RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 OR2T27Q8NH04 317 aa12.28□□□□□ -0.44
CCDC88C-201ENST00000331194 OR2L2Q8NH16 312 aa12.28□□□□□ -0.44
CCDC88C-201ENST00000331194 SFXN5Q8TD22 340 aa12.28□□□□□ -0.44
CCDC88C-201ENST00000331194 PPP1R1CQ8WVI7 109 aa12.28□□□□□ -0.44
CCDC88C-201ENST00000331194 RAB40AQ8WXH6 277 aa12.28□□□□□ -0.44
CCDC88C-201ENST00000331194 DTD2Q96FN9 168 aa12.28□□□□□ -0.44
CCDC88C-201ENST00000331194 ZFP57Q9NU63 452 aa12.28□□□□□ -0.44
CCDC88C-201ENST00000331194 TNFSF18Q9UNG2 199 aa12.28□□□□□ -0.44
CCDC88C-201ENST00000331194 MED31Q9Y3C7 131 aa12.28□□□□□ -0.44
CCDC88C-201ENST00000331194 A0A0D9SG52 128 aa12.27□□□□□ -0.44
CCDC88C-201ENST00000331194 PMS2P1A4D2B8 440 aa12.27□□□□□ -0.44
CCDC88C-201ENST00000331194 OR14I1A6ND48 311 aa12.27□□□□□ -0.44
CCDC88C-201ENST00000331194 BCL2L11O43521 198 aa12.27□□□□□ -0.44
CCDC88C-201ENST00000331194 RAD1O60671 282 aa12.27□□□□□ -0.44
CCDC88C-201ENST00000331194 RPN2P04844 631 aa12.27□□□□□ -0.44
CCDC88C-201ENST00000331194 MAPK3P27361 379 aaPredicted RBP12.27□□□□□ -0.44
CCDC88C-201ENST00000331194 SSTP61278 116 aa12.27□□□□□ -0.44
CCDC88C-201ENST00000331194 DCDP81605 110 aaKnown RBP12.27□□□□□ -0.44
CCDC88C-201ENST00000331194 TPGS2Q68CL5 300 aa12.27□□□□□ -0.44
CCDC88C-201ENST00000331194 SLC48A1Q6P1K1 146 aa12.27□□□□□ -0.44
CCDC88C-201ENST00000331194 KRT77Q7Z794 578 aa12.27□□□□□ -0.44
CCDC88C-201ENST00000331194 RANBP3LQ86VV4 465 aaPredicted RBP12.27□□□□□ -0.44
CCDC88C-201ENST00000331194 DCUN1D3Q8IWE4 304 aa12.27□□□□□ -0.44
CCDC88C-201ENST00000331194 OR4A4PQ8NGN8 299 aa12.27□□□□□ -0.44
CCDC88C-201ENST00000331194 MS4A6EQ96DS6 147 aa12.27□□□□□ -0.44
CCDC88C-201ENST00000331194 CMTM3Q96MX0 182 aa12.27□□□□□ -0.44
CCDC88C-201ENST00000331194 SLITRK2Q9H156 845 aa12.27□□□□□ -0.44
CCDC88C-201ENST00000331194 PELI2Q9HAT8 420 aa12.27□□□□□ -0.44
CCDC88C-201ENST00000331194 IL36AQ9UHA7 158 aa12.27□□□□□ -0.44
CCDC88C-201ENST00000331194 INSL5Q9Y5Q6 135 aa12.27□□□□□ -0.44
CCDC88C-201ENST00000331194 TRANK1O15050 2925 aa12.27□□□□□ -0.44
CCDC88C-201ENST00000331194 TICRRQ7Z2Z1 1910 aa12.27□□□□□ -0.45
CCDC88C-201ENST00000331194 TSPAN11A1L157 253 aa12.27□□□□□ -0.45
CCDC88C-201ENST00000331194 MCIDASD6RGH6 385 aa12.27□□□□□ -0.45
CCDC88C-201ENST00000331194 SPINT1O43278 529 aa12.27□□□□□ -0.45
CCDC88C-201ENST00000331194 ALOX12BO75342 701 aa12.27□□□□□ -0.45
CCDC88C-201ENST00000331194 SNAPC5O75971 98 aa12.27□□□□□ -0.45
CCDC88C-201ENST00000331194 ST6GAL1P15907 406 aa12.27□□□□□ -0.45
CCDC88C-201ENST00000331194 FAUP35544 74 aaKnown RBP12.27□□□□□ -0.45
CCDC88C-201ENST00000331194 ARFIP1P53367 373 aa12.27□□□□□ -0.45
CCDC88C-201ENST00000331194 FHL1Q13642 323 aa12.27□□□□□ -0.45
CCDC88C-201ENST00000331194 TRMT12Q53H54 448 aaKnown RBP12.27□□□□□ -0.45
CCDC88C-201ENST00000331194 NKAIN2Q5VXU1 208 aa12.27□□□□□ -0.45
CCDC88C-201ENST00000331194 MFSD12Q6NUT3 480 aa12.27□□□□□ -0.45
CCDC88C-201ENST00000331194 RHOUQ7L0Q8 258 aa12.27□□□□□ -0.45
CCDC88C-201ENST00000331194 ZNF565Q8N9K5 539 aa12.27□□□□□ -0.45
CCDC88C-201ENST00000331194 ZNF681Q96N22 645 aa12.27□□□□□ -0.45
CCDC88C-201ENST00000331194 SDF2Q99470 211 aa12.27□□□□□ -0.45
CCDC88C-201ENST00000331194 MENTQ9BUN1 341 aa12.27□□□□□ -0.45
CCDC88C-201ENST00000331194 SLC46A2Q9BY10 475 aa12.27□□□□□ -0.45
CCDC88C-201ENST00000331194 ZDHHC4Q9NPG8 344 aa12.27□□□□□ -0.45
CCDC88C-201ENST00000331194 PRSS16Q9NQE7 514 aa12.27□□□□□ -0.45
CCDC88C-201ENST00000331194 HAO2Q9NYQ3 351 aa12.27□□□□□ -0.45
CCDC88C-201ENST00000331194 FARSAQ9Y285 508 aaKnown RBP12.27□□□□□ -0.45
CCDC88C-201ENST00000331194 KIAA1549LQ6ZVL6 1849 aa12.27□□□□□ -0.45
CCDC88C-201ENST00000331194 OR2AT4A6NND4 320 aa12.26□□□□□ -0.45
CCDC88C-201ENST00000331194 GATCO43716 136 aaKnown RBP12.26□□□□□ -0.45
CCDC88C-201ENST00000331194 HTR3BO95264 441 aa12.26□□□□□ -0.45
CCDC88C-201ENST00000331194 ACTA2P62736 377 aa12.26□□□□□ -0.45
CCDC88C-201ENST00000331194 ACTG2P63267 376 aa12.26□□□□□ -0.45
CCDC88C-201ENST00000331194 PLAURQ03405 335 aa12.26□□□□□ -0.45
CCDC88C-201ENST00000331194 ZNF425Q6IV72 752 aa12.26□□□□□ -0.45
CCDC88C-201ENST00000331194 C11orf87Q6NUJ2 197 aa12.26□□□□□ -0.45
CCDC88C-201ENST00000331194 TMEM205Q6UW68 189 aa12.26□□□□□ -0.45
CCDC88C-201ENST00000331194 GALNT16Q8N428 558 aa12.26□□□□□ -0.45
CCDC88C-201ENST00000331194 ZSCAN1Q8NBB4 408 aa12.26□□□□□ -0.45
CCDC88C-201ENST00000331194 OR10R2Q8NGX6 335 aa12.26□□□□□ -0.45
CCDC88C-201ENST00000331194 ZNF251Q9BRH9 671 aa12.26□□□□□ -0.45
CCDC88C-201ENST00000331194 PRMT8Q9NR22 394 aaPredicted RBP12.26□□□□□ -0.45
CCDC88C-201ENST00000331194 CALML5Q9NZT1 146 aa12.26□□□□□ -0.45
CCDC88C-201ENST00000331194 TBC1D3EA0A087X179 549 aa12.26□□□□□ -0.45
CCDC88C-201ENST00000331194 TXNL1O43396 289 aa12.26□□□□□ -0.45
CCDC88C-201ENST00000331194 XRCC3O43542 346 aa12.26□□□□□ -0.45
CCDC88C-201ENST00000331194 RORAP35398 523 aa12.26□□□□□ -0.45
CCDC88C-201ENST00000331194 PPT1P50897 306 aa12.26□□□□□ -0.45
CCDC88C-201ENST00000331194 ZNF234Q14588 700 aa12.26□□□□□ -0.45
CCDC88C-201ENST00000331194 TCEA2Q15560 299 aa12.26□□□□□ -0.45
CCDC88C-201ENST00000331194 SCGB2B2Q4G0G5 96 aa12.26□□□□□ -0.45
CCDC88C-201ENST00000331194 PRAMEF8Q5VWM4 474 aa12.26□□□□□ -0.45
CCDC88C-201ENST00000331194 PRAMEF7Q5VXH5 474 aa12.26□□□□□ -0.45
CCDC88C-201ENST00000331194 STEAP1BQ6NZ63 245 aa12.26□□□□□ -0.45
CCDC88C-201ENST00000331194 ABHD17CQ6PCB6 329 aa12.26□□□□□ -0.45
CCDC88C-201ENST00000331194 TMPRSS11FQ6ZWK6 438 aa12.26□□□□□ -0.45
CCDC88C-201ENST00000331194 ZAR1Q86SH2 424 aa12.26□□□□□ -0.45
CCDC88C-201ENST00000331194 ARMC10Q8N2F6 343 aa12.26□□□□□ -0.45
CCDC88C-201ENST00000331194 RASD2Q96D21 266 aa12.26□□□□□ -0.45
CCDC88C-201ENST00000331194 GAREM1Q9H706 876 aa12.26□□□□□ -0.45
CCDC88C-201ENST00000331194 ADAP2Q9NPF8 381 aa12.26□□□□□ -0.45
CCDC88C-201ENST00000331194 KLHDC2Q9Y2U9 406 aa12.26□□□□□ -0.45
CCDC88C-201ENST00000331194 NOP16Q9Y3C1 178 aaKnown RBP12.26□□□□□ -0.45
CCDC88C-201ENST00000331194 TMEM82A0PJX8 343 aa12.26□□□□□ -0.45
CCDC88C-201ENST00000331194 WASH3PC4AMC7 463 aa12.26□□□□□ -0.45
CCDC88C-201ENST00000331194 AKAIN1P0CW23 69 aa12.26□□□□□ -0.45
CCDC88C-201ENST00000331194 AVPR2P30518 371 aa12.26□□□□□ -0.45
CCDC88C-201ENST00000331194 AQP2P41181 271 aa12.26□□□□□ -0.45
CCDC88C-201ENST00000331194 MPPED2Q15777 294 aa12.26□□□□□ -0.45
CCDC88C-201ENST00000331194 SYS1Q8N2H4 156 aa12.26□□□□□ -0.45
CCDC88C-201ENST00000331194 GTPBP8Q8N3Z3 284 aaPredicted RBP12.26□□□□□ -0.45
CCDC88C-201ENST00000331194 OR4K14Q8NGD5 310 aa12.26□□□□□ -0.45
CCDC88C-201ENST00000331194 NUBPLQ8TB37 319 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms