RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 SLC35F4A4IF30 521 aa18.07■□□□□ 0.48
CLN3-219ENST00000565778 TRAPPC13A5PLN9 417 aa18.07■□□□□ 0.48
CLN3-219ENST00000565778 ZNF726A6NNF4 738 aa18.07■□□□□ 0.48
CLN3-219ENST00000565778 PLPP3O14495 311 aa18.07■□□□□ 0.48
CLN3-219ENST00000565778 SERPINI2O75830 405 aa18.07■□□□□ 0.48
CLN3-219ENST00000565778 OR6A2O95222 327 aa18.07■□□□□ 0.48
CLN3-219ENST00000565778 MT-ATP6P00846 226 aa18.07■□□□□ 0.48
CLN3-219ENST00000565778 ADORA3P0DMS8 318 aa18.07■□□□□ 0.48
CLN3-219ENST00000565778 GUCY1A3Q02108 690 aa18.07■□□□□ 0.48
CLN3-219ENST00000565778 PUDPQ08623 228 aa18.07■□□□□ 0.48
CLN3-219ENST00000565778 HSP90B2PQ58FF3 399 aa18.07■□□□□ 0.48
CLN3-219ENST00000565778 CGB2Q6NT52 195 aa18.07■□□□□ 0.48
CLN3-219ENST00000565778 CCDC80Q76M96 950 aa18.07■□□□□ 0.48
CLN3-219ENST00000565778 TMEM123Q8N131 208 aa18.07■□□□□ 0.48
CLN3-219ENST00000565778 OR8J3Q8NGG0 315 aa18.07■□□□□ 0.48
CLN3-219ENST00000565778 HTRA1Q92743 480 aa18.07■□□□□ 0.48
CLN3-219ENST00000565778 PROX1Q92786 737 aa18.07■□□□□ 0.48
CLN3-219ENST00000565778 MOV10Q9HCE1 1003 aaKnown RBP18.07■□□□□ 0.48
CLN3-219ENST00000565778 GID8Q9NWU2 228 aa18.07■□□□□ 0.48
CLN3-219ENST00000565778 MED29Q9NX70 200 aa18.07■□□□□ 0.48
CLN3-219ENST00000565778 SH3GLB1Q9Y371 365 aa18.07■□□□□ 0.48
CLN3-219ENST00000565778 BBIP1A8MTZ0 92 aa18.06■□□□□ 0.48
CLN3-219ENST00000565778 C11orf98E9PRG8 122 aa18.06■□□□□ 0.48
CLN3-219ENST00000565778 CH25HO95992 272 aa18.06■□□□□ 0.48
CLN3-219ENST00000565778 HIST1H2ABP04908 130 aa18.06■□□□□ 0.48
CLN3-219ENST00000565778 CAPZA2P47755 286 aa18.06■□□□□ 0.48
CLN3-219ENST00000565778 PPP2R2BQ00005 443 aa18.06■□□□□ 0.48
CLN3-219ENST00000565778 COQ5Q5HYK3 327 aa18.06■□□□□ 0.48
CLN3-219ENST00000565778 PHYHD1Q5SRE7 291 aa18.06■□□□□ 0.48
CLN3-219ENST00000565778 REP15Q6BDI9 236 aa18.06■□□□□ 0.48
CLN3-219ENST00000565778 HIST3H2AQ7L7L0 130 aa18.06■□□□□ 0.48
CLN3-219ENST00000565778 PXKQ7Z7A4 578 aa18.06■□□□□ 0.48
CLN3-219ENST00000565778 SNX32Q86XE0 403 aa18.06■□□□□ 0.48
CLN3-219ENST00000565778 C20orf196Q8IYI0 205 aa18.06■□□□□ 0.48
CLN3-219ENST00000565778 PCYOX1LQ8NBM8 494 aa18.06■□□□□ 0.48
CLN3-219ENST00000565778 OR5J2Q8NH18 312 aa18.06■□□□□ 0.48
CLN3-219ENST00000565778 HIST1H2ACQ93077 130 aa18.06■□□□□ 0.48
CLN3-219ENST00000565778 FBXO17Q96EF6 278 aa18.06■□□□□ 0.48
CLN3-219ENST00000565778 LRR1Q96L50 414 aa18.06■□□□□ 0.48
CLN3-219ENST00000565778 KATNB1Q9BVA0 655 aa18.06■□□□□ 0.48
CLN3-219ENST00000565778 NELFAQ9H3P2 528 aa18.06■□□□□ 0.48
CLN3-219ENST00000565778 B3GAT2Q9NPZ5 323 aa18.06■□□□□ 0.48
CLN3-219ENST00000565778 HEATR1Q9H583 2144 aaKnown RBP18.05■□□□□ 0.48
CLN3-219ENST00000565778 THY1P04216 161 aa18.05■□□□□ 0.48
CLN3-219ENST00000565778 CBR1P16152 277 aa18.05■□□□□ 0.48
CLN3-219ENST00000565778 CAMK2DQ13557 499 aa18.05■□□□□ 0.48
CLN3-219ENST00000565778 C3orf36Q3SXR2 165 aa18.05■□□□□ 0.48
CLN3-219ENST00000565778 NHLRC1Q6VVB1 395 aa18.05■□□□□ 0.48
CLN3-219ENST00000565778 WDR88Q6ZMY6 472 aa18.05■□□□□ 0.48
CLN3-219ENST00000565778 CALHM3Q86XJ0 350 aa18.05■□□□□ 0.48
CLN3-219ENST00000565778 OR6N1Q8NGY5 312 aa18.05■□□□□ 0.48
CLN3-219ENST00000565778 C10orf82Q8WW14 230 aa18.05■□□□□ 0.48
CLN3-219ENST00000565778 MPP4Q96JB8 637 aa18.05■□□□□ 0.48
CLN3-219ENST00000565778 ZNF583Q96ND8 569 aa18.05■□□□□ 0.48
CLN3-219ENST00000565778 NANSQ9NR45 359 aa18.05■□□□□ 0.48
CLN3-219ENST00000565778 CRNNQ9UBG3 495 aaPredicted RBP18.05■□□□□ 0.48
CLN3-219ENST00000565778 BAG5Q9UL15 447 aa18.05■□□□□ 0.48
CLN3-219ENST00000565778 ZNF99A8MXY4 864 aaPredicted RBP18.04■□□□□ 0.48
CLN3-219ENST00000565778 FXYD1O00168 92 aa18.04■□□□□ 0.48
CLN3-219ENST00000565778 KPNA4O00629 521 aaPredicted RBP18.04■□□□□ 0.48
CLN3-219ENST00000565778 LYPD3O95274 346 aa18.04■□□□□ 0.48
CLN3-219ENST00000565778 IFNA14P01570 189 aa18.04■□□□□ 0.48
CLN3-219ENST00000565778 CECR9P0C854 216 aa18.04■□□□□ 0.48
CLN3-219ENST00000565778 NAAAQ02083 359 aa18.04■□□□□ 0.48
CLN3-219ENST00000565778 ERICH5Q6P6B1 374 aa18.04■□□□□ 0.48
CLN3-219ENST00000565778 VHLLQ6RSH7 139 aa18.04■□□□□ 0.48
CLN3-219ENST00000565778 CLEC2AQ6UVW9 174 aa18.04■□□□□ 0.48
CLN3-219ENST00000565778 DNM1P46Q6ZS02 220 aa18.04■□□□□ 0.48
CLN3-219ENST00000565778 CCDC36Q8IYA8 594 aa18.04■□□□□ 0.48
CLN3-219ENST00000565778 FAM169BQ8N8A8 192 aa18.04■□□□□ 0.48
CLN3-219ENST00000565778 USP22Q9UPT9 525 aa18.04■□□□□ 0.48
CLN3-219ENST00000565778 POFUT2Q9Y2G5 429 aa18.04■□□□□ 0.48
CLN3-219ENST00000565778 INAFM1C9JVW0 142 aa18.03■□□□□ 0.48
CLN3-219ENST00000565778 H7C417 338 aa18.03■□□□□ 0.48
CLN3-219ENST00000565778 SEC14L2O76054 403 aa18.03■□□□□ 0.48
CLN3-219ENST00000565778 IGLV1-44P01699 117 aa18.03■□□□□ 0.48
CLN3-219ENST00000565778 TP53P04637 393 aaPredicted RBP18.03■□□□□ 0.48
CLN3-219ENST00000565778 UMPSP11172 480 aa18.03■□□□□ 0.48
CLN3-219ENST00000565778 CRYBA2P53672 197 aa18.03■□□□□ 0.48
CLN3-219ENST00000565778 DSCR9P59020 149 aa18.03■□□□□ 0.48
CLN3-219ENST00000565778 ZNF74Q16587 644 aa18.03■□□□□ 0.48
CLN3-219ENST00000565778 MST1LQ2TV78 715 aa18.03■□□□□ 0.48
CLN3-219ENST00000565778 TSPYL5Q86VY4 417 aaPredicted RBP18.03■□□□□ 0.48
CLN3-219ENST00000565778 CARM1Q86X55 608 aa18.03■□□□□ 0.48
CLN3-219ENST00000565778 LRRC17Q8N6Y2 441 aa18.03■□□□□ 0.48
CLN3-219ENST00000565778 ULBP2Q9BZM5 246 aa18.03■□□□□ 0.48
CLN3-219ENST00000565778 PCDHAC1Q9H158 963 aa18.03■□□□□ 0.48
CLN3-219ENST00000565778 CA10Q9NS85 328 aa18.03■□□□□ 0.48
CLN3-219ENST00000565778 TAS2R5Q9NYW4 299 aa18.03■□□□□ 0.48
CLN3-219ENST00000565778 CAPN7Q9Y6W3 813 aa18.03■□□□□ 0.48
CLN3-219ENST00000565778 VSTM5A8MXK1 200 aa18.02■□□□□ 0.48
CLN3-219ENST00000565778 RNF13O43567 381 aa18.02■□□□□ 0.48
CLN3-219ENST00000565778 IGKV3-15P01624 115 aa18.02■□□□□ 0.48
CLN3-219ENST00000565778 CD79AP11912 226 aa18.02■□□□□ 0.48
CLN3-219ENST00000565778 IFNGR1P15260 489 aa18.02■□□□□ 0.48
CLN3-219ENST00000565778 TNFRSF1BP20333 461 aa18.02■□□□□ 0.48
CLN3-219ENST00000565778 CALCRP30988 508 aa18.02■□□□□ 0.48
CLN3-219ENST00000565778 ARR3P36575 388 aa18.02■□□□□ 0.48
CLN3-219ENST00000565778 SERPINF1P36955 418 aa18.02■□□□□ 0.48
CLN3-219ENST00000565778 IDH3GP51553 393 aaPredicted RBP18.02■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms