RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 NNATQ16517 81 aa8.83□□□□□ -1
VCAN-210ENST00000513960 POMZP3Q6PJE2 187 aa8.83□□□□□ -1
VCAN-210ENST00000513960 ZNF227Q86WZ6 799 aa8.83□□□□□ -1
VCAN-210ENST00000513960 SAMD14Q8IZD0 417 aaPredicted RBP8.83□□□□□ -1
VCAN-210ENST00000513960 PUSL1Q8N0Z8 303 aaKnown RBP8.83□□□□□ -1
VCAN-210ENST00000513960 SPICQ8N5J4 248 aa8.83□□□□□ -1
VCAN-210ENST00000513960 OR10R2Q8NGX6 335 aa8.83□□□□□ -1
VCAN-210ENST00000513960 STK35Q8TDR2 534 aa8.83□□□□□ -1
VCAN-210ENST00000513960 GAL3ST3Q96A11 431 aa8.83□□□□□ -1
VCAN-210ENST00000513960 SLC22A18Q96BI1 424 aa8.83□□□□□ -1
VCAN-210ENST00000513960 SMIM19Q96E16 107 aa8.83□□□□□ -1
VCAN-210ENST00000513960 AHCYL2Q96HN2 611 aaKnown RBP8.83□□□□□ -1
VCAN-210ENST00000513960 FOXN4Q96NZ1 517 aa8.83□□□□□ -1
VCAN-210ENST00000513960 POFUT1Q9H488 388 aa8.83□□□□□ -1
VCAN-210ENST00000513960 KIR3DX1Q9H7L2 352 aa8.83□□□□□ -1
VCAN-210ENST00000513960 IL21RQ9HBE5 538 aa8.83□□□□□ -1
VCAN-210ENST00000513960 PRMT8Q9NR22 394 aaPredicted RBP8.83□□□□□ -1
VCAN-210ENST00000513960 CLDND1Q9NY35 253 aa8.83□□□□□ -1
VCAN-210ENST00000513960 PURGQ9UJV8 347 aaKnown RBP8.83□□□□□ -1
VCAN-210ENST00000513960 CES1P1Q9UKY3 287 aa8.83□□□□□ -1
VCAN-210ENST00000513960 A0A1B0GTH9 108 aa8.82□□□□□ -1
VCAN-210ENST00000513960 PRSS38A1L453 326 aa8.82□□□□□ -1
VCAN-210ENST00000513960 TVP23AA6NH52 213 aa8.82□□□□□ -1
VCAN-210ENST00000513960 SSX5O60225 188 aa8.82□□□□□ -1
VCAN-210ENST00000513960 CD3DP04234 171 aa8.82□□□□□ -1
VCAN-210ENST00000513960 DCNP07585 359 aaKnown RBP8.82□□□□□ -1
VCAN-210ENST00000513960 PEBP1P30086 187 aaKnown RBP8.82□□□□□ -1
VCAN-210ENST00000513960 ACTA2P62736 377 aa8.82□□□□□ -1
VCAN-210ENST00000513960 ACTG2P63267 376 aa8.82□□□□□ -1
VCAN-210ENST00000513960 EIPR1Q53HC9 387 aa8.82□□□□□ -1
VCAN-210ENST00000513960 CD163Q86VB7 1156 aa8.82□□□□□ -1
VCAN-210ENST00000513960 LRRC25Q8N386 305 aaPredicted RBP8.82□□□□□ -1
VCAN-210ENST00000513960 ZNF511Q8NB15 262 aa8.82□□□□□ -1
VCAN-210ENST00000513960 CHST4Q8NCG5 386 aa8.82□□□□□ -1
VCAN-210ENST00000513960 CCDC107Q8WV48 283 aa8.82□□□□□ -1
VCAN-210ENST00000513960 PNPLA2Q96AD5 504 aa8.82□□□□□ -1
VCAN-210ENST00000513960 PGLYRP3Q96LB9 341 aa8.82□□□□□ -1
VCAN-210ENST00000513960 LMAN2LQ9H0V9 348 aa8.82□□□□□ -1
VCAN-210ENST00000513960 NPDC1Q9NQX5 325 aaPredicted RBP8.82□□□□□ -1
VCAN-210ENST00000513960 CMC2Q9NRP2 79 aa8.82□□□□□ -1
VCAN-210ENST00000513960 NDRG3Q9UGV2 375 aa8.82□□□□□ -1
VCAN-210ENST00000513960 ZNF346Q9UL40 294 aaKnown RBP8.82□□□□□ -1
VCAN-210ENST00000513960 MOKQ9UQ07 419 aa8.82□□□□□ -1
VCAN-210ENST00000513960 TRBV23-1A0A0A0MS06 115 aa8.82□□□□□ -1
VCAN-210ENST00000513960 OR2W5A6NFC9 320 aa8.82□□□□□ -1
VCAN-210ENST00000513960 URADA6NGE7 173 aa8.82□□□□□ -1
VCAN-210ENST00000513960 PLRG1O43660 514 aaKnown RBP8.82□□□□□ -1
VCAN-210ENST00000513960 DOK2O60496 412 aa8.82□□□□□ -1
VCAN-210ENST00000513960 AGR2O95994 175 aa8.82□□□□□ -1
VCAN-210ENST00000513960 ZNF888P0CJ79 500 aaPredicted RBP8.82□□□□□ -1
VCAN-210ENST00000513960 CNR1P21554 472 aa8.82□□□□□ -1
VCAN-210ENST00000513960 BDKRB2P30411 391 aa8.82□□□□□ -1
VCAN-210ENST00000513960 NTSR1P30989 418 aa8.82□□□□□ -1
VCAN-210ENST00000513960 CSF2RBP32927 897 aa8.82□□□□□ -1
VCAN-210ENST00000513960 ACTR1BP42025 376 aa8.82□□□□□ -1
VCAN-210ENST00000513960 PRKXP51817 358 aa8.82□□□□□ -1
VCAN-210ENST00000513960 ACTR1AP61163 376 aa8.82□□□□□ -1
VCAN-210ENST00000513960 ADAM8P78325 824 aa8.82□□□□□ -1
VCAN-210ENST00000513960 MAT1AQ00266 395 aaKnown RBP8.82□□□□□ -1
VCAN-210ENST00000513960 DMKNQ6E0U4 476 aaPredicted RBP8.82□□□□□ -1
VCAN-210ENST00000513960 FAM109BQ6ICB4 259 aaPredicted RBP8.82□□□□□ -1
VCAN-210ENST00000513960 OR2W3Q7Z3T1 314 aa8.82□□□□□ -1
VCAN-210ENST00000513960 TMEFF1Q8IYR6 380 aa8.82□□□□□ -1
VCAN-210ENST00000513960 ZNF784Q8NCA9 323 aaPredicted RBP8.82□□□□□ -1
VCAN-210ENST00000513960 OR4K14Q8NGD5 310 aa8.82□□□□□ -1
VCAN-210ENST00000513960 STOML3Q8TAV4 291 aa8.82□□□□□ -1
VCAN-210ENST00000513960 ZNF649Q9BS31 505 aa8.82□□□□□ -1
VCAN-210ENST00000513960 ZNF350Q9GZX5 532 aa8.82□□□□□ -1
VCAN-210ENST00000513960 TBC1D29Q9UFV1 150 aa8.82□□□□□ -1
VCAN-210ENST00000513960 OR5V1Q9UGF6 321 aa8.82□□□□□ -1
VCAN-210ENST00000513960 SCN3AQ9NY46 2000 aa8.82□□□□□ -1
VCAN-210ENST00000513960 F5P12259 2224 aa8.82□□□□□ -1
VCAN-210ENST00000513960 KIF26AQ9ULI4 1882 aaPredicted RBP8.82□□□□□ -1
VCAN-210ENST00000513960 A0A0B4J2A0 478 aa8.82□□□□□ -1
VCAN-210ENST00000513960 OR6C68A6NDL8 312 aa8.82□□□□□ -1
VCAN-210ENST00000513960 LINC00587B1AMM8 73 aa8.82□□□□□ -1
VCAN-210ENST00000513960 IMPA2O14732 288 aa8.82□□□□□ -1
VCAN-210ENST00000513960 NDUFA2O43678 99 aa8.82□□□□□ -1
VCAN-210ENST00000513960 RAB3DO95716 219 aa8.82□□□□□ -1
VCAN-210ENST00000513960 ADPRHP54922 357 aa8.82□□□□□ -1
VCAN-210ENST00000513960 RAB5BP61020 215 aa8.82□□□□□ -1
VCAN-210ENST00000513960 CTAG1AP78358 180 aa8.82□□□□□ -1
VCAN-210ENST00000513960 AIMP2Q13155 320 aaKnown RBP8.82□□□□□ -1
VCAN-210ENST00000513960 SQSTM1Q13501 440 aa8.82□□□□□ -1
VCAN-210ENST00000513960 TDGQ13569 410 aa8.82□□□□□ -1
VCAN-210ENST00000513960 ENPP2Q13822 863 aa8.82□□□□□ -1
VCAN-210ENST00000513960 DEFB134Q4QY38 66 aa8.82□□□□□ -1
VCAN-210ENST00000513960 KRBOX4Q5JUW0 171 aa8.82□□□□□ -1
VCAN-210ENST00000513960 AVPI1Q5T686 147 aa8.82□□□□□ -1
VCAN-210ENST00000513960 B3GNTL1Q67FW5 361 aaPredicted RBP8.82□□□□□ -1
VCAN-210ENST00000513960 ZNF425Q6IV72 752 aa8.82□□□□□ -1
VCAN-210ENST00000513960 FAM111BQ6SJ93 734 aa8.82□□□□□ -1
VCAN-210ENST00000513960 RHOUQ7L0Q8 258 aa8.82□□□□□ -1
VCAN-210ENST00000513960 ARMC10Q8N2F6 343 aa8.82□□□□□ -1
VCAN-210ENST00000513960 C10orf90Q96M02 699 aa8.82□□□□□ -1
VCAN-210ENST00000513960 INPP5EQ9NRR6 644 aa8.82□□□□□ -1
VCAN-210ENST00000513960 SHPKQ9UHJ6 478 aa8.82□□□□□ -1
VCAN-210ENST00000513960 FOXJ3Q9UPW0 622 aa8.82□□□□□ -1
VCAN-210ENST00000513960 GALR3O60755 368 aaPredicted RBP8.81□□□□□ -1
VCAN-210ENST00000513960 HIST1H1CP16403 213 aaKnown RBP8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms