RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 HAAOP46952 286 aa12.03□□□□□ -0.48
CLN3-210ENST00000563874 VEGFBP49765 207 aa12.03□□□□□ -0.48
CLN3-210ENST00000563874 OR7E24Q6IFN5 339 aa12.03□□□□□ -0.48
CLN3-210ENST00000563874 NPSR1Q6W5P4 371 aa12.03□□□□□ -0.48
CLN3-210ENST00000563874 TMUB2Q71RG4 321 aa12.03□□□□□ -0.48
CLN3-210ENST00000563874 FAM220AQ7Z4H9 259 aa12.03□□□□□ -0.48
CLN3-210ENST00000563874 STPG2Q8N412 459 aa12.03□□□□□ -0.48
CLN3-210ENST00000563874 ST8SIA4Q92187 359 aa12.03□□□□□ -0.48
CLN3-210ENST00000563874 RELTQ969Z4 430 aa12.03□□□□□ -0.48
CLN3-210ENST00000563874 OR2A7Q96R45 310 aa12.03□□□□□ -0.48
CLN3-210ENST00000563874 OPN4Q9UHM6 478 aa12.03□□□□□ -0.48
CLN3-210ENST00000563874 EML5Q05BV3 1969 aa12.03□□□□□ -0.48
CLN3-210ENST00000563874 TICRRQ7Z2Z1 1910 aa12.03□□□□□ -0.48
CLN3-210ENST00000563874 A0A087WUJ7 227 aa12.03□□□□□ -0.48
CLN3-210ENST00000563874 SIGLEC5O15389 551 aa12.03□□□□□ -0.48
CLN3-210ENST00000563874 TNFSF14O43557 240 aa12.03□□□□□ -0.48
CLN3-210ENST00000563874 UPK3AO75631 287 aa12.03□□□□□ -0.48
CLN3-210ENST00000563874 RP2O75695 350 aa12.03□□□□□ -0.48
CLN3-210ENST00000563874 KDM4BO94953 1096 aa12.03□□□□□ -0.48
CLN3-210ENST00000563874 IFNA16P05015 189 aa12.03□□□□□ -0.48
CLN3-210ENST00000563874 S1PR1P21453 382 aa12.03□□□□□ -0.48
CLN3-210ENST00000563874 MAZP56270 477 aaKnown RBP12.03□□□□□ -0.48
CLN3-210ENST00000563874 DHODHQ02127 395 aa12.03□□□□□ -0.48
CLN3-210ENST00000563874 SIGLEC14Q08ET2 396 aa12.03□□□□□ -0.48
CLN3-210ENST00000563874 ZNF684Q5T5D7 378 aa12.03□□□□□ -0.48
CLN3-210ENST00000563874 JAZF1Q86VZ6 243 aa12.03□□□□□ -0.48
CLN3-210ENST00000563874 YAF2Q8IY57 180 aa12.03□□□□□ -0.48
CLN3-210ENST00000563874 FRMD1Q8N878 549 aa12.03□□□□□ -0.48
CLN3-210ENST00000563874 OR51D1Q8NGF3 324 aa12.03□□□□□ -0.48
CLN3-210ENST00000563874 PHYHIPQ92561 330 aa12.03□□□□□ -0.48
CLN3-210ENST00000563874 PMEPA1Q969W9 287 aa12.03□□□□□ -0.48
CLN3-210ENST00000563874 TMEM106AQ96A25 262 aa12.03□□□□□ -0.48
CLN3-210ENST00000563874 MRPL48Q96GC5 212 aaKnown RBP12.03□□□□□ -0.48
CLN3-210ENST00000563874 MOGAT1Q96PD6 335 aa12.03□□□□□ -0.48
CLN3-210ENST00000563874 LMF1Q96S06 567 aa12.03□□□□□ -0.48
CLN3-210ENST00000563874 CCDC3Q9BQI4 270 aa12.03□□□□□ -0.48
CLN3-210ENST00000563874 ST6GALNAC1Q9NSC7 600 aaPredicted RBP12.03□□□□□ -0.48
CLN3-210ENST00000563874 FBXL3Q9UKT7 428 aa12.03□□□□□ -0.48
CLN3-210ENST00000563874 SULT1B1O43704 296 aa12.02□□□□□ -0.48
CLN3-210ENST00000563874 RBBP9O75884 186 aa12.02□□□□□ -0.48
CLN3-210ENST00000563874 CD1AP06126 327 aa12.02□□□□□ -0.48
CLN3-210ENST00000563874 GPR143P51810 404 aa12.02□□□□□ -0.48
CLN3-210ENST00000563874 ALKBH1Q13686 389 aaKnown RBP12.02□□□□□ -0.48
CLN3-210ENST00000563874 ENPP2Q13822 863 aa12.02□□□□□ -0.48
CLN3-210ENST00000563874 ZMYND11Q15326 602 aa12.02□□□□□ -0.48
CLN3-210ENST00000563874 C11orf88Q6PI97 169 aa12.02□□□□□ -0.48
CLN3-210ENST00000563874 ARSKQ6UWY0 536 aa12.02□□□□□ -0.48
CLN3-210ENST00000563874 ZNF550Q7Z398 422 aa12.02□□□□□ -0.48
CLN3-210ENST00000563874 ZSCAN2Q7Z7L9 614 aaPredicted RBP12.02□□□□□ -0.48
CLN3-210ENST00000563874 MUC20Q8N307 709 aaPredicted RBP12.02□□□□□ -0.48
CLN3-210ENST00000563874 SCARF2Q96GP6 870 aaPredicted RBP12.02□□□□□ -0.48
CLN3-210ENST00000563874 FOXN4Q96NZ1 517 aa12.02□□□□□ -0.48
CLN3-210ENST00000563874 CHST6Q9GZX3 395 aa12.02□□□□□ -0.48
CLN3-210ENST00000563874 ZNF337Q9Y3M9 751 aa12.02□□□□□ -0.48
CLN3-210ENST00000563874 OR10H1Q9Y4A9 318 aa12.02□□□□□ -0.48
CLN3-210ENST00000563874 EYSQ5T1H1 3165 aa12.02□□□□□ -0.48
CLN3-210ENST00000563874 UBE2QL1A1L167 161 aa12.02□□□□□ -0.49
CLN3-210ENST00000563874 ATP6V1G2-DDX39BF2Z307 99 aa12.02□□□□□ -0.49
CLN3-210ENST00000563874 TGFBR3LH3BV60 316 aa12.02□□□□□ -0.49
CLN3-210ENST00000563874 CTNSO60931 367 aa12.02□□□□□ -0.49
CLN3-210ENST00000563874 PPM1BO75688 479 aa12.02□□□□□ -0.49
CLN3-210ENST00000563874 GLSO94925 669 aaPredicted RBP12.02□□□□□ -0.49
CLN3-210ENST00000563874 SPDEFO95238 335 aa12.02□□□□□ -0.49
CLN3-210ENST00000563874 HIST1H2ABP04908 130 aa12.02□□□□□ -0.49
CLN3-210ENST00000563874 CALCBP10092 127 aa12.02□□□□□ -0.49
CLN3-210ENST00000563874 HSD17B7P56937 341 aa12.02□□□□□ -0.49
CLN3-210ENST00000563874 TFF2Q03403 129 aa12.02□□□□□ -0.49
CLN3-210ENST00000563874 HIST3H2AQ7L7L0 130 aa12.02□□□□□ -0.49
CLN3-210ENST00000563874 LRRTM1Q86UE6 522 aa12.02□□□□□ -0.49
CLN3-210ENST00000563874 EID2Q8N6I1 236 aa12.02□□□□□ -0.49
CLN3-210ENST00000563874 ZNF676Q8N7Q3 588 aa12.02□□□□□ -0.49
CLN3-210ENST00000563874 OR51S1Q8NGJ8 323 aa12.02□□□□□ -0.49
CLN3-210ENST00000563874 TNFAIP8L1Q8WVP5 186 aa12.02□□□□□ -0.49
CLN3-210ENST00000563874 HIST1H2ACQ93077 130 aa12.02□□□□□ -0.49
CLN3-210ENST00000563874 C3orf49Q96BT1 292 aa12.02□□□□□ -0.49
CLN3-210ENST00000563874 RBM18Q96H35 190 aaKnown RBP12.02□□□□□ -0.49
CLN3-210ENST00000563874 RPP25Q9BUL9 199 aaKnown RBP12.02□□□□□ -0.49
CLN3-210ENST00000563874 HRASLS2Q9NWW9 162 aa12.02□□□□□ -0.49
CLN3-210ENST00000563874 FBXL2Q9UKC9 423 aa12.02□□□□□ -0.49
CLN3-210ENST00000563874 MOKQ9UQ07 419 aa12.02□□□□□ -0.49
CLN3-210ENST00000563874 SLC22A23A1A5C7 686 aa12.02□□□□□ -0.49
CLN3-210ENST00000563874 ARPC3O15145 178 aa12.02□□□□□ -0.49
CLN3-210ENST00000563874 SLC35E2P0CK97 266 aa12.02□□□□□ -0.49
CLN3-210ENST00000563874 GDI1P31150 447 aa12.02□□□□□ -0.49
CLN3-210ENST00000563874 DLX5P56178 289 aa12.02□□□□□ -0.49
CLN3-210ENST00000563874 CTXN1P60606 82 aa12.02□□□□□ -0.49
CLN3-210ENST00000563874 MAT1AQ00266 395 aaKnown RBP12.02□□□□□ -0.49
CLN3-210ENST00000563874 SLC35D3Q5M8T2 416 aa12.02□□□□□ -0.49
CLN3-210ENST00000563874 CFAP77Q6ZQR2 320 aa12.02□□□□□ -0.49
CLN3-210ENST00000563874 DPY19L4Q7Z388 723 aa12.02□□□□□ -0.49
CLN3-210ENST00000563874 OR6N2Q8NGY6 317 aa12.02□□□□□ -0.49
CLN3-210ENST00000563874 LHFPL5Q8TAF8 219 aa12.02□□□□□ -0.49
CLN3-210ENST00000563874 CRISPLD2Q9H0B8 497 aa12.02□□□□□ -0.49
CLN3-210ENST00000563874 WDR76Q9H967 626 aa12.02□□□□□ -0.49
CLN3-210ENST00000563874 POLE3Q9NRF9 147 aa12.02□□□□□ -0.49
CLN3-210ENST00000563874 WBP1LQ9NX94 342 aa12.02□□□□□ -0.49
CLN3-210ENST00000563874 SESN1Q9Y6P5 492 aa12.02□□□□□ -0.49
CLN3-210ENST00000563874 IGKV1D-42A0A075B6H8 117 aa12.01□□□□□ -0.49
CLN3-210ENST00000563874 SNRPGP15A8MWD9 76 aa12.01□□□□□ -0.49
CLN3-210ENST00000563874 IGF2P01344 180 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms