RNA–Protein interactions for RNA: ENST00000535236.5

SFSWAP-203, Transcript of splicing factor SWAP, humanhuman

TSL 1 (best)

Gene SFSWAP, Length 5,593 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-203ENST00000535236 POU4F3Q15319 338 aa16.77■□□□□ 0.27
SFSWAP-203ENST00000535236 C1orf140Q5VVS0 124 aa16.77■□□□□ 0.27
SFSWAP-203ENST00000535236 LYPD4Q6UWN0 246 aa16.77■□□□□ 0.27
SFSWAP-203ENST00000535236 RPL35P42766 123 aaKnown RBP16.76■□□□□ 0.27
SFSWAP-203ENST00000535236 NPBWR1P48145 328 aa16.76■□□□□ 0.27
SFSWAP-203ENST00000535236 GRB2P62993 217 aaKnown RBP16.76■□□□□ 0.27
SFSWAP-203ENST00000535236 ZNF74Q16587 644 aa16.76■□□□□ 0.27
SFSWAP-203ENST00000535236 GJC3Q8NFK1 279 aa16.76■□□□□ 0.27
SFSWAP-203ENST00000535236 BARHL1Q9BZE3 327 aa16.76■□□□□ 0.27
SFSWAP-203ENST00000535236 SSUH2Q9Y2M2 353 aa16.76■□□□□ 0.27
SFSWAP-203ENST00000535236 CLDN24A6NM45 220 aa16.76■□□□□ 0.27
SFSWAP-203ENST00000535236 KLKB1P03952 638 aa16.76■□□□□ 0.27
SFSWAP-203ENST00000535236 HNF4GQ14541 408 aa16.76■□□□□ 0.27
SFSWAP-203ENST00000535236 FXNQ16595 210 aa16.76■□□□□ 0.27
SFSWAP-203ENST00000535236 CST9Q5W186 159 aa16.76■□□□□ 0.27
SFSWAP-203ENST00000535236 PIGTQ969N2 578 aa16.76■□□□□ 0.27
SFSWAP-203ENST00000535236 ITPKCQ96DU7 683 aa16.76■□□□□ 0.27
SFSWAP-203ENST00000535236 BTBD17A6NE02 478 aa16.76■□□□□ 0.27
SFSWAP-203ENST00000535236 C4orf47A7E2U8 309 aa16.76■□□□□ 0.27
SFSWAP-203ENST00000535236 TNFRSF10CO14798 259 aa16.76■□□□□ 0.27
SFSWAP-203ENST00000535236 TGM6O95932 706 aa16.76■□□□□ 0.27
SFSWAP-203ENST00000535236 LIM2P55344 173 aa16.76■□□□□ 0.27
SFSWAP-203ENST00000535236 CRMP1Q14194 572 aa16.76■□□□□ 0.27
SFSWAP-203ENST00000535236 ZNF750Q32MQ0 723 aa16.76■□□□□ 0.27
SFSWAP-203ENST00000535236 OR6V1Q8N148 313 aa16.76■□□□□ 0.27
SFSWAP-203ENST00000535236 LGALS14Q8TCE9 139 aa16.76■□□□□ 0.27
SFSWAP-203ENST00000535236 INTS12Q96CB8 462 aaKnown RBP16.76■□□□□ 0.27
SFSWAP-203ENST00000535236 IGHV3-20A0A0C4DH32 117 aa16.76■□□□□ 0.27
SFSWAP-203ENST00000535236 ANXA7P20073 488 aaKnown RBP16.76■□□□□ 0.27
SFSWAP-203ENST00000535236 GABRB3P28472 473 aa16.76■□□□□ 0.27
SFSWAP-203ENST00000535236 CD1CP29017 333 aa16.76■□□□□ 0.27
SFSWAP-203ENST00000535236 TRHRP34981 398 aaPredicted RBP16.76■□□□□ 0.27
SFSWAP-203ENST00000535236 ZNF93P35789 620 aaPredicted RBP16.76■□□□□ 0.27
SFSWAP-203ENST00000535236 DAPP51397 102 aa16.76■□□□□ 0.27
SFSWAP-203ENST00000535236 TRNP1Q6NT89 227 aa16.76■□□□□ 0.27
SFSWAP-203ENST00000535236 MFSD12Q6NUT3 480 aa16.76■□□□□ 0.27
SFSWAP-203ENST00000535236 ZNF836Q6ZNA1 936 aa16.76■□□□□ 0.27
SFSWAP-203ENST00000535236 NAA40Q86UY6 237 aa16.76■□□□□ 0.27
SFSWAP-203ENST00000535236 FGGYQ96C11 551 aa16.76■□□□□ 0.27
SFSWAP-203ENST00000535236 GALNT9Q9HCQ5 603 aa16.76■□□□□ 0.27
SFSWAP-203ENST00000535236 PCDHGA5Q9Y5G8 931 aa16.76■□□□□ 0.27
SFSWAP-203ENST00000535236 SLCO2B1O94956 709 aa16.75■□□□□ 0.27
SFSWAP-203ENST00000535236 SNAPINO95295 136 aa16.75■□□□□ 0.27
SFSWAP-203ENST00000535236 ALKBH1Q13686 389 aaKnown RBP16.75■□□□□ 0.27
SFSWAP-203ENST00000535236 KHDC1LQ5JSQ8 128 aa16.75■□□□□ 0.27
SFSWAP-203ENST00000535236 HENMT1Q5T8I9 393 aaKnown RBP16.75■□□□□ 0.27
SFSWAP-203ENST00000535236 GNB4Q9HAV0 340 aa16.75■□□□□ 0.27
SFSWAP-203ENST00000535236 PIGLQ9Y2B2 252 aa16.75■□□□□ 0.27
SFSWAP-203ENST00000535236 PRRG2O14669 202 aa16.75■□□□□ 0.27
SFSWAP-203ENST00000535236 PRPH2P23942 346 aa16.75■□□□□ 0.27
SFSWAP-203ENST00000535236 SERPINF1P36955 418 aa16.75■□□□□ 0.27
SFSWAP-203ENST00000535236 RAP2BP61225 183 aa16.75■□□□□ 0.27
SFSWAP-203ENST00000535236 SSTP61278 116 aa16.75■□□□□ 0.27
SFSWAP-203ENST00000535236 RPS23P62266 143 aaKnown RBP16.75■□□□□ 0.27
SFSWAP-203ENST00000535236 SLC25A43Q8WUT9 341 aaPredicted RBP16.75■□□□□ 0.27
SFSWAP-203ENST00000535236 EMG1Q92979 244 aaKnown RBP16.75■□□□□ 0.27
SFSWAP-203ENST00000535236 PHF7Q9BWX1 381 aaPredicted RBP16.75■□□□□ 0.27
SFSWAP-203ENST00000535236 LANCL2Q9NS86 450 aa16.75■□□□□ 0.27
SFSWAP-203ENST00000535236 CD14P08571 375 aa16.75■□□□□ 0.27
SFSWAP-203ENST00000535236 MEP1BQ16820 701 aa16.75■□□□□ 0.27
SFSWAP-203ENST00000535236 PLK5Q496M5 336 aa16.75■□□□□ 0.27
SFSWAP-203ENST00000535236 KCTD11Q693B1 232 aa16.75■□□□□ 0.27
SFSWAP-203ENST00000535236 RBMS3Q6XE24 437 aaKnown RBP16.75■□□□□ 0.27
SFSWAP-203ENST00000535236 H1FNTQ75WM6 255 aaPredicted RBP16.75■□□□□ 0.27
SFSWAP-203ENST00000535236 CPEB3Q8NE35 698 aaKnown RBP16.75■□□□□ 0.27
SFSWAP-203ENST00000535236 NANPQ8TBE9 248 aa16.75■□□□□ 0.27
SFSWAP-203ENST00000535236 SLC37A2Q8TED4 501 aa16.75■□□□□ 0.27
SFSWAP-203ENST00000535236 SULT1B1O43704 296 aa16.75■□□□□ 0.27
SFSWAP-203ENST00000535236 MT-ATP6P00846 226 aa16.75■□□□□ 0.27
SFSWAP-203ENST00000535236 SSTR2P30874 369 aa16.75■□□□□ 0.27
SFSWAP-203ENST00000535236 SLC46A3Q7Z3Q1 461 aa16.75■□□□□ 0.27
SFSWAP-203ENST00000535236 LACC1Q8IV20 430 aa16.75■□□□□ 0.27
SFSWAP-203ENST00000535236 TDHQ8IZJ6 230 aa16.75■□□□□ 0.27
SFSWAP-203ENST00000535236 SLC35G3Q8N808 338 aa16.75■□□□□ 0.27
SFSWAP-203ENST00000535236 ABHD4Q8TB40 342 aa16.75■□□□□ 0.27
SFSWAP-203ENST00000535236 SAT2Q96F10 170 aaPredicted RBP16.75■□□□□ 0.27
SFSWAP-203ENST00000535236 C6orf106Q9H6K1 298 aaPredicted RBP16.75■□□□□ 0.27
SFSWAP-203ENST00000535236 LYRM4Q9HD34 91 aa16.75■□□□□ 0.27
SFSWAP-203ENST00000535236 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP16.75■□□□□ 0.27
SFSWAP-203ENST00000535236 OR52A1Q9UKL2 312 aa16.75■□□□□ 0.27
SFSWAP-203ENST00000535236 LRIT2A6NDA9 550 aa16.75■□□□□ 0.27
SFSWAP-203ENST00000535236 CNIH1O95406 144 aa16.75■□□□□ 0.27
SFSWAP-203ENST00000535236 ALPLP05186 524 aa16.75■□□□□ 0.27
SFSWAP-203ENST00000535236 TGM4P49221 684 aa16.75■□□□□ 0.27
SFSWAP-203ENST00000535236 RPL11P62913 178 aaKnown RBP16.75■□□□□ 0.27
SFSWAP-203ENST00000535236 NRG4Q8WWG1 115 aa16.75■□□□□ 0.27
SFSWAP-203ENST00000535236 OSGIN1Q9UJX0 560 aa16.75■□□□□ 0.27
SFSWAP-203ENST00000535236 TMEM265A0A087WTH1 108 aa16.74■□□□□ 0.27
SFSWAP-203ENST00000535236 SHISA7A6NL88 538 aa16.74■□□□□ 0.27
SFSWAP-203ENST00000535236 AGAP14A8MT82 685 aa16.74■□□□□ 0.27
SFSWAP-203ENST00000535236 EIF4E2O60573 245 aaKnown RBP16.74■□□□□ 0.27
SFSWAP-203ENST00000535236 EIF2DP41214 584 aaKnown RBP16.74■□□□□ 0.27
SFSWAP-203ENST00000535236 NKAIN1Q4KMZ8 207 aa16.74■□□□□ 0.27
SFSWAP-203ENST00000535236 C11orf40Q8WZ69 217 aa16.74■□□□□ 0.27
SFSWAP-203ENST00000535236 NRSN2Q9GZP1 204 aa16.74■□□□□ 0.27
SFSWAP-203ENST00000535236 A0A0D9SG52 128 aa16.74■□□□□ 0.27
SFSWAP-203ENST00000535236 SLC2A1P11166 492 aa16.74■□□□□ 0.27
SFSWAP-203ENST00000535236 ELAVL4P26378 380 aaKnown RBP16.74■□□□□ 0.27
SFSWAP-203ENST00000535236 P2RX1P51575 399 aa16.74■□□□□ 0.27
SFSWAP-203ENST00000535236 RFPL4BQ6ZWI9 263 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms