RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 KLF9Q13886 244 aaPredicted RBP11.54□□□□□ -0.56
LIG1-221ENST00000613670 GPR18Q14330 331 aa11.54□□□□□ -0.56
LIG1-221ENST00000613670 SLC6A19Q695T7 634 aa11.54□□□□□ -0.56
LIG1-221ENST00000613670 ZCCHC12Q6PEW1 402 aa11.54□□□□□ -0.56
LIG1-221ENST00000613670 SYS1Q8N2H4 156 aa11.54□□□□□ -0.56
LIG1-221ENST00000613670 ZNF615Q8N8J6 731 aa11.54□□□□□ -0.56
LIG1-221ENST00000613670 PAQR8Q8TEZ7 354 aa11.54□□□□□ -0.56
LIG1-221ENST00000613670 FAM3CQ92520 227 aa11.54□□□□□ -0.56
LIG1-221ENST00000613670 ADOQ96SZ5 270 aa11.54□□□□□ -0.56
LIG1-221ENST00000613670 MCCC2Q9HCC0 563 aa11.54□□□□□ -0.56
LIG1-221ENST00000613670 CGGBP1Q9UFW8 167 aaPredicted RBP11.54□□□□□ -0.56
LIG1-221ENST00000613670 ZMIZ1Q9ULJ6 1067 aa11.54□□□□□ -0.56
LIG1-221ENST00000613670 OR6C68A6NDL8 312 aa11.53□□□□□ -0.56
LIG1-221ENST00000613670 MCRIP1C9JLW8 97 aa11.53□□□□□ -0.56
LIG1-221ENST00000613670 APBB3O95704 486 aa11.53□□□□□ -0.56
LIG1-221ENST00000613670 LPLP06858 475 aa11.53□□□□□ -0.56
LIG1-221ENST00000613670 TMIGD3P0DMS9 266 aaPredicted RBP11.53□□□□□ -0.56
LIG1-221ENST00000613670 KIR2DS3Q14952 304 aa11.53□□□□□ -0.56
LIG1-221ENST00000613670 SMAD2Q15796 467 aaKnown RBP11.53□□□□□ -0.56
LIG1-221ENST00000613670 MRM1Q6IN84 353 aaKnown RBP11.53□□□□□ -0.56
LIG1-221ENST00000613670 TMEM88Q6PEY1 159 aa11.53□□□□□ -0.56
LIG1-221ENST00000613670 KLHL24Q6TFL4 600 aa11.53□□□□□ -0.56
LIG1-221ENST00000613670 RASGRP3Q8IV61 690 aa11.53□□□□□ -0.56
LIG1-221ENST00000613670 PXT1Q8NFP0 134 aa11.53□□□□□ -0.56
LIG1-221ENST00000613670 TMEM41AQ96HV5 264 aa11.53□□□□□ -0.56
LIG1-221ENST00000613670 ZNF681Q96N22 645 aa11.53□□□□□ -0.56
LIG1-221ENST00000613670 SOSTQ9BQB4 213 aa11.53□□□□□ -0.56
LIG1-221ENST00000613670 KCNK15Q9H427 330 aa11.53□□□□□ -0.56
LIG1-221ENST00000613670 HEATR5BQ9P2D3 2071 aa11.53□□□□□ -0.56
LIG1-221ENST00000613670 SLC16A7O60669 478 aa11.53□□□□□ -0.56
LIG1-221ENST00000613670 CTSVO60911 334 aa11.53□□□□□ -0.56
LIG1-221ENST00000613670 CTNSO60931 367 aa11.53□□□□□ -0.56
LIG1-221ENST00000613670 GPM6BQ13491 265 aa11.53□□□□□ -0.56
LIG1-221ENST00000613670 ADGRG3Q86Y34 549 aa11.53□□□□□ -0.56
LIG1-221ENST00000613670 FRMD1Q8N878 549 aa11.53□□□□□ -0.56
LIG1-221ENST00000613670 ZBTB8AQ96BR9 441 aa11.53□□□□□ -0.56
LIG1-221ENST00000613670 SLC25A44Q96H78 314 aaPredicted RBP11.53□□□□□ -0.56
LIG1-221ENST00000613670 PRSS27Q9BQR3 290 aa11.53□□□□□ -0.56
LIG1-221ENST00000613670 SLC6A5Q9Y345 797 aa11.53□□□□□ -0.56
LIG1-221ENST00000613670 SPINT1O43278 529 aa11.53□□□□□ -0.56
LIG1-221ENST00000613670 FADS1O60427 444 aa11.53□□□□□ -0.56
LIG1-221ENST00000613670 MOSPD3O75425 235 aa11.53□□□□□ -0.56
LIG1-221ENST00000613670 GLCEO94923 617 aa11.53□□□□□ -0.56
LIG1-221ENST00000613670 EEF1A1P68104 462 aaKnown RBP11.53□□□□□ -0.56
LIG1-221ENST00000613670 MELKQ14680 651 aa11.53□□□□□ -0.56
LIG1-221ENST00000613670 MEP1BQ16820 701 aa11.53□□□□□ -0.56
LIG1-221ENST00000613670 DPY19L2P2Q6ZN68 376 aa11.53□□□□□ -0.56
LIG1-221ENST00000613670 USP53Q70EK8 1073 aa11.53□□□□□ -0.56
LIG1-221ENST00000613670 OR11G2Q8NGC1 345 aa11.53□□□□□ -0.56
LIG1-221ENST00000613670 SEC61A2Q9H9S3 476 aa11.53□□□□□ -0.56
LIG1-221ENST00000613670 GIMAP1-GIMAP5A0A087WTJ2 511 aa11.52□□□□□ -0.56
LIG1-221ENST00000613670 D6RAR5 112 aa11.52□□□□□ -0.56
LIG1-221ENST00000613670 ZIC2O95409 532 aaPredicted RBP11.52□□□□□ -0.56
LIG1-221ENST00000613670 KLF8O95600 359 aaPredicted RBP11.52□□□□□ -0.56
LIG1-221ENST00000613670 GPANK1O95872 356 aa11.52□□□□□ -0.56
LIG1-221ENST00000613670 TGM6O95932 706 aa11.52□□□□□ -0.56
LIG1-221ENST00000613670 GIMD1P0DJR0 217 aa11.52□□□□□ -0.56
LIG1-221ENST00000613670 CXCL2P19875 107 aa11.52□□□□□ -0.56
LIG1-221ENST00000613670 TSFMP43897 325 aaKnown RBP11.52□□□□□ -0.56
LIG1-221ENST00000613670 SCRN3Q0VDG4 424 aa11.52□□□□□ -0.56
LIG1-221ENST00000613670 RIN1Q13671 783 aa11.52□□□□□ -0.56
LIG1-221ENST00000613670 EIF2B1Q14232 305 aaKnown RBP11.52□□□□□ -0.56
LIG1-221ENST00000613670 ZIC1Q15915 447 aa11.52□□□□□ -0.56
LIG1-221ENST00000613670 KCTD18Q6PI47 426 aaPredicted RBP11.52□□□□□ -0.56
LIG1-221ENST00000613670 RHOUQ7L0Q8 258 aa11.52□□□□□ -0.56
LIG1-221ENST00000613670 TMPRSS9Q7Z410 1059 aa11.52□□□□□ -0.56
LIG1-221ENST00000613670 OR2L13Q8N349 312 aa11.52□□□□□ -0.56
LIG1-221ENST00000613670 OR13C3Q8NGS6 347 aa11.52□□□□□ -0.56
LIG1-221ENST00000613670 FAM3DQ96BQ1 224 aa11.52□□□□□ -0.56
LIG1-221ENST00000613670 GIMAP5Q96F15 307 aa11.52□□□□□ -0.56
LIG1-221ENST00000613670 COX14Q96I36 57 aa11.52□□□□□ -0.56
LIG1-221ENST00000613670 S100A13Q99584 98 aa11.52□□□□□ -0.56
LIG1-221ENST00000613670 POFUT1Q9H488 388 aa11.52□□□□□ -0.56
LIG1-221ENST00000613670 SLCO1C1Q9NYB5 712 aa11.52□□□□□ -0.56
LIG1-221ENST00000613670 EMC3Q9P0I2 261 aa11.52□□□□□ -0.56
LIG1-221ENST00000613670 GLS2Q9UI32 602 aa11.52□□□□□ -0.56
LIG1-221ENST00000613670 SLC22A7Q9Y694 548 aa11.52□□□□□ -0.56
LIG1-221ENST00000613670 GPR89AB7ZAQ6 455 aa11.52□□□□□ -0.57
LIG1-221ENST00000613670 CT62P0C5K7 136 aa11.52□□□□□ -0.57
LIG1-221ENST00000613670 GPR89BP0CG08 455 aa11.52□□□□□ -0.57
LIG1-221ENST00000613670 PGAM2P15259 253 aa11.52□□□□□ -0.57
LIG1-221ENST00000613670 THBS2P35442 1172 aa11.52□□□□□ -0.57
LIG1-221ENST00000613670 OR3A2P47893 321 aa11.52□□□□□ -0.57
LIG1-221ENST00000613670 IL13RA1P78552 427 aa11.52□□□□□ -0.57
LIG1-221ENST00000613670 HTRA3P83110 453 aa11.52□□□□□ -0.57
LIG1-221ENST00000613670 VASNQ6EMK4 673 aa11.52□□□□□ -0.57
LIG1-221ENST00000613670 FBXO42Q6P3S6 717 aa11.52□□□□□ -0.57
LIG1-221ENST00000613670 RSPRY1Q96DX4 576 aa11.52□□□□□ -0.57
LIG1-221ENST00000613670 VRK1Q99986 396 aaPredicted RBP11.52□□□□□ -0.57
LIG1-221ENST00000613670 CES1P1Q9UKY3 287 aa11.52□□□□□ -0.57
LIG1-221ENST00000613670 BTCP35070 178 aa11.52□□□□□ -0.57
LIG1-221ENST00000613670 IGFALSP35858 605 aa11.52□□□□□ -0.57
LIG1-221ENST00000613670 GUCA1AP43080 201 aaPredicted RBP11.52□□□□□ -0.57
LIG1-221ENST00000613670 RIDAP52758 137 aaKnown RBP11.52□□□□□ -0.57
LIG1-221ENST00000613670 SWI5Q1ZZU3 235 aa11.52□□□□□ -0.57
LIG1-221ENST00000613670 GLYATL3Q5SZD4 288 aa11.52□□□□□ -0.57
LIG1-221ENST00000613670 AGBL4Q5VU57 503 aa11.52□□□□□ -0.57
LIG1-221ENST00000613670 FAM180AQ6UWF9 173 aa11.52□□□□□ -0.57
LIG1-221ENST00000613670 MUC20Q8N307 709 aaPredicted RBP11.52□□□□□ -0.57
LIG1-221ENST00000613670 PGLYRP3Q96LB9 341 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms