RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 FRAT1Q92837 279 aaPredicted RBP3.73□□□□□ -1.81
UPF3B-203ENST00000478840 GSDMAQ96QA5 445 aa3.73□□□□□ -1.81
UPF3B-203ENST00000478840 SLC29A1Q99808 456 aa3.73□□□□□ -1.81
UPF3B-203ENST00000478840 CWH43Q9H720 699 aa3.73□□□□□ -1.81
UPF3B-203ENST00000478840 AIG1Q9NVV5 245 aa3.73□□□□□ -1.81
UPF3B-203ENST00000478840 LSM7Q9UK45 103 aaKnown RBP3.73□□□□□ -1.81
UPF3B-203ENST00000478840 CLEC4EQ9ULY5 219 aa3.73□□□□□ -1.81
UPF3B-203ENST00000478840 NEUROG3Q9Y4Z2 214 aa3.73□□□□□ -1.81
UPF3B-203ENST00000478840 MROH5Q6ZUA9 1318 aa3.72□□□□□ -1.81
UPF3B-203ENST00000478840 LRRK1Q38SD2 2015 aa3.72□□□□□ -1.81
UPF3B-203ENST00000478840 KCNE1BA0A087WTH5 132 aa3.72□□□□□ -1.81
UPF3B-203ENST00000478840 KBTBD11-OT1A0A1B0GTJ5 212 aa3.72□□□□□ -1.81
UPF3B-203ENST00000478840 ZFP92A6NM28 416 aa3.72□□□□□ -1.81
UPF3B-203ENST00000478840 ERVV-1B6SEH8 477 aa3.72□□□□□ -1.81
UPF3B-203ENST00000478840 KRTAP4-16G5E9R7 235 aaPredicted RBP3.72□□□□□ -1.81
UPF3B-203ENST00000478840 AIM2O14862 343 aa3.72□□□□□ -1.81
UPF3B-203ENST00000478840 AKR7A2O43488 359 aa3.72□□□□□ -1.81
UPF3B-203ENST00000478840 EIF3GO75821 320 aaKnown RBP eCLIP3.72□□□□□ -1.81
UPF3B-203ENST00000478840 MYL2P10916 166 aa3.72□□□□□ -1.81
UPF3B-203ENST00000478840 GTF2E2P29084 291 aaKnown RBP3.72□□□□□ -1.81
UPF3B-203ENST00000478840 SLC1A1P43005 524 aa3.72□□□□□ -1.81
UPF3B-203ENST00000478840 GPR6P46095 362 aaPredicted RBP3.72□□□□□ -1.81
UPF3B-203ENST00000478840 RGRP47804 291 aa3.72□□□□□ -1.81
UPF3B-203ENST00000478840 UQCRFS1P47985 274 aa3.72□□□□□ -1.81
UPF3B-203ENST00000478840 RFX3P48380 749 aa3.72□□□□□ -1.81
UPF3B-203ENST00000478840 CX3CR1P49238 355 aa3.72□□□□□ -1.81
UPF3B-203ENST00000478840 MRPL19P49406 292 aaKnown RBP3.72□□□□□ -1.81
UPF3B-203ENST00000478840 ILKQ13418 452 aa3.72□□□□□ -1.81
UPF3B-203ENST00000478840 DOC2AQ14183 400 aa3.72□□□□□ -1.81
UPF3B-203ENST00000478840 ITIH4Q14624 930 aa3.72□□□□□ -1.81
UPF3B-203ENST00000478840 KYAT1Q16773 422 aa3.72□□□□□ -1.81
UPF3B-203ENST00000478840 XKR4Q5GH76 650 aa3.72□□□□□ -1.81
UPF3B-203ENST00000478840 TMEM179BQ7Z7N9 219 aa3.72□□□□□ -1.81
UPF3B-203ENST00000478840 PRR22Q8IZ63 422 aa3.72□□□□□ -1.81
UPF3B-203ENST00000478840 PUSL1Q8N0Z8 303 aaKnown RBP3.72□□□□□ -1.81
UPF3B-203ENST00000478840 LIX1Q8N485 282 aa3.72□□□□□ -1.81
UPF3B-203ENST00000478840 C14orf178Q8N769 122 aaPredicted RBP3.72□□□□□ -1.81
UPF3B-203ENST00000478840 RHEBL1Q8TAI7 183 aa3.72□□□□□ -1.81
UPF3B-203ENST00000478840 SGK3Q96BR1 496 aa3.72□□□□□ -1.81
UPF3B-203ENST00000478840 TSG101Q99816 390 aa3.72□□□□□ -1.81
UPF3B-203ENST00000478840 NAT9Q9BTE0 207 aa3.72□□□□□ -1.81
UPF3B-203ENST00000478840 DEFB127Q9H1M4 99 aa3.72□□□□□ -1.81
UPF3B-203ENST00000478840 TDRD3Q9H7E2 651 aaKnown RBP3.72□□□□□ -1.81
UPF3B-203ENST00000478840 SLC25A22Q9H936 323 aa3.72□□□□□ -1.81
UPF3B-203ENST00000478840 LYRM4Q9HD34 91 aa3.72□□□□□ -1.81
UPF3B-203ENST00000478840 XCL2Q9UBD3 114 aa3.72□□□□□ -1.81
UPF3B-203ENST00000478840 CLCF1Q9UBD9 225 aa3.72□□□□□ -1.81
UPF3B-203ENST00000478840 CLN8Q9UBY8 286 aa3.72□□□□□ -1.81
UPF3B-203ENST00000478840 RBMY1BA6NDE4 496 aaKnown RBP3.71□□□□□ -1.82
UPF3B-203ENST00000478840 RBMY1EA6NEQ0 496 aaKnown RBP3.71□□□□□ -1.82
UPF3B-203ENST00000478840 SMCO2A6NFE2 343 aa3.71□□□□□ -1.82
UPF3B-203ENST00000478840 C12orf71A8MTZ7 269 aa3.71□□□□□ -1.82
UPF3B-203ENST00000478840 PHOX2AO14813 284 aa3.71□□□□□ -1.82
UPF3B-203ENST00000478840 HUS1O60921 280 aa3.71□□□□□ -1.82
UPF3B-203ENST00000478840 EEDO75530 441 aaKnown RBP3.71□□□□□ -1.82
UPF3B-203ENST00000478840 CLPXO76031 633 aa3.71□□□□□ -1.82
UPF3B-203ENST00000478840 FGGP02679 453 aa3.71□□□□□ -1.82
UPF3B-203ENST00000478840 RBMY1DP0C7P1 496 aaKnown RBP3.71□□□□□ -1.82
UPF3B-203ENST00000478840 POLR2MP0CAP2 368 aa3.71□□□□□ -1.82
UPF3B-203ENST00000478840 RBMY1A1P0DJD3 496 aaKnown RBP3.71□□□□□ -1.82
UPF3B-203ENST00000478840 SLC2A5P22732 501 aa3.71□□□□□ -1.82
UPF3B-203ENST00000478840 COX7A1P24310 79 aa3.71□□□□□ -1.82
UPF3B-203ENST00000478840 VDAC2P45880 294 aaPredicted RBP3.71□□□□□ -1.82
UPF3B-203ENST00000478840 SLC11A1P49279 550 aa3.71□□□□□ -1.82
UPF3B-203ENST00000478840 APOC4P55056 127 aa3.71□□□□□ -1.82
UPF3B-203ENST00000478840 TAS2R19P59542 299 aa3.71□□□□□ -1.82
UPF3B-203ENST00000478840 EIF3EP60228 445 aaKnown RBP3.71□□□□□ -1.82
UPF3B-203ENST00000478840 IGLV3-21P80748 117 aaPredicted RBP3.71□□□□□ -1.82
UPF3B-203ENST00000478840 ACVR1Q04771 509 aa3.71□□□□□ -1.82
UPF3B-203ENST00000478840 PDIA2Q13087 525 aaKnown RBP3.71□□□□□ -1.82
UPF3B-203ENST00000478840 CYTH1Q15438 398 aa3.71□□□□□ -1.82
UPF3B-203ENST00000478840 C9orf129Q5T035 196 aaKnown RBP3.71□□□□□ -1.82
UPF3B-203ENST00000478840 GPR157Q5UAW9 335 aa3.71□□□□□ -1.82
UPF3B-203ENST00000478840 TWF2Q6IBS0 349 aaKnown RBP3.71□□□□□ -1.82
UPF3B-203ENST00000478840 ZNF774Q6NX45 483 aa3.71□□□□□ -1.82
UPF3B-203ENST00000478840 ZNF620Q6ZNG0 422 aa3.71□□□□□ -1.82
UPF3B-203ENST00000478840 MMAAQ8IVH4 418 aaKnown RBP3.71□□□□□ -1.82
UPF3B-203ENST00000478840 CEND1Q8N111 149 aa3.71□□□□□ -1.82
UPF3B-203ENST00000478840 PDIK1LQ8N165 341 aa3.71□□□□□ -1.82
UPF3B-203ENST00000478840 CD177Q8N6Q3 437 aa3.71□□□□□ -1.82
UPF3B-203ENST00000478840 GPX8Q8TED1 209 aa3.71□□□□□ -1.82
UPF3B-203ENST00000478840 FCRL1Q96LA6 429 aa3.71□□□□□ -1.82
UPF3B-203ENST00000478840 PRRC1Q96M27 445 aa3.71□□□□□ -1.82
UPF3B-203ENST00000478840 TEKT3Q9BXF9 490 aa3.71□□□□□ -1.82
UPF3B-203ENST00000478840 POLR2J2Q9GZM3 115 aaKnown RBP3.71□□□□□ -1.82
UPF3B-203ENST00000478840 POLR2J3Q9H1A7 115 aaKnown RBP3.71□□□□□ -1.82
UPF3B-203ENST00000478840 UGT1A10Q9HAW8 530 aa3.71□□□□□ -1.82
UPF3B-203ENST00000478840 MRPL22Q9NWU5 206 aaKnown RBP3.71□□□□□ -1.82
UPF3B-203ENST00000478840 ZNF256Q9Y2P7 627 aaPredicted RBP3.71□□□□□ -1.82
UPF3B-203ENST00000478840 MMP24Q9Y5R2 645 aa3.71□□□□□ -1.82
UPF3B-203ENST00000478840 TNRQ92752 1358 aa3.71□□□□□ -1.82
UPF3B-203ENST00000478840 KIR2DL5BA0A0G2JN68 375 aa3.7□□□□□ -1.82
UPF3B-203ENST00000478840 KIR2DL5BA0A0G2JPC4 375 aa3.7□□□□□ -1.82
UPF3B-203ENST00000478840 PSMB11A5LHX3 300 aa3.7□□□□□ -1.82
UPF3B-203ENST00000478840 CDC7O00311 574 aa3.7□□□□□ -1.82
UPF3B-203ENST00000478840 TNFSF11O14788 317 aa3.7□□□□□ -1.82
UPF3B-203ENST00000478840 EIF2S2P20042 333 aaKnown RBP3.7□□□□□ -1.82
UPF3B-203ENST00000478840 DCKP27707 260 aa3.7□□□□□ -1.82
UPF3B-203ENST00000478840 HMOX2P30519 316 aa3.7□□□□□ -1.82
UPF3B-203ENST00000478840 AQP2P41181 271 aa3.7□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms