RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 NPHS2Q9NP85 383 aa16.26■□□□□ 0.19
CCDC88B-206ENST00000473405 CDC42EP3Q9UKI2 254 aa16.26■□□□□ 0.19
CCDC88B-206ENST00000473405 USP22Q9UPT9 525 aa16.26■□□□□ 0.19
CCDC88B-206ENST00000473405 IGHV4-61A0A0C4DH41 118 aa16.25■□□□□ 0.19
CCDC88B-206ENST00000473405 LOC390937A0A1W2PQ73 354 aa16.25■□□□□ 0.19
CCDC88B-206ENST00000473405 TMEM129A0AVI4 362 aa16.25■□□□□ 0.19
CCDC88B-206ENST00000473405 CPSF4LA6NMK7 179 aaKnown RBP16.25■□□□□ 0.19
CCDC88B-206ENST00000473405 hCG_2039718K7EN88 272 aa16.25■□□□□ 0.19
CCDC88B-206ENST00000473405 EDF1O60869 148 aaKnown RBP16.25■□□□□ 0.19
CCDC88B-206ENST00000473405 MT-ATP6P00846 226 aa16.25■□□□□ 0.19
CCDC88B-206ENST00000473405 IGFBP1P08833 259 aaPredicted RBP16.25■□□□□ 0.19
CCDC88B-206ENST00000473405 B4GALT1P15291 398 aa16.25■□□□□ 0.19
CCDC88B-206ENST00000473405 PCGF2P35227 344 aa16.25■□□□□ 0.19
CCDC88B-206ENST00000473405 LSM11P83369 360 aaKnown RBP eCLIP16.25■□□□□ 0.19
CCDC88B-206ENST00000473405 GGTLC2Q14390 218 aa16.25■□□□□ 0.19
CCDC88B-206ENST00000473405 ENTPD8Q5MY95 495 aa16.25■□□□□ 0.19
CCDC88B-206ENST00000473405 CYB5R2Q6BCY4 276 aa16.25■□□□□ 0.19
CCDC88B-206ENST00000473405 SVOPLQ8N434 492 aa16.25■□□□□ 0.19
CCDC88B-206ENST00000473405 OR5J2Q8NH18 312 aa16.25■□□□□ 0.19
CCDC88B-206ENST00000473405 TAMM41Q96BW9 452 aa16.25■□□□□ 0.19
CCDC88B-206ENST00000473405 MS4A3Q96HJ5 214 aa16.25■□□□□ 0.19
CCDC88B-206ENST00000473405 FOXN4Q96NZ1 517 aa16.25■□□□□ 0.19
CCDC88B-206ENST00000473405 KCNK17Q96T54 332 aa16.25■□□□□ 0.19
CCDC88B-206ENST00000473405 ULBP2Q9BZM5 246 aa16.25■□□□□ 0.19
CCDC88B-206ENST00000473405 MYOZ1Q9NP98 299 aaPredicted RBP16.25■□□□□ 0.19
CCDC88B-206ENST00000473405 TRIM33Q9UPN9 1127 aa16.25■□□□□ 0.19
CCDC88B-206ENST00000473405 SERPINI2O75830 405 aa16.24■□□□□ 0.19
CCDC88B-206ENST00000473405 FAM157CP0CG43 387 aa16.24■□□□□ 0.19
CCDC88B-206ENST00000473405 ZNF14P17017 642 aaPredicted RBP16.24■□□□□ 0.19
CCDC88B-206ENST00000473405 NPR2P20594 1047 aa16.24■□□□□ 0.19
CCDC88B-206ENST00000473405 AHCYP23526 432 aa16.24■□□□□ 0.19
CCDC88B-206ENST00000473405 GZMMP51124 257 aa16.24■□□□□ 0.19
CCDC88B-206ENST00000473405 SNTB2Q13425 540 aaKnown RBP16.24■□□□□ 0.19
CCDC88B-206ENST00000473405 NFYCQ13952 458 aa16.24■□□□□ 0.19
CCDC88B-206ENST00000473405 ZNF74Q16587 644 aa16.24■□□□□ 0.19
CCDC88B-206ENST00000473405 GSG1Q2KHT4 349 aa16.24■□□□□ 0.19
CCDC88B-206ENST00000473405 KRT80Q6KB66 452 aa16.24■□□□□ 0.19
CCDC88B-206ENST00000473405 ZNF813Q6ZN06 617 aa16.24■□□□□ 0.19
CCDC88B-206ENST00000473405 CDK20Q8IZL9 346 aa16.24■□□□□ 0.19
CCDC88B-206ENST00000473405 ZCCHC24Q8N2G6 241 aaKnown RBP16.24■□□□□ 0.19
CCDC88B-206ENST00000473405 ADAMTS16Q8TE57 1224 aa16.24■□□□□ 0.19
CCDC88B-206ENST00000473405 TSPEARQ8WU66 669 aa16.24■□□□□ 0.19
CCDC88B-206ENST00000473405 DOK1Q99704 481 aa16.24■□□□□ 0.19
CCDC88B-206ENST00000473405 ZNF426Q9BUY5 554 aa16.24■□□□□ 0.19
CCDC88B-206ENST00000473405 PCDHAC1Q9H158 963 aa16.24■□□□□ 0.19
CCDC88B-206ENST00000473405 B3GAT2Q9NPZ5 323 aa16.24■□□□□ 0.19
CCDC88B-206ENST00000473405 C11orf98E9PRG8 122 aa16.23■□□□□ 0.19
CCDC88B-206ENST00000473405 FBP2O00757 339 aa16.23■□□□□ 0.19
CCDC88B-206ENST00000473405 IFNA2P01563 188 aa16.23■□□□□ 0.19
CCDC88B-206ENST00000473405 ADORA3P0DMS8 318 aa16.23■□□□□ 0.19
CCDC88B-206ENST00000473405 CD79AP11912 226 aa16.23■□□□□ 0.19
CCDC88B-206ENST00000473405 IFNGR1P15260 489 aa16.23■□□□□ 0.19
CCDC88B-206ENST00000473405 BIDP55957 195 aa16.23■□□□□ 0.19
CCDC88B-206ENST00000473405 DAG1Q14118 895 aa16.23■□□□□ 0.19
CCDC88B-206ENST00000473405 CARTPTQ16568 116 aa16.23■□□□□ 0.19
CCDC88B-206ENST00000473405 MSMPQ1L6U9 139 aa16.23■□□□□ 0.19
CCDC88B-206ENST00000473405 HDXQ7Z353 690 aa16.23■□□□□ 0.19
CCDC88B-206ENST00000473405 SPATA21Q7Z572 469 aa16.23■□□□□ 0.19
CCDC88B-206ENST00000473405 PATL1Q86TB9 770 aaKnown RBP16.23■□□□□ 0.19
CCDC88B-206ENST00000473405 SLC30A8Q8IWU4 369 aa16.23■□□□□ 0.19
CCDC88B-206ENST00000473405 IL17RDQ8NFM7 739 aa16.23■□□□□ 0.19
CCDC88B-206ENST00000473405 OR6N1Q8NGY5 312 aa16.23■□□□□ 0.19
CCDC88B-206ENST00000473405 OR10A6Q8NH74 314 aa16.23■□□□□ 0.19
CCDC88B-206ENST00000473405 VANGL1Q8TAA9 524 aaPredicted RBP16.23■□□□□ 0.19
CCDC88B-206ENST00000473405 MSI2Q96DH6 328 aaKnown RBP16.23■□□□□ 0.19
CCDC88B-206ENST00000473405 FOXB1Q99853 325 aa16.23■□□□□ 0.19
CCDC88B-206ENST00000473405 BPESC1Q9GZL8 116 aa16.23■□□□□ 0.19
CCDC88B-206ENST00000473405 VIPAS39Q9H9C1 493 aa16.23■□□□□ 0.19
CCDC88B-206ENST00000473405 TAS2R5Q9NYW4 299 aa16.23■□□□□ 0.19
CCDC88B-206ENST00000473405 SLC7A7Q9UM01 511 aa16.23■□□□□ 0.19
CCDC88B-206ENST00000473405 TENM1Q9UKZ4 2725 aa16.23■□□□□ 0.19
CCDC88B-206ENST00000473405 A0A0G2JND7 137 aa16.22■□□□□ 0.19
CCDC88B-206ENST00000473405 ZNF726A6NNF4 738 aa16.22■□□□□ 0.19
CCDC88B-206ENST00000473405 ZNF35P13682 527 aa16.22■□□□□ 0.19
CCDC88B-206ENST00000473405 NR4A1P22736 598 aa16.22■□□□□ 0.19
CCDC88B-206ENST00000473405 IGFBP5P24593 272 aa16.22■□□□□ 0.19
CCDC88B-206ENST00000473405 CSNK1A1P48729 337 aa16.22■□□□□ 0.19
CCDC88B-206ENST00000473405 GZMKP49863 264 aa16.22■□□□□ 0.19
CCDC88B-206ENST00000473405 PIGFQ07326 219 aa16.22■□□□□ 0.19
CCDC88B-206ENST00000473405 LRRC17Q8N6Y2 441 aa16.22■□□□□ 0.19
CCDC88B-206ENST00000473405 ARIH2OSQ8N7S6 290 aa16.22■□□□□ 0.19
CCDC88B-206ENST00000473405 SIKE1Q9BRV8 207 aa16.22■□□□□ 0.19
CCDC88B-206ENST00000473405 RAB1BQ9H0U4 201 aa16.22■□□□□ 0.19
CCDC88B-206ENST00000473405 FBXO9Q9UK97 447 aaPredicted RBP16.22■□□□□ 0.19
CCDC88B-206ENST00000473405 POFUT2Q9Y2G5 429 aa16.22■□□□□ 0.19
CCDC88B-206ENST00000473405 TRAPPC13A5PLN9 417 aa16.21■□□□□ 0.19
CCDC88B-206ENST00000473405 FXYD1O00168 92 aa16.21■□□□□ 0.19
CCDC88B-206ENST00000473405 KPNA4O00629 521 aaPredicted RBP16.21■□□□□ 0.19
CCDC88B-206ENST00000473405 CH25HO95992 272 aa16.21■□□□□ 0.19
CCDC88B-206ENST00000473405 DAOP14920 347 aa16.21■□□□□ 0.19
CCDC88B-206ENST00000473405 H2AFXP16104 143 aaPredicted RBP16.21■□□□□ 0.19
CCDC88B-206ENST00000473405 GIFP27352 417 aa16.21■□□□□ 0.19
CCDC88B-206ENST00000473405 VMACQ2NL98 169 aa16.21■□□□□ 0.19
CCDC88B-206ENST00000473405 TRMT5Q32P41 509 aaKnown RBP16.21■□□□□ 0.19
CCDC88B-206ENST00000473405 SLC35D2Q76EJ3 337 aa16.21■□□□□ 0.19
CCDC88B-206ENST00000473405 PHC2Q8IXK0 858 aa16.21■□□□□ 0.19
CCDC88B-206ENST00000473405 OR6X1Q8NH79 312 aa16.21■□□□□ 0.19
CCDC88B-206ENST00000473405 TMEM54Q969K7 222 aa16.21■□□□□ 0.19
CCDC88B-206ENST00000473405 PRSS27Q9BQR3 290 aa16.21■□□□□ 0.19
CCDC88B-206ENST00000473405 SOX7Q9BT81 388 aa16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms