RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 SSX2Q16385 188 aa3.19□□□□□ -1.9
LIMA1-208ENST00000551691 CHRFAM7AQ494W8 412 aa3.19□□□□□ -1.9
LIMA1-208ENST00000551691 ACSF3Q4G176 576 aaPredicted RBP3.19□□□□□ -1.9
LIMA1-208ENST00000551691 KCNIP4Q6PIL6 250 aa3.19□□□□□ -1.9
LIMA1-208ENST00000551691 SPSB3Q6PJ21 355 aa3.19□□□□□ -1.9
LIMA1-208ENST00000551691 SLC25A47Q6Q0C1 308 aa3.19□□□□□ -1.9
LIMA1-208ENST00000551691 SYT10Q6XYQ8 523 aa3.19□□□□□ -1.9
LIMA1-208ENST00000551691 C9orf47Q6ZRZ4 202 aa3.19□□□□□ -1.9
LIMA1-208ENST00000551691 HOGA1Q86XE5 327 aa3.19□□□□□ -1.9
LIMA1-208ENST00000551691 ZDHHC17Q8IUH5 632 aa3.19□□□□□ -1.9
LIMA1-208ENST00000551691 LACC1Q8IV20 430 aa3.19□□□□□ -1.9
LIMA1-208ENST00000551691 SLC22A15Q8IZD6 547 aa3.19□□□□□ -1.9
LIMA1-208ENST00000551691 DEFB106AQ8N104 65 aa3.19□□□□□ -1.9
LIMA1-208ENST00000551691 ARFGAP2Q8N6H7 521 aa3.19□□□□□ -1.9
LIMA1-208ENST00000551691 OR6F1Q8NGZ6 308 aa3.19□□□□□ -1.9
LIMA1-208ENST00000551691 OR2T11Q8NH01 316 aa3.19□□□□□ -1.9
LIMA1-208ENST00000551691 OR52J3Q8NH60 311 aa3.19□□□□□ -1.9
LIMA1-208ENST00000551691 LINC01560Q8TB33 94 aa3.19□□□□□ -1.9
LIMA1-208ENST00000551691 PHF10Q8WUB8 498 aaKnown RBP3.19□□□□□ -1.9
LIMA1-208ENST00000551691 FCAMRQ8WWV6 532 aa3.19□□□□□ -1.9
LIMA1-208ENST00000551691 PSMF1Q92530 271 aa3.19□□□□□ -1.9
LIMA1-208ENST00000551691 ISG20Q96AZ6 181 aaKnown RBP3.19□□□□□ -1.9
LIMA1-208ENST00000551691 PSKH2Q96QS6 385 aa3.19□□□□□ -1.9
LIMA1-208ENST00000551691 NRTNQ99748 197 aa3.19□□□□□ -1.9
LIMA1-208ENST00000551691 PINK1Q9BXM7 581 aa3.19□□□□□ -1.9
LIMA1-208ENST00000551691 YY1AP1Q9H869 796 aa3.19□□□□□ -1.9
LIMA1-208ENST00000551691 MTHFD2LQ9H903 347 aaPredicted RBP3.19□□□□□ -1.9
LIMA1-208ENST00000551691 MEAF6Q9HAF1 191 aa3.19□□□□□ -1.9
LIMA1-208ENST00000551691 ELL3Q9HB65 397 aaPredicted RBP3.19□□□□□ -1.9
LIMA1-208ENST00000551691 POPDC2Q9HBU9 364 aa3.19□□□□□ -1.9
LIMA1-208ENST00000551691 DDIT4Q9NX09 232 aa3.19□□□□□ -1.9
LIMA1-208ENST00000551691 SLC23A2Q9UGH3 650 aa3.19□□□□□ -1.9
LIMA1-208ENST00000551691 RPH3ALQ9UNE2 315 aa3.19□□□□□ -1.9
LIMA1-208ENST00000551691 B9D1Q9UPM9 204 aa3.19□□□□□ -1.9
LIMA1-208ENST00000551691 TMED5Q9Y3A6 229 aa3.19□□□□□ -1.9
LIMA1-208ENST00000551691 MAB21L2Q9Y586 359 aa3.19□□□□□ -1.9
LIMA1-208ENST00000551691 ANKRD12Q6UB98 2062 aa3.19□□□□□ -1.9
LIMA1-208ENST00000551691 NUP210LQ5VU65 1888 aa3.18□□□□□ -1.9
LIMA1-208ENST00000551691 IGKV2D-30A0A075B6S6 120 aa3.18□□□□□ -1.9
LIMA1-208ENST00000551691 TRAV17A0A0B4J275 112 aa3.18□□□□□ -1.9
LIMA1-208ENST00000551691 LRRC30A6NM36 301 aa3.18□□□□□ -1.9
LIMA1-208ENST00000551691 SMIM1B2RUZ4 78 aa3.18□□□□□ -1.9
LIMA1-208ENST00000551691 E9PBE3 544 aa3.18□□□□□ -1.9
LIMA1-208ENST00000551691 SDHDO14521 159 aa3.18□□□□□ -1.9
LIMA1-208ENST00000551691 TSPAN2O60636 221 aa3.18□□□□□ -1.9
LIMA1-208ENST00000551691 ANGPTL1O95841 491 aa3.18□□□□□ -1.9
LIMA1-208ENST00000551691 SOD1P00441 154 aa3.18□□□□□ -1.9
LIMA1-208ENST00000551691 JCHAINP01591 159 aa3.18□□□□□ -1.9
LIMA1-208ENST00000551691 IGHEP01854 428 aa3.18□□□□□ -1.9
LIMA1-208ENST00000551691 F7P08709 466 aaPredicted RBP3.18□□□□□ -1.9
LIMA1-208ENST00000551691 ADORA3P0DMS8 318 aa3.18□□□□□ -1.9
LIMA1-208ENST00000551691 ANXA3P12429 323 aa3.18□□□□□ -1.9
LIMA1-208ENST00000551691 CHRNB4P30926 498 aa3.18□□□□□ -1.9
LIMA1-208ENST00000551691 CCR1P32246 355 aa3.18□□□□□ -1.9
LIMA1-208ENST00000551691 MTIF2P46199 727 aaKnown RBP3.18□□□□□ -1.9
LIMA1-208ENST00000551691 RGRP47804 291 aa3.18□□□□□ -1.9
LIMA1-208ENST00000551691 RPL27P61353 136 aaKnown RBP3.18□□□□□ -1.9
LIMA1-208ENST00000551691 UBE2HP62256 183 aa3.18□□□□□ -1.9
LIMA1-208ENST00000551691 PHEXP78562 749 aa3.18□□□□□ -1.9
LIMA1-208ENST00000551691 DMTNQ08495 405 aa3.18□□□□□ -1.9
LIMA1-208ENST00000551691 PHYHD1Q5SRE7 291 aa3.18□□□□□ -1.9
LIMA1-208ENST00000551691 SLX4IPQ5VYV7 408 aa3.18□□□□□ -1.9
LIMA1-208ENST00000551691 SLC35E4Q6ICL7 350 aa3.18□□□□□ -1.9
LIMA1-208ENST00000551691 ARHGAP11AQ6P4F7 1023 aa3.18□□□□□ -1.9
LIMA1-208ENST00000551691 LCLAT1Q6UWP7 414 aa3.18□□□□□ -1.9
LIMA1-208ENST00000551691 ZYG11AQ6WRX3 759 aa3.18□□□□□ -1.9
LIMA1-208ENST00000551691 C12orf54Q6X4T0 127 aa3.18□□□□□ -1.9
LIMA1-208ENST00000551691 ZNF841Q6ZN19 808 aa3.18□□□□□ -1.9
LIMA1-208ENST00000551691 C9orf139Q6ZV77 190 aa3.18□□□□□ -1.9
LIMA1-208ENST00000551691 LHFPL4Q7Z7J7 247 aa3.18□□□□□ -1.9
LIMA1-208ENST00000551691 KIAA1328Q86T90 577 aa3.18□□□□□ -1.9
LIMA1-208ENST00000551691 SETD3Q86TU7 594 aaPredicted RBP3.18□□□□□ -1.9
LIMA1-208ENST00000551691 TMEM17Q86X19 198 aa3.18□□□□□ -1.9
LIMA1-208ENST00000551691 BBS5Q8N3I7 341 aa3.18□□□□□ -1.9
LIMA1-208ENST00000551691 ARIH2OSQ8N7S6 290 aa3.18□□□□□ -1.9
LIMA1-208ENST00000551691 SYT14Q8NB59 555 aa3.18□□□□□ -1.9
LIMA1-208ENST00000551691 OR5AU1Q8NGC0 362 aa3.18□□□□□ -1.9
LIMA1-208ENST00000551691 OR5AP2Q8NGF4 316 aa3.18□□□□□ -1.9
LIMA1-208ENST00000551691 OR10V1Q8NGI7 309 aa3.18□□□□□ -1.9
LIMA1-208ENST00000551691 OR2Y1Q8NGV0 311 aa3.18□□□□□ -1.9
LIMA1-208ENST00000551691 GATAD1Q8WUU5 269 aa3.18□□□□□ -1.9
LIMA1-208ENST00000551691 SPRYD4Q8WW59 207 aaPredicted RBP3.18□□□□□ -1.9
LIMA1-208ENST00000551691 UPRTQ96BW1 309 aa3.18□□□□□ -1.9
LIMA1-208ENST00000551691 C8orf44Q96CB5 159 aa3.18□□□□□ -1.9
LIMA1-208ENST00000551691 NUS1Q96E22 293 aa3.18□□□□□ -1.9
LIMA1-208ENST00000551691 ZNF486Q96H40 463 aaPredicted RBP3.18□□□□□ -1.9
LIMA1-208ENST00000551691 LRR1Q96L50 414 aa3.18□□□□□ -1.9
LIMA1-208ENST00000551691 NPAS2Q99743 824 aa3.18□□□□□ -1.9
LIMA1-208ENST00000551691 TRIM51Q9BSJ1 452 aa3.18□□□□□ -1.9
LIMA1-208ENST00000551691 NCOR1P1Q9H4R4 102 aa3.18□□□□□ -1.9
LIMA1-208ENST00000551691 ELOVL3Q9HB03 270 aa3.18□□□□□ -1.9
LIMA1-208ENST00000551691 ZNF160Q9HCG1 818 aa3.18□□□□□ -1.9
LIMA1-208ENST00000551691 B3GAT2Q9NPZ5 323 aa3.18□□□□□ -1.9
LIMA1-208ENST00000551691 GPATCH2LQ9NWQ4 482 aa3.18□□□□□ -1.9
LIMA1-208ENST00000551691 ARMCX1Q9P291 453 aa3.18□□□□□ -1.9
LIMA1-208ENST00000551691 DHCR7Q9UBM7 475 aaKnown RBP3.18□□□□□ -1.9
LIMA1-208ENST00000551691 SEC14L4Q9UDX3 406 aa3.18□□□□□ -1.9
LIMA1-208ENST00000551691 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP3.18□□□□□ -1.9
LIMA1-208ENST00000551691 PPP1R3CQ9UQK1 317 aa3.18□□□□□ -1.9
LIMA1-208ENST00000551691 IGHV4-4A0A075B6R2 117 aa3.17□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms