRIM28-202ENST00000341753 ENPP2Q13822 863 aa20.32■□□□□ 0.84
TRIM28-202ENST00000341753 LY6G6FQ5SQ64 297 aa20.32■□□□□ 0.84
TRIM28-202ENST00000341753 ENPP7Q6UWV6 458 aa20.32■□□□□ 0.84
TRIM28-202ENST00000341753 LRRC69Q6ZNQ3 347 aa20.32■□□□□ 0.84
TRIM28-202ENST00000341753 FRMD1Q8N878 549 aa20.32■□□□□ 0.84
TRIM28-202ENST00000341753 ATOH1Q92858 354 aaPredicted RBP20.32■□□□□ 0.84
TRIM28-202ENST00000341753 SLC6A15Q9H2J7 730 aa20.32■□□□□ 0.84
TRIM28-202ENST00000341753 KIR3DX1Q9H7L2 352 aa20.32■□□□□ 0.84
TRIM28-202ENST00000341753 PILRAQ9UKJ1 303 aa20.32■□□□□ 0.84
TRIM28-202ENST00000341753 PRR19A6NJB7 356 aa20.32■□□□□ 0.84
TRIM28-202ENST00000341753 RPL35P42766 123 aaKnown RBP20.32■□□□□ 0.84
TRIM28-202ENST00000341753 AKR1D1P51857 326 aa20.32■□□□□ 0.84
TRIM28-202ENST00000341753 FCRL6Q6DN72 434 aa20.32■□□□□ 0.84
TRIM28-202ENST00000341753 TMEM88Q6PEY1 159 aa20.32■□□□□ 0.84
TRIM28-202ENST00000341753 DNM1P46Q6ZS02 220 aa20.32■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms