RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 HNRNPCL4P0DMR1 293 aa13.29□□□□□ -0.28
CLSTN3-213ENST00000541953 ZNF35P13682 527 aa13.29□□□□□ -0.28
CLSTN3-213ENST00000541953 B4GALT1P15291 398 aa13.29□□□□□ -0.28
CLSTN3-213ENST00000541953 ZNF14P17017 642 aaPredicted RBP13.29□□□□□ -0.28
CLSTN3-213ENST00000541953 NR4A1P22736 598 aa13.29□□□□□ -0.28
CLSTN3-213ENST00000541953 ARR3P36575 388 aa13.29□□□□□ -0.28
CLSTN3-213ENST00000541953 DVL1P1P54792 670 aaPredicted RBP13.29□□□□□ -0.28
CLSTN3-213ENST00000541953 NXNQ6DKJ4 435 aa13.29□□□□□ -0.28
CLSTN3-213ENST00000541953 SLC2A7Q6PXP3 512 aa13.29□□□□□ -0.28
CLSTN3-213ENST00000541953 MSRB3Q8IXL7 192 aa13.29□□□□□ -0.28
CLSTN3-213ENST00000541953 MREGQ8N565 214 aa13.29□□□□□ -0.28
CLSTN3-213ENST00000541953 ANKK1Q8NFD2 765 aa13.29□□□□□ -0.28
CLSTN3-213ENST00000541953 MAELQ96JY0 434 aaKnown RBP13.29□□□□□ -0.28
CLSTN3-213ENST00000541953 ANKRD27Q96NW4 1050 aa13.29□□□□□ -0.28
CLSTN3-213ENST00000541953 MOGAT1Q96PD6 335 aa13.29□□□□□ -0.28
CLSTN3-213ENST00000541953 RACGAP1Q9H0H5 632 aa13.29□□□□□ -0.28
CLSTN3-213ENST00000541953 METTL17Q9H7H0 456 aaPredicted RBP13.29□□□□□ -0.28
CLSTN3-213ENST00000541953 USP22Q9UPT9 525 aa13.29□□□□□ -0.28
CLSTN3-213ENST00000541953 PCDHB14Q9Y5E9 798 aa13.29□□□□□ -0.28
CLSTN3-213ENST00000541953 TPST2O60704 377 aa13.28□□□□□ -0.28
CLSTN3-213ENST00000541953 ANP32DO95626 131 aa13.28□□□□□ -0.28
CLSTN3-213ENST00000541953 BGLAPP02818 100 aa13.28□□□□□ -0.28
CLSTN3-213ENST00000541953 IL6P05231 212 aa13.28□□□□□ -0.28
CLSTN3-213ENST00000541953 CD79AP11912 226 aa13.28□□□□□ -0.28
CLSTN3-213ENST00000541953 GTF2E2P29084 291 aaKnown RBP13.28□□□□□ -0.28
CLSTN3-213ENST00000541953 RUNX1T1Q06455 604 aa13.28□□□□□ -0.28
CLSTN3-213ENST00000541953 C1DQ13901 141 aaKnown RBP13.28□□□□□ -0.28
CLSTN3-213ENST00000541953 MFSD13AQ14CX5 517 aa13.28□□□□□ -0.28
CLSTN3-213ENST00000541953 RGNQ15493 299 aa13.28□□□□□ -0.28
CLSTN3-213ENST00000541953 C6orf10Q5SRN2 563 aa13.28□□□□□ -0.28
CLSTN3-213ENST00000541953 FAM69AQ5T7M9 428 aa13.28□□□□□ -0.28
CLSTN3-213ENST00000541953 THSD4Q6ZMP0 1018 aa13.28□□□□□ -0.28
CLSTN3-213ENST00000541953 C1orf229Q6ZS94 237 aaPredicted RBP13.28□□□□□ -0.28
CLSTN3-213ENST00000541953 ZNF584Q8IVC4 421 aa13.28□□□□□ -0.28
CLSTN3-213ENST00000541953 C20orf196Q8IYI0 205 aa13.28□□□□□ -0.28
CLSTN3-213ENST00000541953 GLB1L3Q8NCI6 653 aaPredicted RBP13.28□□□□□ -0.28
CLSTN3-213ENST00000541953 GTF2H4Q92759 462 aa13.28□□□□□ -0.28
CLSTN3-213ENST00000541953 CENPHQ9H3R5 247 aa13.28□□□□□ -0.28
CLSTN3-213ENST00000541953 BCL2L10Q9HD36 194 aa13.28□□□□□ -0.28
CLSTN3-213ENST00000541953 A4GALTQ9NPC4 353 aa13.28□□□□□ -0.28
CLSTN3-213ENST00000541953 SDR39U1Q9NRG7 319 aaPredicted RBP13.28□□□□□ -0.28
CLSTN3-213ENST00000541953 SLC25A37Q9NYZ2 338 aa13.28□□□□□ -0.28
CLSTN3-213ENST00000541953 SLAMF8Q9P0V8 285 aa13.28□□□□□ -0.28
CLSTN3-213ENST00000541953 CMAHPQ9Y471 501 aa13.28□□□□□ -0.28
CLSTN3-213ENST00000541953 TRAV36DV7A0A075B6V5 113 aa13.27□□□□□ -0.29
CLSTN3-213ENST00000541953 A0A087WUJ7 227 aa13.27□□□□□ -0.29
CLSTN3-213ENST00000541953 ZNF500O60304 480 aaPredicted RBP13.27□□□□□ -0.29
CLSTN3-213ENST00000541953 AVPP01185 164 aa13.27□□□□□ -0.29
CLSTN3-213ENST00000541953 BMP2P12643 396 aa13.27□□□□□ -0.29
CLSTN3-213ENST00000541953 PAX7P23759 505 aa13.27□□□□□ -0.29
CLSTN3-213ENST00000541953 GIPRP48546 466 aa13.27□□□□□ -0.29
CLSTN3-213ENST00000541953 POU3F1Q03052 451 aaPredicted RBP13.27□□□□□ -0.29
CLSTN3-213ENST00000541953 LRRC74AQ0VAA2 488 aa13.27□□□□□ -0.29
CLSTN3-213ENST00000541953 CAMK2DQ13557 499 aa13.27□□□□□ -0.29
CLSTN3-213ENST00000541953 FXNQ16595 210 aa13.27□□□□□ -0.29
CLSTN3-213ENST00000541953 GSG1Q2KHT4 349 aa13.27□□□□□ -0.29
CLSTN3-213ENST00000541953 ALKBH6Q3KRA9 238 aa13.27□□□□□ -0.29
CLSTN3-213ENST00000541953 CEP85LQ5SZL2 805 aa13.27□□□□□ -0.29
CLSTN3-213ENST00000541953 WDR93Q6P2C0 686 aa13.27□□□□□ -0.29
CLSTN3-213ENST00000541953 ZNF813Q6ZN06 617 aa13.27□□□□□ -0.29
CLSTN3-213ENST00000541953 H1FNTQ75WM6 255 aaPredicted RBP13.27□□□□□ -0.29
CLSTN3-213ENST00000541953 PAQR4Q8N4S7 273 aaPredicted RBP13.27□□□□□ -0.29
CLSTN3-213ENST00000541953 PIK3C3Q8NEB9 887 aa13.27□□□□□ -0.29
CLSTN3-213ENST00000541953 NFKBIDQ8NI38 313 aa13.27□□□□□ -0.29
CLSTN3-213ENST00000541953 MGARPQ8TDB4 240 aa13.27□□□□□ -0.29
CLSTN3-213ENST00000541953 SLC41A3Q96GZ6 507 aa13.27□□□□□ -0.29
CLSTN3-213ENST00000541953 ITCHQ96J02 903 aa13.27□□□□□ -0.29
CLSTN3-213ENST00000541953 TSPAN32Q96QS1 320 aa13.27□□□□□ -0.29
CLSTN3-213ENST00000541953 IKZF5Q9H5V7 419 aa13.27□□□□□ -0.29
CLSTN3-213ENST00000541953 OCEL1Q9H607 264 aa13.27□□□□□ -0.29
CLSTN3-213ENST00000541953 HIF1ANQ9NWT6 349 aa13.27□□□□□ -0.29
CLSTN3-213ENST00000541953 TREM2Q9NZC2 230 aa13.27□□□□□ -0.29
CLSTN3-213ENST00000541953 ZIM2Q9NZV7 527 aa13.27□□□□□ -0.29
CLSTN3-213ENST00000541953 REV1Q9UBZ9 1251 aa13.27□□□□□ -0.29
CLSTN3-213ENST00000541953 ZNF232Q9UNY5 417 aa13.27□□□□□ -0.29
CLSTN3-213ENST00000541953 IFT52Q9Y366 437 aa13.27□□□□□ -0.29
CLSTN3-213ENST00000541953 LOC102725191A0A1B0GVB3 256 aa13.26□□□□□ -0.29
CLSTN3-213ENST00000541953 M0R233 179 aa13.26□□□□□ -0.29
CLSTN3-213ENST00000541953 SYNGR3O43761 229 aa13.26□□□□□ -0.29
CLSTN3-213ENST00000541953 RP2O75695 350 aa13.26□□□□□ -0.29
CLSTN3-213ENST00000541953 NAT2P11245 290 aa13.26□□□□□ -0.29
CLSTN3-213ENST00000541953 IDO1P14902 403 aa13.26□□□□□ -0.29
CLSTN3-213ENST00000541953 PTDSS1P48651 473 aaKnown RBP13.26□□□□□ -0.29
CLSTN3-213ENST00000541953 POLR2JP52435 117 aaKnown RBP13.26□□□□□ -0.29
CLSTN3-213ENST00000541953 HNRNPA0Q13151 305 aaKnown RBP13.26□□□□□ -0.29
CLSTN3-213ENST00000541953 MGAM2Q2M2H8 2515 aa13.26□□□□□ -0.29
CLSTN3-213ENST00000541953 ALG10BQ5I7T1 473 aa13.26□□□□□ -0.29
CLSTN3-213ENST00000541953 UEVLDQ8IX04 471 aa13.26□□□□□ -0.29
CLSTN3-213ENST00000541953 LSMEM1Q8N8F7 131 aa13.26□□□□□ -0.29
CLSTN3-213ENST00000541953 BBS10Q8TAM1 723 aa13.26□□□□□ -0.29
CLSTN3-213ENST00000541953 GTF3AQ92664 365 aaKnown RBP13.26□□□□□ -0.29
CLSTN3-213ENST00000541953 SLC38A4Q969I6 547 aa13.26□□□□□ -0.29
CLSTN3-213ENST00000541953 C12orf10Q9HB07 376 aa13.26□□□□□ -0.29
CLSTN3-213ENST00000541953 ZNF275Q9NSD4 429 aaPredicted RBP13.26□□□□□ -0.29
CLSTN3-213ENST00000541953 B4DSR2 109 aa13.25□□□□□ -0.29
CLSTN3-213ENST00000541953 CLIC1O00299 241 aa13.25□□□□□ -0.29
CLSTN3-213ENST00000541953 SERPINI2O75830 405 aa13.25□□□□□ -0.29
CLSTN3-213ENST00000541953 ERCC1P07992 297 aaPredicted RBP13.25□□□□□ -0.29
CLSTN3-213ENST00000541953 ARAFP10398 606 aa13.25□□□□□ -0.29
CLSTN3-213ENST00000541953 SAGP10523 405 aaPredicted RBP13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms