RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 TESQ9UGI8 421 aaKnown RBP14.82□□□□□ -0.04
CLN3-216ENST00000565316 USP22Q9UPT9 525 aa14.82□□□□□ -0.04
CLN3-216ENST00000565316 CORINQ9Y5Q5 1042 aa14.82□□□□□ -0.04
CLN3-216ENST00000565316 A0A087WUJ7 227 aa14.81□□□□□ -0.04
CLN3-216ENST00000565316 A0A0B4J2E0 115 aa14.81□□□□□ -0.04
CLN3-216ENST00000565316 A0A1B0GX12 115 aa14.81□□□□□ -0.04
CLN3-216ENST00000565316 VSTM5A8MXK1 200 aa14.81□□□□□ -0.04
CLN3-216ENST00000565316 hCG_2039718K7EN88 272 aa14.81□□□□□ -0.04
CLN3-216ENST00000565316 STAMBPO95630 424 aa14.81□□□□□ -0.04
CLN3-216ENST00000565316 BGLAPP02818 100 aa14.81□□□□□ -0.04
CLN3-216ENST00000565316 IGFBP1P08833 259 aaPredicted RBP14.81□□□□□ -0.04
CLN3-216ENST00000565316 GPX2P18283 190 aa14.81□□□□□ -0.04
CLN3-216ENST00000565316 IDH3AP50213 366 aa14.81□□□□□ -0.04
CLN3-216ENST00000565316 ADRM1Q16186 407 aa14.81□□□□□ -0.04
CLN3-216ENST00000565316 CARTPTQ16568 116 aa14.81□□□□□ -0.04
CLN3-216ENST00000565316 PAGE3Q5JUK9 113 aa14.81□□□□□ -0.04
CLN3-216ENST00000565316 PHYHD1Q5SRE7 291 aa14.81□□□□□ -0.04
CLN3-216ENST00000565316 FAM120AOSQ5T036 256 aa14.81□□□□□ -0.04
CLN3-216ENST00000565316 ZNF627Q7L945 461 aa14.81□□□□□ -0.04
CLN3-216ENST00000565316 UEVLDQ8IX04 471 aa14.81□□□□□ -0.04
CLN3-216ENST00000565316 NEU4Q8WWR8 484 aaPredicted RBP14.81□□□□□ -0.04
CLN3-216ENST00000565316 ANKRD27Q96NW4 1050 aa14.81□□□□□ -0.04
CLN3-216ENST00000565316 CCDC28BQ9BUN5 200 aa14.81□□□□□ -0.04
CLN3-216ENST00000565316 BPESC1Q9GZL8 116 aa14.81□□□□□ -0.04
CLN3-216ENST00000565316 IKZF5Q9H5V7 419 aa14.81□□□□□ -0.04
CLN3-216ENST00000565316 EVA1AQ9H8M9 152 aa14.81□□□□□ -0.04
CLN3-216ENST00000565316 PRORSD1PA6NEY8 169 aa14.8□□□□□ -0.04
CLN3-216ENST00000565316 POLR3GO15318 223 aaPredicted RBP14.8□□□□□ -0.04
CLN3-216ENST00000565316 TPST2O60704 377 aa14.8□□□□□ -0.04
CLN3-216ENST00000565316 HLA-DOBP13765 273 aa14.8□□□□□ -0.04
CLN3-216ENST00000565316 SRD5A1P18405 259 aa14.8□□□□□ -0.04
CLN3-216ENST00000565316 POU3F1Q03052 451 aaPredicted RBP14.8□□□□□ -0.04
CLN3-216ENST00000565316 OR1Q1Q15612 314 aa14.8□□□□□ -0.04
CLN3-216ENST00000565316 KRTAP24-1Q3LI83 254 aa14.8□□□□□ -0.04
CLN3-216ENST00000565316 IQCCQ4KMZ1 466 aa14.8□□□□□ -0.04
CLN3-216ENST00000565316 BEND6Q5SZJ8 279 aaPredicted RBP14.8□□□□□ -0.04
CLN3-216ENST00000565316 SVOPLQ8N434 492 aa14.8□□□□□ -0.04
CLN3-216ENST00000565316 BHLHE22Q8NFJ8 381 aaPredicted RBP14.8□□□□□ -0.04
CLN3-216ENST00000565316 EPYCQ99645 322 aa14.8□□□□□ -0.04
CLN3-216ENST00000565316 EBF4Q9BQW3 602 aa14.8□□□□□ -0.04
CLN3-216ENST00000565316 WFDC6Q9BQY6 131 aa14.8□□□□□ -0.04
CLN3-216ENST00000565316 TMEM27Q9HBJ8 222 aa14.8□□□□□ -0.04
CLN3-216ENST00000565316 MRPL39Q9NYK5 338 aaKnown RBP14.8□□□□□ -0.04
CLN3-216ENST00000565316 CCDC167Q9P0B6 97 aa14.8□□□□□ -0.04
CLN3-216ENST00000565316 M0R3G1 203 aa14.79□□□□□ -0.04
CLN3-216ENST00000565316 TACSTD2P09758 323 aa14.79□□□□□ -0.04
CLN3-216ENST00000565316 DAOP14920 347 aa14.79□□□□□ -0.04
CLN3-216ENST00000565316 CBLP22681 906 aa14.79□□□□□ -0.04
CLN3-216ENST00000565316 NR4A1P22736 598 aa14.79□□□□□ -0.04
CLN3-216ENST00000565316 NPRL3Q12980 569 aa14.79□□□□□ -0.04
CLN3-216ENST00000565316 SCARB2Q14108 478 aa14.79□□□□□ -0.04
CLN3-216ENST00000565316 DAG1Q14118 895 aa14.79□□□□□ -0.04
CLN3-216ENST00000565316 SWT1Q5T5J6 900 aaKnown RBP14.79□□□□□ -0.04
CLN3-216ENST00000565316 SPATA21Q7Z572 469 aa14.79□□□□□ -0.04
CLN3-216ENST00000565316 WDFY1Q8IWB7 410 aa14.79□□□□□ -0.04
CLN3-216ENST00000565316 ZCCHC24Q8N2G6 241 aaKnown RBP14.79□□□□□ -0.04
CLN3-216ENST00000565316 ZNF786Q8N393 782 aa14.79□□□□□ -0.04
CLN3-216ENST00000565316 ZNF75AQ96N20 296 aa14.79□□□□□ -0.04
CLN3-216ENST00000565316 ZNF607Q96SK3 696 aa14.79□□□□□ -0.04
CLN3-216ENST00000565316 SOX7Q9BT81 388 aa14.79□□□□□ -0.04
CLN3-216ENST00000565316 TMEM43Q9BTV4 400 aa14.79□□□□□ -0.04
CLN3-216ENST00000565316 CHODLQ9H9P2 273 aa14.79□□□□□ -0.04
CLN3-216ENST00000565316 NOX3Q9HBY0 568 aa14.79□□□□□ -0.04
CLN3-216ENST00000565316 SLCO1B3Q9NPD5 702 aa14.79□□□□□ -0.04
CLN3-216ENST00000565316 SELENONQ9NZV5 590 aa14.79□□□□□ -0.04
CLN3-216ENST00000565316 CORO2BQ9UQ03 480 aa14.79□□□□□ -0.04
CLN3-216ENST00000565316 NOX1Q9Y5S8 564 aa14.79□□□□□ -0.04
CLN3-216ENST00000565316 SERPINB7O75635 380 aa14.78□□□□□ -0.04
CLN3-216ENST00000565316 SEC14L2O76054 403 aa14.78□□□□□ -0.04
CLN3-216ENST00000565316 TGFAP01135 160 aa14.78□□□□□ -0.04
CLN3-216ENST00000565316 HLA-HP01893 362 aa14.78□□□□□ -0.04
CLN3-216ENST00000565316 ERCC1P07992 297 aaPredicted RBP14.78□□□□□ -0.04
CLN3-216ENST00000565316 NQO1P15559 274 aaKnown RBP14.78□□□□□ -0.04
CLN3-216ENST00000565316 SLC6A2P23975 617 aa14.78□□□□□ -0.04
CLN3-216ENST00000565316 CAPZA2P47755 286 aa14.78□□□□□ -0.04
CLN3-216ENST00000565316 EVX1P49640 407 aa14.78□□□□□ -0.04
CLN3-216ENST00000565316 ATP4BP51164 291 aa14.78□□□□□ -0.04
CLN3-216ENST00000565316 CDH12P55289 794 aa14.78□□□□□ -0.04
CLN3-216ENST00000565316 RGS8P57771 180 aaPredicted RBP14.78□□□□□ -0.04
CLN3-216ENST00000565316 NCALDP61601 193 aa14.78□□□□□ -0.04
CLN3-216ENST00000565316 IL1RL1Q01638 556 aa14.78□□□□□ -0.04
CLN3-216ENST00000565316 AGBL2Q5U5Z8 902 aa14.78□□□□□ -0.04
CLN3-216ENST00000565316 DLEU7Q6UYE1 221 aa14.78□□□□□ -0.04
CLN3-216ENST00000565316 LINC00114Q6XXX2 140 aa14.78□□□□□ -0.04
CLN3-216ENST00000565316 PXKQ7Z7A4 578 aa14.78□□□□□ -0.04
CLN3-216ENST00000565316 CDK20Q8IZL9 346 aa14.78□□□□□ -0.04
CLN3-216ENST00000565316 HIPK4Q8NE63 616 aa14.78□□□□□ -0.04
CLN3-216ENST00000565316 CKAP2Q8WWK9 683 aa14.78□□□□□ -0.04
CLN3-216ENST00000565316 HPS1Q92902 700 aa14.78□□□□□ -0.04
CLN3-216ENST00000565316 TXNDC15Q96J42 360 aa14.78□□□□□ -0.04
CLN3-216ENST00000565316 MOGAT1Q96PD6 335 aa14.78□□□□□ -0.04
CLN3-216ENST00000565316 EMC6Q9BV81 110 aa14.78□□□□□ -0.04
CLN3-216ENST00000565316 ASPNQ9BXN1 380 aa14.78□□□□□ -0.04
CLN3-216ENST00000565316 DENND2DQ9H6A0 471 aaPredicted RBP14.78□□□□□ -0.04
CLN3-216ENST00000565316 PLPP3O14495 311 aa14.77□□□□□ -0.04
CLN3-216ENST00000565316 FMO6PO60774 539 aa14.77□□□□□ -0.04
CLN3-216ENST00000565316 LILRA1O75019 489 aa14.77□□□□□ -0.04
CLN3-216ENST00000565316 ERLIN1O75477 346 aa14.77□□□□□ -0.04
CLN3-216ENST00000565316 MFN2O95140 757 aa14.77□□□□□ -0.04
CLN3-216ENST00000565316 ZNF35P13682 527 aa14.77□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms