RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 CSNK1EP49674 416 aaKnown RBP3.65□□□□□ -1.83
SCFD1-209ENST00000553280 UGT2B15P54855 530 aa3.65□□□□□ -1.83
SCFD1-209ENST00000553280 APOC4P55056 127 aa3.65□□□□□ -1.83
SCFD1-209ENST00000553280 IRX3P78415 501 aaPredicted RBP3.65□□□□□ -1.83
SCFD1-209ENST00000553280 IGLV3-21P80748 117 aaPredicted RBP3.65□□□□□ -1.83
SCFD1-209ENST00000553280 LIPEQ05469 1076 aa3.65□□□□□ -1.83
SCFD1-209ENST00000553280 HSDL1Q3SXM5 330 aa3.65□□□□□ -1.83
SCFD1-209ENST00000553280 VAX1Q5SQQ9 334 aa3.65□□□□□ -1.83
SCFD1-209ENST00000553280 C9orf129Q5T035 196 aaKnown RBP3.65□□□□□ -1.83
SCFD1-209ENST00000553280 CASC10Q5T4H9 136 aa3.65□□□□□ -1.83
SCFD1-209ENST00000553280 ZNF774Q6NX45 483 aa3.65□□□□□ -1.83
SCFD1-209ENST00000553280 ZNF620Q6ZNG0 422 aa3.65□□□□□ -1.83
SCFD1-209ENST00000553280 TMEM135Q86UB9 458 aa3.65□□□□□ -1.83
SCFD1-209ENST00000553280 MICU2Q8IYU8 434 aa3.65□□□□□ -1.83
SCFD1-209ENST00000553280 PRR22Q8IZ63 422 aa3.65□□□□□ -1.83
SCFD1-209ENST00000553280 PUSL1Q8N0Z8 303 aaKnown RBP3.65□□□□□ -1.83
SCFD1-209ENST00000553280 C8orf44Q96CB5 159 aa3.65□□□□□ -1.83
SCFD1-209ENST00000553280 SLC29A1Q99808 456 aa3.65□□□□□ -1.83
SCFD1-209ENST00000553280 NEUROG2Q9H2A3 272 aa3.65□□□□□ -1.83
SCFD1-209ENST00000553280 MRPS30Q9NP92 439 aaKnown RBP3.65□□□□□ -1.83
SCFD1-209ENST00000553280 THSD7BQ9C0I4 1608 aa3.64□□□□□ -1.83
SCFD1-209ENST00000553280 SMCO2A6NFE2 343 aa3.64□□□□□ -1.83
SCFD1-209ENST00000553280 ZFP92A6NM28 416 aa3.64□□□□□ -1.83
SCFD1-209ENST00000553280 SUPT3HB4E1H0 165 aa3.64□□□□□ -1.83
SCFD1-209ENST00000553280 ERVV-1B6SEH8 477 aa3.64□□□□□ -1.83
SCFD1-209ENST00000553280 MRPS12O15235 138 aaKnown RBP3.64□□□□□ -1.83
SCFD1-209ENST00000553280 AKR7A2O43488 359 aa3.64□□□□□ -1.83
SCFD1-209ENST00000553280 BBOX1O75936 387 aa3.64□□□□□ -1.83
SCFD1-209ENST00000553280 RPS5P46782 204 aaKnown RBP3.64□□□□□ -1.83
SCFD1-209ENST00000553280 CX3CR1P49238 355 aa3.64□□□□□ -1.83
SCFD1-209ENST00000553280 SSR4P51571 173 aa3.64□□□□□ -1.83
SCFD1-209ENST00000553280 CLDN8P56748 225 aa3.64□□□□□ -1.83
SCFD1-209ENST00000553280 DSCR10P59022 87 aa3.64□□□□□ -1.83
SCFD1-209ENST00000553280 TAS2R19P59542 299 aa3.64□□□□□ -1.83
SCFD1-209ENST00000553280 PAX5Q02548 391 aa3.64□□□□□ -1.83
SCFD1-209ENST00000553280 SELENBP1Q13228 472 aa3.64□□□□□ -1.83
SCFD1-209ENST00000553280 HADHQ16836 314 aaKnown RBP3.64□□□□□ -1.83
SCFD1-209ENST00000553280 KLHL40Q2TBA0 621 aa3.64□□□□□ -1.83
SCFD1-209ENST00000553280 CAVIN4Q5BKX8 364 aa3.64□□□□□ -1.83
SCFD1-209ENST00000553280 PIP5KL1Q5T9C9 394 aa3.64□□□□□ -1.83
SCFD1-209ENST00000553280 ANGPTL8Q6UXH0 198 aa3.64□□□□□ -1.83
SCFD1-209ENST00000553280 MMAAQ8IVH4 418 aaKnown RBP3.64□□□□□ -1.83
SCFD1-209ENST00000553280 IQCKQ8N0W5 287 aa3.64□□□□□ -1.83
SCFD1-209ENST00000553280 ZNF740Q8NDX6 193 aa3.64□□□□□ -1.83
SCFD1-209ENST00000553280 VN1R2Q8NFZ6 395 aa3.64□□□□□ -1.83
SCFD1-209ENST00000553280 OR9G1Q8NH87 305 aa3.64□□□□□ -1.83
SCFD1-209ENST00000553280 RHEBL1Q8TAI7 183 aa3.64□□□□□ -1.83
SCFD1-209ENST00000553280 MARCH1Q8TCQ1 289 aa3.64□□□□□ -1.83
SCFD1-209ENST00000553280 GLYATL2Q8WU03 294 aa3.64□□□□□ -1.83
SCFD1-209ENST00000553280 ISG20Q96AZ6 181 aaKnown RBP3.64□□□□□ -1.83
SCFD1-209ENST00000553280 RARRES2Q99969 163 aa3.64□□□□□ -1.83
SCFD1-209ENST00000553280 PYGO2Q9BRQ0 406 aa3.64□□□□□ -1.83
SCFD1-209ENST00000553280 ELOVL6Q9H5J4 265 aa3.64□□□□□ -1.83
SCFD1-209ENST00000553280 SLC25A22Q9H936 323 aa3.64□□□□□ -1.83
SCFD1-209ENST00000553280 SLC7A10Q9NS82 523 aa3.64□□□□□ -1.83
SCFD1-209ENST00000553280 CLCF1Q9UBD9 225 aa3.64□□□□□ -1.83
SCFD1-209ENST00000553280 UXTQ9UBK9 157 aaPredicted RBP3.64□□□□□ -1.83
SCFD1-209ENST00000553280 LSM7Q9UK45 103 aaKnown RBP3.64□□□□□ -1.83
SCFD1-209ENST00000553280 VSIG4Q9Y279 399 aa3.64□□□□□ -1.83
SCFD1-209ENST00000553280 CHTOPQ9Y3Y2 248 aaKnown RBP3.64□□□□□ -1.83
SCFD1-209ENST00000553280 MMP24Q9Y5R2 645 aa3.64□□□□□ -1.83
SCFD1-209ENST00000553280 MSH6P52701 1360 aa3.63□□□□□ -1.83
SCFD1-209ENST00000553280 TRBV9A0A0B4J1U6 114 aa3.63□□□□□ -1.83
SCFD1-209ENST00000553280 KIR2DL5BA0A0G2JN68 375 aa3.63□□□□□ -1.83
SCFD1-209ENST00000553280 KIR2DL5BA0A0G2JPC4 375 aa3.63□□□□□ -1.83
SCFD1-209ENST00000553280 A0A0J9YXY3 114 aa3.63□□□□□ -1.83
SCFD1-209ENST00000553280 C12orf71A8MTZ7 269 aa3.63□□□□□ -1.83
SCFD1-209ENST00000553280 PPP1R2P9O14990 202 aa3.63□□□□□ -1.83
SCFD1-209ENST00000553280 HUS1O60921 280 aa3.63□□□□□ -1.83
SCFD1-209ENST00000553280 EIF3GO75821 320 aaKnown RBP eCLIP3.63□□□□□ -1.83
SCFD1-209ENST00000553280 EIF2S2P20042 333 aaKnown RBP3.63□□□□□ -1.83
SCFD1-209ENST00000553280 FMO3P31513 532 aa3.63□□□□□ -1.83
SCFD1-209ENST00000553280 BTCP35070 178 aa3.63□□□□□ -1.83
SCFD1-209ENST00000553280 SLC1A1P43005 524 aa3.63□□□□□ -1.83
SCFD1-209ENST00000553280 GPR6P46095 362 aaPredicted RBP3.63□□□□□ -1.83
SCFD1-209ENST00000553280 RGRP47804 291 aa3.63□□□□□ -1.83
SCFD1-209ENST00000553280 OR1G1P47890 313 aa3.63□□□□□ -1.83
SCFD1-209ENST00000553280 YWHAGP61981 247 aaKnown RBP eCLIP3.63□□□□□ -1.83
SCFD1-209ENST00000553280 ILKQ13418 452 aa3.63□□□□□ -1.83
SCFD1-209ENST00000553280 ARFRP1Q13795 201 aa3.63□□□□□ -1.83
SCFD1-209ENST00000553280 DOC2AQ14183 400 aa3.63□□□□□ -1.83
SCFD1-209ENST00000553280 TWF2Q6IBS0 349 aaKnown RBP3.63□□□□□ -1.83
SCFD1-209ENST00000553280 RFLNAQ6ZTI6 216 aa3.63□□□□□ -1.83
SCFD1-209ENST00000553280 KIR2DL5AQ8N109 375 aa3.63□□□□□ -1.83
SCFD1-209ENST00000553280 EID2Q8N6I1 236 aa3.63□□□□□ -1.83
SCFD1-209ENST00000553280 KIR2DL5BQ8NHK3 375 aa3.63□□□□□ -1.83
SCFD1-209ENST00000553280 CXorf40AQ8TE69 158 aa3.63□□□□□ -1.83
SCFD1-209ENST00000553280 FRAT1Q92837 279 aaPredicted RBP3.63□□□□□ -1.83
SCFD1-209ENST00000553280 MARC2Q969Z3 335 aa3.63□□□□□ -1.83
SCFD1-209ENST00000553280 C16orf74Q96GX8 76 aa3.63□□□□□ -1.83
SCFD1-209ENST00000553280 B3GALT6Q96L58 329 aa3.63□□□□□ -1.83
SCFD1-209ENST00000553280 FCRL1Q96LA6 429 aa3.63□□□□□ -1.83
SCFD1-209ENST00000553280 BCL7BQ9BQE9 202 aa3.63□□□□□ -1.83
SCFD1-209ENST00000553280 ANKRD60Q9BZ19 345 aa3.63□□□□□ -1.83
SCFD1-209ENST00000553280 FANCEQ9HB96 536 aa3.63□□□□□ -1.83
SCFD1-209ENST00000553280 PLGRKTQ9HBL7 147 aa3.63□□□□□ -1.83
SCFD1-209ENST00000553280 TMEM165Q9HC07 324 aa3.63□□□□□ -1.83
SCFD1-209ENST00000553280 RPS10P5Q9NQ39 176 aa3.63□□□□□ -1.83
SCFD1-209ENST00000553280 TNFRSF19Q9NS68 423 aa3.63□□□□□ -1.83
SCFD1-209ENST00000553280 MRPL22Q9NWU5 206 aaKnown RBP3.63□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms