RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 ZNF674Q2M3X9 581 aa12.43□□□□□ -0.42
USP42-206ENST00000479544 EXOSC6Q5RKV6 272 aaKnown RBP12.43□□□□□ -0.42
USP42-206ENST00000479544 THSD4Q6ZMP0 1018 aa12.43□□□□□ -0.42
USP42-206ENST00000479544 FAM219AQ8IW50 185 aa12.43□□□□□ -0.42
USP42-206ENST00000479544 SLC39A11Q8N1S5 342 aa12.43□□□□□ -0.42
USP42-206ENST00000479544 ARRDC3Q96B67 414 aa12.43□□□□□ -0.42
USP42-206ENST00000479544 JSRP1Q96MG2 331 aaPredicted RBP12.43□□□□□ -0.42
USP42-206ENST00000479544 ADOQ96SZ5 270 aa12.43□□□□□ -0.42
USP42-206ENST00000479544 KCNJ16Q9NPI9 418 aa12.43□□□□□ -0.42
USP42-206ENST00000479544 PRSS16Q9NQE7 514 aa12.43□□□□□ -0.42
USP42-206ENST00000479544 SPHK1Q9NYA1 384 aa12.43□□□□□ -0.42
USP42-206ENST00000479544 RHBDD3Q9Y3P4 386 aa12.43□□□□□ -0.42
USP42-206ENST00000479544 HEBP2Q9Y5Z4 205 aa12.43□□□□□ -0.42
USP42-206ENST00000479544 SIPA1L1O43166 1804 aa12.43□□□□□ -0.42
USP42-206ENST00000479544 TGM6O95932 706 aa12.43□□□□□ -0.42
USP42-206ENST00000479544 CSTBP04080 98 aaKnown RBP12.43□□□□□ -0.42
USP42-206ENST00000479544 HOXB3P14651 431 aaPredicted RBP12.43□□□□□ -0.42
USP42-206ENST00000479544 SNU13P55769 128 aaKnown RBP12.43□□□□□ -0.42
USP42-206ENST00000479544 VAMP2P63027 116 aa12.43□□□□□ -0.42
USP42-206ENST00000479544 CAMK2DQ13557 499 aa12.43□□□□□ -0.42
USP42-206ENST00000479544 ALG11Q2TAA5 492 aa12.43□□□□□ -0.42
USP42-206ENST00000479544 SLC48A1Q6P1K1 146 aa12.43□□□□□ -0.42
USP42-206ENST00000479544 SEZ6L2Q6UXD5 910 aa12.43□□□□□ -0.42
USP42-206ENST00000479544 TMEM91Q6ZNR0 172 aa12.43□□□□□ -0.42
USP42-206ENST00000479544 CBLN2Q8IUK8 224 aa12.43□□□□□ -0.42
USP42-206ENST00000479544 OR14K1Q8NGZ2 314 aa12.43□□□□□ -0.42
USP42-206ENST00000479544 WNT2BQ93097 391 aa12.43□□□□□ -0.42
USP42-206ENST00000479544 FAM3DQ96BQ1 224 aa12.43□□□□□ -0.42
USP42-206ENST00000479544 RBP7Q96R05 134 aa12.43□□□□□ -0.42
USP42-206ENST00000479544 OR2M4Q96R27 311 aa12.43□□□□□ -0.42
USP42-206ENST00000479544 CMC2Q9NRP2 79 aa12.43□□□□□ -0.42
USP42-206ENST00000479544 SRPX2O60687 465 aaPredicted RBP12.42□□□□□ -0.42
USP42-206ENST00000479544 JMJD7P0C870 316 aa12.42□□□□□ -0.42
USP42-206ENST00000479544 PRKAR1BP31321 381 aa12.42□□□□□ -0.42
USP42-206ENST00000479544 IRS1P35568 1242 aa12.42□□□□□ -0.42
USP42-206ENST00000479544 CSNK2A1P68400 391 aaPredicted RBP12.42□□□□□ -0.42
USP42-206ENST00000479544 GPR18Q14330 331 aa12.42□□□□□ -0.42
USP42-206ENST00000479544 SLC16A13Q7RTY0 426 aa12.42□□□□□ -0.42
USP42-206ENST00000479544 CSNK2A3Q8NEV1 391 aa12.42□□□□□ -0.42
USP42-206ENST00000479544 SENP5Q96HI0 755 aaPredicted RBP12.42□□□□□ -0.42
USP42-206ENST00000479544 SDF2Q99470 211 aa12.42□□□□□ -0.42
USP42-206ENST00000479544 TGIF2Q9GZN2 237 aa12.42□□□□□ -0.42
USP42-206ENST00000479544 CLDND1Q9NY35 253 aa12.42□□□□□ -0.42
USP42-206ENST00000479544 ZNF629Q9UEG4 869 aaPredicted RBP12.42□□□□□ -0.42
USP42-206ENST00000479544 INSL6Q9Y581 213 aa12.42□□□□□ -0.42
USP42-206ENST00000479544 SNAPC5O75971 98 aa12.42□□□□□ -0.42
USP42-206ENST00000479544 ZP3P21754 424 aa12.42□□□□□ -0.42
USP42-206ENST00000479544 CPT2P23786 658 aa12.42□□□□□ -0.42
USP42-206ENST00000479544 BDKRB2P30411 391 aa12.42□□□□□ -0.42
USP42-206ENST00000479544 CDK5R1Q15078 307 aa12.42□□□□□ -0.42
USP42-206ENST00000479544 MEP1BQ16820 701 aa12.42□□□□□ -0.42
USP42-206ENST00000479544 ADGRG3Q86Y34 549 aa12.42□□□□□ -0.42
USP42-206ENST00000479544 DEFB119Q8N690 84 aa12.42□□□□□ -0.42
USP42-206ENST00000479544 ZNF283Q8N7M2 679 aa12.42□□□□□ -0.42
USP42-206ENST00000479544 TRMT2BQ96GJ1 504 aaKnown RBP12.42□□□□□ -0.42
USP42-206ENST00000479544 SPACA5Q96QH8 159 aa12.42□□□□□ -0.42
USP42-206ENST00000479544 BTBD2Q9BX70 525 aa12.42□□□□□ -0.42
USP42-206ENST00000479544 ZNF346Q9UL40 294 aaKnown RBP12.42□□□□□ -0.42
USP42-206ENST00000479544 MIA3Q5JRA6 1907 aa12.42□□□□□ -0.42
USP42-206ENST00000479544 MCRIP1C9JLW8 97 aa12.42□□□□□ -0.42
USP42-206ENST00000479544 RNH1P13489 461 aaKnown RBP12.42□□□□□ -0.42
USP42-206ENST00000479544 AVPR2P30518 371 aa12.42□□□□□ -0.42
USP42-206ENST00000479544 P2RX1P51575 399 aa12.42□□□□□ -0.42
USP42-206ENST00000479544 CLDN6P56747 220 aa12.42□□□□□ -0.42
USP42-206ENST00000479544 MRPL58Q14197 206 aaKnown RBP12.42□□□□□ -0.42
USP42-206ENST00000479544 B3GNTL1Q67FW5 361 aaPredicted RBP12.42□□□□□ -0.42
USP42-206ENST00000479544 SLC18B1Q6NT16 456 aa12.42□□□□□ -0.42
USP42-206ENST00000479544 PXKQ7Z7A4 578 aa12.42□□□□□ -0.42
USP42-206ENST00000479544 TMEM200AQ86VY9 491 aa12.42□□□□□ -0.42
USP42-206ENST00000479544 ZNF565Q8N9K5 539 aa12.42□□□□□ -0.42
USP42-206ENST00000479544 ZNF75AQ96N20 296 aa12.42□□□□□ -0.42
USP42-206ENST00000479544 ELF5Q9UKW6 265 aaPredicted RBP12.42□□□□□ -0.42
USP42-206ENST00000479544 LOC105371267A0A1B0GV96 52 aa12.42□□□□□ -0.42
USP42-206ENST00000479544 KCNJ13O60928 360 aa12.42□□□□□ -0.42
USP42-206ENST00000479544 ANKRD34CP0C6C1 535 aa12.42□□□□□ -0.42
USP42-206ENST00000479544 NAT2P11245 290 aa12.42□□□□□ -0.42
USP42-206ENST00000479544 MAOAP21397 527 aa12.42□□□□□ -0.42
USP42-206ENST00000479544 OR9A4Q8NGU2 314 aa12.42□□□□□ -0.42
USP42-206ENST00000479544 LHFPL5Q8TAF8 219 aa12.42□□□□□ -0.42
USP42-206ENST00000479544 SLC22A8Q8TCC7 542 aa12.42□□□□□ -0.42
USP42-206ENST00000479544 TCEAL2Q9H3H9 227 aaPredicted RBP12.42□□□□□ -0.42
USP42-206ENST00000479544 EVA1AQ9H8M9 152 aa12.42□□□□□ -0.42
USP42-206ENST00000479544 VSX1Q9NZR4 365 aaPredicted RBP12.42□□□□□ -0.42
USP42-206ENST00000479544 ADRA2AP08913 450 aa12.41□□□□□ -0.42
USP42-206ENST00000479544 CAV2P51636 162 aa12.41□□□□□ -0.42
USP42-206ENST00000479544 CRYBA2P53672 197 aa12.41□□□□□ -0.42
USP42-206ENST00000479544 SNRPNP63162 240 aaKnown RBP12.41□□□□□ -0.42
USP42-206ENST00000479544 HNF4GQ14541 408 aa12.41□□□□□ -0.42
USP42-206ENST00000479544 ASTLQ6HA08 431 aaPredicted RBP12.41□□□□□ -0.42
USP42-206ENST00000479544 LRRC69Q6ZNQ3 347 aa12.41□□□□□ -0.42
USP42-206ENST00000479544 TRAPPC6BQ86SZ2 158 aa12.41□□□□□ -0.42
USP42-206ENST00000479544 CPXM2Q8N436 756 aa12.41□□□□□ -0.42
USP42-206ENST00000479544 BPIFCQ8NFQ6 507 aa12.41□□□□□ -0.42
USP42-206ENST00000479544 SGPP1Q9BX95 441 aa12.41□□□□□ -0.42
USP42-206ENST00000479544 PCDHGA9Q9Y5G4 932 aaKnown RBP12.41□□□□□ -0.42
USP42-206ENST00000479544 A0A1B0GUH1 482 aa12.41□□□□□ -0.42
USP42-206ENST00000479544 ARRDC5A6NEK1 342 aa12.41□□□□□ -0.42
USP42-206ENST00000479544 NDUFS1P28331 727 aa12.41□□□□□ -0.42
USP42-206ENST00000479544 NPY4RP50391 375 aa12.41□□□□□ -0.42
USP42-206ENST00000479544 MMP15P51511 669 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms