RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 ACSF3Q4G176 576 aaPredicted RBP14.36□□□□□ -0.11
SS18-211ENST00000578954 AADACL4Q5VUY2 407 aa14.36□□□□□ -0.11
SS18-211ENST00000578954 MEDAGQ5VYS4 303 aa14.36□□□□□ -0.11
SS18-211ENST00000578954 UGT2A3Q6UWM9 527 aa14.36□□□□□ -0.11
SS18-211ENST00000578954 OR52E2Q8NGJ4 325 aa14.36□□□□□ -0.11
SS18-211ENST00000578954 OR4K13Q8NH42 304 aa14.36□□□□□ -0.11
SS18-211ENST00000578954 OR6X1Q8NH79 312 aa14.36□□□□□ -0.11
SS18-211ENST00000578954 CNIH3Q8TBE1 160 aa14.36□□□□□ -0.11
SS18-211ENST00000578954 FAM57AQ8TBR7 257 aa14.36□□□□□ -0.11
SS18-211ENST00000578954 ABHD3Q8WU67 409 aa14.36□□□□□ -0.11
SS18-211ENST00000578954 ZNF566Q969W8 418 aa14.36□□□□□ -0.11
SS18-211ENST00000578954 TMEM45BQ96B21 275 aa14.36□□□□□ -0.11
SS18-211ENST00000578954 TXNDC15Q96J42 360 aa14.36□□□□□ -0.11
SS18-211ENST00000578954 IL4I1Q96RQ9 567 aa14.36□□□□□ -0.11
SS18-211ENST00000578954 KCNK17Q96T54 332 aa14.36□□□□□ -0.11
SS18-211ENST00000578954 NMNAT2Q9BZQ4 307 aa14.36□□□□□ -0.11
SS18-211ENST00000578954 CALHM2Q9HA72 323 aa14.36□□□□□ -0.11
SS18-211ENST00000578954 RASSF1Q9NS23 344 aa14.36□□□□□ -0.11
SS18-211ENST00000578954 MED29Q9NX70 200 aa14.36□□□□□ -0.11
SS18-211ENST00000578954 VSX1Q9NZR4 365 aaPredicted RBP14.36□□□□□ -0.11
SS18-211ENST00000578954 KLHL9Q9P2J3 617 aa14.36□□□□□ -0.11
SS18-211ENST00000578954 CACNA1BQ00975 2339 aa14.35□□□□□ -0.11
SS18-211ENST00000578954 PRSS37A4D1T9 235 aa14.35□□□□□ -0.11
SS18-211ENST00000578954 SH3D21A4FU49 640 aa14.35□□□□□ -0.11
SS18-211ENST00000578954 SLC22A20A6NK97 555 aa14.35□□□□□ -0.11
SS18-211ENST00000578954 GPR171O14626 319 aa14.35□□□□□ -0.11
SS18-211ENST00000578954 ATXN7O15265 892 aaPredicted RBP14.35□□□□□ -0.11
SS18-211ENST00000578954 ZNHIT1O43257 154 aa14.35□□□□□ -0.11
SS18-211ENST00000578954 AKAP8O43823 692 aaKnown RBP14.35□□□□□ -0.11
SS18-211ENST00000578954 SERPINI2O75830 405 aa14.35□□□□□ -0.11
SS18-211ENST00000578954 ZNF432O94892 652 aa14.35□□□□□ -0.11
SS18-211ENST00000578954 TGM6O95932 706 aa14.35□□□□□ -0.11
SS18-211ENST00000578954 HOXD4P09016 255 aaPredicted RBP14.35□□□□□ -0.11
SS18-211ENST00000578954 SLC25A1P53007 311 aa14.35□□□□□ -0.11
SS18-211ENST00000578954 C6orf141Q5SZD1 244 aa14.35□□□□□ -0.11
SS18-211ENST00000578954 NXNL2Q5VZ03 156 aa14.35□□□□□ -0.11
SS18-211ENST00000578954 NSUN5P2Q63ZY6 315 aa14.35□□□□□ -0.11
SS18-211ENST00000578954 JAZF1Q86VZ6 243 aa14.35□□□□□ -0.11
SS18-211ENST00000578954 WDFY1Q8IWB7 410 aa14.35□□□□□ -0.11
SS18-211ENST00000578954 SDR9C7Q8NEX9 313 aa14.35□□□□□ -0.11
SS18-211ENST00000578954 OR5M9Q8NGP3 310 aa14.35□□□□□ -0.11
SS18-211ENST00000578954 HDAC2Q92769 488 aaKnown RBP14.35□□□□□ -0.11
SS18-211ENST00000578954 PTP4A1Q93096 173 aa14.35□□□□□ -0.11
SS18-211ENST00000578954 WNT2BQ93097 391 aa14.35□□□□□ -0.11
SS18-211ENST00000578954 SLC25A44Q96H78 314 aaPredicted RBP14.35□□□□□ -0.11
SS18-211ENST00000578954 ZNF385AQ96PM9 386 aaKnown RBP14.35□□□□□ -0.11
SS18-211ENST00000578954 NMNAT3Q96T66 252 aa14.35□□□□□ -0.11
SS18-211ENST00000578954 ALG12Q9BV10 488 aa14.35□□□□□ -0.11
SS18-211ENST00000578954 MRPL13Q9BYD1 178 aaKnown RBP14.35□□□□□ -0.11
SS18-211ENST00000578954 AASSQ9UDR5 926 aa14.35□□□□□ -0.11
SS18-211ENST00000578954 GPR52Q9Y2T5 361 aa14.35□□□□□ -0.11
SS18-211ENST00000578954 SLC35F4A4IF30 521 aa14.34□□□□□ -0.11
SS18-211ENST00000578954 OR6C68A6NDL8 312 aa14.34□□□□□ -0.11
SS18-211ENST00000578954 FIGNL2A6NMB9 653 aa14.34□□□□□ -0.11
SS18-211ENST00000578954 TTLL8A6PVC2 850 aa14.34□□□□□ -0.11
SS18-211ENST00000578954 PRR23D1E9PI22 279 aaPredicted RBP14.34□□□□□ -0.11
SS18-211ENST00000578954 M0R3G1 203 aa14.34□□□□□ -0.11
SS18-211ENST00000578954 XKRYO14609 159 aa14.34□□□□□ -0.11
SS18-211ENST00000578954 TRMUO75648 421 aaKnown RBP14.34□□□□□ -0.11
SS18-211ENST00000578954 PRR23D2P0DMB1 279 aaPredicted RBP14.34□□□□□ -0.11
SS18-211ENST00000578954 PAICSP22234 425 aaKnown RBP14.34□□□□□ -0.11
SS18-211ENST00000578954 SLC2A5P22732 501 aa14.34□□□□□ -0.11
SS18-211ENST00000578954 BIDP55957 195 aa14.34□□□□□ -0.11
SS18-211ENST00000578954 CLDN17P56750 224 aa14.34□□□□□ -0.11
SS18-211ENST00000578954 RUNX1T1Q06455 604 aa14.34□□□□□ -0.11
SS18-211ENST00000578954 GUSBP1Q15486 140 aa14.34□□□□□ -0.11
SS18-211ENST00000578954 EEF1A1P5Q5VTE0 462 aa14.34□□□□□ -0.11
SS18-211ENST00000578954 GTF2IRD2BQ6EKJ0 949 aa14.34□□□□□ -0.11
SS18-211ENST00000578954 LEG1Q6P5S2 330 aa14.34□□□□□ -0.11
SS18-211ENST00000578954 GFRALQ6UXV0 394 aa14.34□□□□□ -0.11
SS18-211ENST00000578954 CXXC5Q7LFL8 322 aaKnown RBP14.34□□□□□ -0.11
SS18-211ENST00000578954 GTF2IRD2Q86UP8 949 aa14.34□□□□□ -0.11
SS18-211ENST00000578954 CPOQ8IVL8 374 aa14.34□□□□□ -0.11
SS18-211ENST00000578954 TMEM123Q8N131 208 aa14.34□□□□□ -0.11
SS18-211ENST00000578954 NMD3Q96D46 503 aaKnown RBP14.34□□□□□ -0.11
SS18-211ENST00000578954 LRR1Q96L50 414 aa14.34□□□□□ -0.11
SS18-211ENST00000578954 Q96MT0 163 aa14.34□□□□□ -0.11
SS18-211ENST00000578954 ZNF582Q96NG8 517 aaPredicted RBP14.34□□□□□ -0.11
SS18-211ENST00000578954 NR1H4Q96RI1 486 aaPredicted RBP14.34□□□□□ -0.11
SS18-211ENST00000578954 YTHDF1Q9BYJ9 559 aaKnown RBP14.34□□□□□ -0.11
SS18-211ENST00000578954 PRRG4Q9BZD6 226 aa14.34□□□□□ -0.11
SS18-211ENST00000578954 GLRX2Q9NS18 164 aa14.34□□□□□ -0.11
SS18-211ENST00000578954 PLCXD1Q9NUJ7 323 aa14.34□□□□□ -0.11
SS18-211ENST00000578954 CLN6Q9NWW5 311 aa14.34□□□□□ -0.11
SS18-211ENST00000578954 EMC3Q9P0I2 261 aa14.34□□□□□ -0.11
SS18-211ENST00000578954 SPENQ96T58 3664 aaKnown RBP14.34□□□□□ -0.11
SS18-211ENST00000578954 SHANK1Q9Y566 2161 aa14.33□□□□□ -0.11
SS18-211ENST00000578954 SLC22A23A1A5C7 686 aa14.33□□□□□ -0.12
SS18-211ENST00000578954 MBD3L4A6NDZ8 208 aaPredicted RBP14.33□□□□□ -0.12
SS18-211ENST00000578954 MBD3L3A6NE82 208 aaPredicted RBP14.33□□□□□ -0.12
SS18-211ENST00000578954 MBD3L5A6NJ08 208 aaPredicted RBP14.33□□□□□ -0.12
SS18-211ENST00000578954 FAM183AA6NL82 134 aa14.33□□□□□ -0.12
SS18-211ENST00000578954 PRODHO43272 600 aa14.33□□□□□ -0.12
SS18-211ENST00000578954 ARHGEF9O43307 516 aa14.33□□□□□ -0.12
SS18-211ENST00000578954 SS18L1O75177 396 aaPredicted RBP14.33□□□□□ -0.12
SS18-211ENST00000578954 ENTPD6O75354 484 aa14.33□□□□□ -0.12
SS18-211ENST00000578954 RENP00797 406 aa14.33□□□□□ -0.12
SS18-211ENST00000578954 IGHG1P01857 330 aa14.33□□□□□ -0.12
SS18-211ENST00000578954 TPOP07202 933 aa14.33□□□□□ -0.12
SS18-211ENST00000578954 CCDC159P0C7I6 412 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms