RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 CCL11P51671 97 aa11.78□□□□□ -0.52
USP40-201ENST00000251722 LIM2P55344 173 aa11.78□□□□□ -0.52
USP40-201ENST00000251722 SUMO3P55854 103 aaPredicted RBP11.78□□□□□ -0.52
USP40-201ENST00000251722 HBA1P69905 142 aa11.78□□□□□ -0.52
USP40-201ENST00000251722 FAM53BQ14153 422 aa11.78□□□□□ -0.52
USP40-201ENST00000251722 MFSD12Q6NUT3 480 aa11.78□□□□□ -0.52
USP40-201ENST00000251722 KIAA1211LQ6NV74 962 aa11.78□□□□□ -0.52
USP40-201ENST00000251722 LURAP1LQ8IV03 231 aa11.78□□□□□ -0.52
USP40-201ENST00000251722 PAQR8Q8TEZ7 354 aa11.78□□□□□ -0.52
USP40-201ENST00000251722 MRGPRX1Q96LB2 322 aa11.78□□□□□ -0.52
USP40-201ENST00000251722 FAM117AQ9C073 453 aa11.78□□□□□ -0.52
USP40-201ENST00000251722 PDFQ9HBH1 243 aa11.78□□□□□ -0.52
USP40-201ENST00000251722 GPR83Q9NYM4 423 aa11.78□□□□□ -0.52
USP40-201ENST00000251722 REV1Q9UBZ9 1251 aa11.78□□□□□ -0.52
USP40-201ENST00000251722 FIGNL2A6NMB9 653 aa11.78□□□□□ -0.52
USP40-201ENST00000251722 POM121CA8CG34 1229 aa11.78□□□□□ -0.52
USP40-201ENST00000251722 TIMM8AO60220 97 aaPredicted RBP11.78□□□□□ -0.52
USP40-201ENST00000251722 AKAIN1P0CW23 69 aa11.78□□□□□ -0.52
USP40-201ENST00000251722 PTNP21246 168 aa11.78□□□□□ -0.52
USP40-201ENST00000251722 CLDN17P56750 224 aa11.78□□□□□ -0.52
USP40-201ENST00000251722 SNTB1Q13884 538 aaKnown RBP11.78□□□□□ -0.52
USP40-201ENST00000251722 MED25Q71SY5 747 aa11.78□□□□□ -0.52
USP40-201ENST00000251722 CPNE4Q96A23 557 aaPredicted RBP11.78□□□□□ -0.52
USP40-201ENST00000251722 TSPAN10Q9H1Z9 355 aaPredicted RBP11.78□□□□□ -0.52
USP40-201ENST00000251722 ZNF286AQ9HBT8 521 aa11.78□□□□□ -0.52
USP40-201ENST00000251722 MIOXQ9UGB7 285 aa11.78□□□□□ -0.52
USP40-201ENST00000251722 STEAP1Q9UHE8 339 aa11.78□□□□□ -0.52
USP40-201ENST00000251722 GABARAPO95166 117 aa11.77□□□□□ -0.52
USP40-201ENST00000251722 MPIG6BO95866 241 aa11.77□□□□□ -0.52
USP40-201ENST00000251722 RNF144AP50876 292 aaPredicted RBP11.77□□□□□ -0.52
USP40-201ENST00000251722 TAS2R20P59543 309 aa11.77□□□□□ -0.52
USP40-201ENST00000251722 POLR2GP62487 172 aaKnown RBP eCLIP11.77□□□□□ -0.52
USP40-201ENST00000251722 MLLT11Q13015 90 aaPredicted RBP11.77□□□□□ -0.52
USP40-201ENST00000251722 PIP5KL1Q5T9C9 394 aa11.77□□□□□ -0.52
USP40-201ENST00000251722 MOB3CQ70IA8 216 aa11.77□□□□□ -0.52
USP40-201ENST00000251722 VRK2Q86Y07 508 aa11.77□□□□□ -0.52
USP40-201ENST00000251722 DOK4Q8TEW6 326 aa11.77□□□□□ -0.52
USP40-201ENST00000251722 RSPRY1Q96DX4 576 aa11.77□□□□□ -0.52
USP40-201ENST00000251722 THOC3Q96J01 351 aaKnown RBP11.77□□□□□ -0.52
USP40-201ENST00000251722 CRISPLD2Q9H0B8 497 aa11.77□□□□□ -0.52
USP40-201ENST00000251722 NDUFS8O00217 210 aa11.77□□□□□ -0.52
USP40-201ENST00000251722 AMY2AP04746 511 aa11.77□□□□□ -0.52
USP40-201ENST00000251722 CD300LGQ6UXG3 332 aa11.77□□□□□ -0.52
USP40-201ENST00000251722 NLRC3Q7RTR2 1065 aa11.77□□□□□ -0.52
USP40-201ENST00000251722 ADGRG5Q8IZF4 528 aa11.77□□□□□ -0.52
USP40-201ENST00000251722 DUSP19Q8WTR2 217 aa11.77□□□□□ -0.52
USP40-201ENST00000251722 ST8SIA1Q92185 356 aa11.77□□□□□ -0.52
USP40-201ENST00000251722 APH1AQ96BI3 265 aa11.77□□□□□ -0.52
USP40-201ENST00000251722 ZNF583Q96ND8 569 aa11.77□□□□□ -0.52
USP40-201ENST00000251722 FGF22Q9HCT0 170 aa11.77□□□□□ -0.52
USP40-201ENST00000251722 BABAM2Q9NXR7 383 aa11.77□□□□□ -0.52
USP40-201ENST00000251722 TP53TG5Q9Y2B4 290 aa11.77□□□□□ -0.52
USP40-201ENST00000251722 ZNF281Q9Y2X9 895 aa11.77□□□□□ -0.52
USP40-201ENST00000251722 THSD7AQ9UPZ6 1657 aa11.77□□□□□ -0.53
USP40-201ENST00000251722 GFYI3L273 518 aa11.77□□□□□ -0.53
USP40-201ENST00000251722 TERTO14746 1132 aaKnown RBP11.77□□□□□ -0.53
USP40-201ENST00000251722 SOX3P41225 446 aa11.77□□□□□ -0.53
USP40-201ENST00000251722 ECI1P42126 302 aa11.77□□□□□ -0.53
USP40-201ENST00000251722 RBP2P50120 134 aa11.77□□□□□ -0.53
USP40-201ENST00000251722 CDK5R2Q13319 367 aa11.77□□□□□ -0.53
USP40-201ENST00000251722 OR56B1Q8NGI3 324 aa11.77□□□□□ -0.53
USP40-201ENST00000251722 RNF141Q8WVD5 230 aa11.77□□□□□ -0.53
USP40-201ENST00000251722 PSMF1Q92530 271 aa11.77□□□□□ -0.53
USP40-201ENST00000251722 PDXPQ96GD0 296 aa11.77□□□□□ -0.53
USP40-201ENST00000251722 MOB1AQ9H8S9 216 aa11.77□□□□□ -0.53
USP40-201ENST00000251722 LYRM2Q9NU23 88 aaPredicted RBP11.77□□□□□ -0.53
USP40-201ENST00000251722 DECR2Q9NUI1 292 aa11.77□□□□□ -0.53
USP40-201ENST00000251722 C19orf53Q9UNZ5 99 aaPredicted RBP11.77□□□□□ -0.53
USP40-201ENST00000251722 V9GY05 133 aa11.77□□□□□ -0.53
USP40-201ENST00000251722 RREB1Q92766 1687 aa11.77□□□□□ -0.53
USP40-201ENST00000251722 TXNDC12O95881 172 aa11.77□□□□□ -0.53
USP40-201ENST00000251722 NPPBP16860 134 aa11.77□□□□□ -0.53
USP40-201ENST00000251722 CR2P20023 1033 aa11.77□□□□□ -0.53
USP40-201ENST00000251722 RAB1AP62820 205 aa11.77□□□□□ -0.53
USP40-201ENST00000251722 ZNF791Q3KP31 576 aaPredicted RBP11.77□□□□□ -0.53
USP40-201ENST00000251722 OR9Q2Q8NGE9 314 aa11.77□□□□□ -0.53
USP40-201ENST00000251722 OR56B4Q8NH76 319 aa11.77□□□□□ -0.53
USP40-201ENST00000251722 CA5BP1Q8WTZ4 195 aa11.77□□□□□ -0.53
USP40-201ENST00000251722 TEX101Q9BY14 249 aa11.77□□□□□ -0.53
USP40-201ENST00000251722 CDCP1Q9H5V8 836 aa11.77□□□□□ -0.53
USP40-201ENST00000251722 MRPL22Q9NWU5 206 aaKnown RBP11.77□□□□□ -0.53
USP40-201ENST00000251722 ATXN7L1Q9ULK2 861 aaPredicted RBP11.77□□□□□ -0.53
USP40-201ENST00000251722 CRHBPP24387 322 aa11.77□□□□□ -0.53
USP40-201ENST00000251722 SRPXP78539 464 aa11.77□□□□□ -0.53
USP40-201ENST00000251722 EMC4Q5J8M3 183 aa11.77□□□□□ -0.53
USP40-201ENST00000251722 CNIH2Q6PI25 160 aa11.77□□□□□ -0.53
USP40-201ENST00000251722 MTURNQ8N3F0 131 aa11.77□□□□□ -0.53
USP40-201ENST00000251722 TMEM130Q8N3G9 435 aa11.77□□□□□ -0.53
USP40-201ENST00000251722 WDR76Q9H967 626 aa11.77□□□□□ -0.53
USP40-201ENST00000251722 PLEKHA3Q9HB20 300 aa11.77□□□□□ -0.53
USP40-201ENST00000251722 CXXC1Q9P0U4 656 aaPredicted RBP11.77□□□□□ -0.53
USP40-201ENST00000251722 USP36Q9P275 1121 aaKnown RBP11.77□□□□□ -0.53
USP40-201ENST00000251722 GOLT1BQ9Y3E0 138 aa11.77□□□□□ -0.53
USP40-201ENST00000251722 TRAV18A0A075B6X5 111 aa11.76□□□□□ -0.53
USP40-201ENST00000251722 ALPLP05186 524 aa11.76□□□□□ -0.53
USP40-201ENST00000251722 PTTG1IPP53801 180 aa11.76□□□□□ -0.53
USP40-201ENST00000251722 PFN3P60673 137 aa11.76□□□□□ -0.53
USP40-201ENST00000251722 ARHGAP11BQ3KRB8 267 aa11.76□□□□□ -0.53
USP40-201ENST00000251722 HMGN2P46Q86SG4 172 aa11.76□□□□□ -0.53
USP40-201ENST00000251722 SLC30A3Q99726 388 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms