RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 SFT2D3Q587I9 215 aa3.46□□□□□ -1.86
VPS29-202ENST00000447578 C10orf120Q5SQS8 335 aa3.46□□□□□ -1.86
VPS29-202ENST00000447578 LPCAT4Q643R3 524 aa3.46□□□□□ -1.86
VPS29-202ENST00000447578 FAM53AQ6NSI3 398 aaPredicted RBP3.46□□□□□ -1.86
VPS29-202ENST00000447578 FAM45BPQ6NSW5 357 aa3.46□□□□□ -1.86
VPS29-202ENST00000447578 FIP1L1Q6UN15 594 aaKnown RBP3.46□□□□□ -1.86
VPS29-202ENST00000447578 RPS27LQ71UM5 84 aaKnown RBP3.46□□□□□ -1.86
VPS29-202ENST00000447578 SETD3Q86TU7 594 aaPredicted RBP3.46□□□□□ -1.86
VPS29-202ENST00000447578 SLC22A9Q8IVM8 553 aa3.46□□□□□ -1.86
VPS29-202ENST00000447578 PGAM4Q8N0Y7 254 aa3.46□□□□□ -1.86
VPS29-202ENST00000447578 UMODL1-AS1Q8N2C9 162 aa3.46□□□□□ -1.86
VPS29-202ENST00000447578 CHDHQ8NE62 594 aaPredicted RBP3.46□□□□□ -1.86
VPS29-202ENST00000447578 OR13C2Q8NGS9 318 aa3.46□□□□□ -1.86
VPS29-202ENST00000447578 FAM45AQ8TCE6 357 aa3.46□□□□□ -1.86
VPS29-202ENST00000447578 BLOC1S5Q8TDH9 187 aa3.46□□□□□ -1.86
VPS29-202ENST00000447578 MRGPRDQ8TDS7 321 aa3.46□□□□□ -1.86
VPS29-202ENST00000447578 PDCD6IPQ8WUM4 868 aaKnown RBP3.46□□□□□ -1.86
VPS29-202ENST00000447578 ANKRD49Q8WVL7 239 aa3.46□□□□□ -1.86
VPS29-202ENST00000447578 RCN3Q96D15 328 aa3.46□□□□□ -1.86
VPS29-202ENST00000447578 CCDC126Q96EE4 140 aa3.46□□□□□ -1.86
VPS29-202ENST00000447578 TMA16Q96EY4 203 aaKnown RBP3.46□□□□□ -1.86
VPS29-202ENST00000447578 BTN2A3PQ96KV6 586 aa3.46□□□□□ -1.86
VPS29-202ENST00000447578 LRR1Q96L50 414 aa3.46□□□□□ -1.86
VPS29-202ENST00000447578 GLT1D1Q96MS3 346 aa3.46□□□□□ -1.86
VPS29-202ENST00000447578 RPRD1AQ96P16 312 aaPredicted RBP3.46□□□□□ -1.86
VPS29-202ENST00000447578 CASD1Q96PB1 797 aa3.46□□□□□ -1.86
VPS29-202ENST00000447578 SECISBP2Q96T21 854 aaKnown RBP3.46□□□□□ -1.86
VPS29-202ENST00000447578 ZNF184Q99676 751 aaPredicted RBP3.46□□□□□ -1.86
VPS29-202ENST00000447578 NPAS2Q99743 824 aa3.46□□□□□ -1.86
VPS29-202ENST00000447578 CLEC7AQ9BXN2 247 aa3.46□□□□□ -1.86
VPS29-202ENST00000447578 DGCR6LQ9BY27 220 aa3.46□□□□□ -1.86
VPS29-202ENST00000447578 YIPF3Q9GZM5 350 aa3.46□□□□□ -1.86
VPS29-202ENST00000447578 VCX3BQ9H321 246 aa3.46□□□□□ -1.86
VPS29-202ENST00000447578 MFSD1Q9H3U5 465 aa3.46□□□□□ -1.86
VPS29-202ENST00000447578 ZNF385DQ9H6B1 395 aa3.46□□□□□ -1.86
VPS29-202ENST00000447578 SUDS3Q9H7L9 328 aaPredicted RBP3.46□□□□□ -1.86
VPS29-202ENST00000447578 EFCAB1Q9HAE3 211 aa3.46□□□□□ -1.86
VPS29-202ENST00000447578 EML4Q9HC35 981 aaKnown RBP3.46□□□□□ -1.86
VPS29-202ENST00000447578 MARCH5Q9NX47 278 aa3.46□□□□□ -1.86
VPS29-202ENST00000447578 UXTQ9UBK9 157 aaPredicted RBP3.46□□□□□ -1.86
VPS29-202ENST00000447578 ZNF346Q9UL40 294 aaKnown RBP3.46□□□□□ -1.86
VPS29-202ENST00000447578 MRPS18CQ9Y3D5 142 aaKnown RBP3.46□□□□□ -1.86
VPS29-202ENST00000447578 NAALAD2Q9Y3Q0 740 aa3.46□□□□□ -1.86
VPS29-202ENST00000447578 ARL5AQ9Y689 179 aa3.46□□□□□ -1.86
VPS29-202ENST00000447578 EP400Q96L91 3159 aa3.46□□□□□ -1.86
VPS29-202ENST00000447578 TSC2P49815 1807 aa3.45□□□□□ -1.86
VPS29-202ENST00000447578 A0A0D9SEW6 157 aa3.45□□□□□ -1.86
VPS29-202ENST00000447578 LOC285095A0A1B0GVY8 99 aa3.45□□□□□ -1.86
VPS29-202ENST00000447578 SMIM24O75264 130 aa3.45□□□□□ -1.86
VPS29-202ENST00000447578 SUPT7LO94864 414 aa3.45□□□□□ -1.86
VPS29-202ENST00000447578 WISP3O95389 354 aaPredicted RBP3.45□□□□□ -1.86
VPS29-202ENST00000447578 IGSF6O95976 241 aa3.45□□□□□ -1.86
VPS29-202ENST00000447578 IGLV3-27P01718 113 aa3.45□□□□□ -1.86
VPS29-202ENST00000447578 FGF1P05230 155 aa3.45□□□□□ -1.86
VPS29-202ENST00000447578 PIRTP0C851 137 aa3.45□□□□□ -1.86
VPS29-202ENST00000447578 XRCC1P18887 633 aaPredicted RBP3.45□□□□□ -1.86
VPS29-202ENST00000447578 TCN1P20061 433 aaPredicted RBP3.45□□□□□ -1.86
VPS29-202ENST00000447578 OGNP20774 298 aaKnown RBP3.45□□□□□ -1.86
VPS29-202ENST00000447578 HNF1AP20823 631 aa3.45□□□□□ -1.86
VPS29-202ENST00000447578 ME2P23368 584 aa3.45□□□□□ -1.86
VPS29-202ENST00000447578 FCGR2CP31995 323 aa3.45□□□□□ -1.86
VPS29-202ENST00000447578 SLC11A1P49279 550 aa3.45□□□□□ -1.86
VPS29-202ENST00000447578 AQP4P55087 323 aa3.45□□□□□ -1.86
VPS29-202ENST00000447578 PSME3P61289 254 aa3.45□□□□□ -1.86
VPS29-202ENST00000447578 GNA12Q03113 381 aa3.45□□□□□ -1.86
VPS29-202ENST00000447578 DDX39BQ13838 428 aaKnown RBP3.45□□□□□ -1.86
VPS29-202ENST00000447578 FLOT2Q14254 428 aa3.45□□□□□ -1.86
VPS29-202ENST00000447578 FASTKQ14296 549 aaKnown RBP3.45□□□□□ -1.86
VPS29-202ENST00000447578 IHHQ14623 411 aa3.45□□□□□ -1.86
VPS29-202ENST00000447578 MAPRE2Q15555 327 aa3.45□□□□□ -1.86
VPS29-202ENST00000447578 PPP1R3AQ16821 1122 aa3.45□□□□□ -1.86
VPS29-202ENST00000447578 HLA-BQ31612 363 aa3.45□□□□□ -1.86
VPS29-202ENST00000447578 LINC01620Q4KN68 170 aa3.45□□□□□ -1.86
VPS29-202ENST00000447578 UNC50Q53HI1 259 aa3.45□□□□□ -1.86
VPS29-202ENST00000447578 PIGGQ5H8A4 983 aa3.45□□□□□ -1.86
VPS29-202ENST00000447578 ZNF678Q5SXM1 525 aa3.45□□□□□ -1.86
VPS29-202ENST00000447578 FAM219BQ5XKK7 198 aa3.45□□□□□ -1.86
VPS29-202ENST00000447578 REP15Q6BDI9 236 aa3.45□□□□□ -1.86
VPS29-202ENST00000447578 CLEC6AQ6EIG7 209 aa3.45□□□□□ -1.86
VPS29-202ENST00000447578 ZNF562Q6V9R5 426 aa3.45□□□□□ -1.86
VPS29-202ENST00000447578 ZNF841Q6ZN19 808 aa3.45□□□□□ -1.86
VPS29-202ENST00000447578 SPATA24Q86W54 205 aa3.45□□□□□ -1.86
VPS29-202ENST00000447578 APLFQ8IW19 511 aaPredicted RBP3.45□□□□□ -1.86
VPS29-202ENST00000447578 BBS5Q8N3I7 341 aa3.45□□□□□ -1.86
VPS29-202ENST00000447578 BHLHE23Q8NDY6 225 aa3.45□□□□□ -1.86
VPS29-202ENST00000447578 OR56B2PQ8NGI1 322 aa3.45□□□□□ -1.86
VPS29-202ENST00000447578 OR52K2Q8NGK3 314 aa3.45□□□□□ -1.86
VPS29-202ENST00000447578 OR1K1Q8NGR3 316 aa3.45□□□□□ -1.86
VPS29-202ENST00000447578 OR13C4Q8NGS5 318 aa3.45□□□□□ -1.86
VPS29-202ENST00000447578 OR4F5Q8NH21 305 aa3.45□□□□□ -1.86
VPS29-202ENST00000447578 OR52J3Q8NH60 311 aa3.45□□□□□ -1.86
VPS29-202ENST00000447578 SPPL2BQ8TCT7 592 aa3.45□□□□□ -1.86
VPS29-202ENST00000447578 RAET1EQ8TD07 263 aa3.45□□□□□ -1.86
VPS29-202ENST00000447578 SPRYD4Q8WW59 207 aaPredicted RBP3.45□□□□□ -1.86
VPS29-202ENST00000447578 DLX4Q92988 240 aaPredicted RBP3.45□□□□□ -1.86
VPS29-202ENST00000447578 ANKRD9Q96BM1 317 aaPredicted RBP3.45□□□□□ -1.86
VPS29-202ENST00000447578 TADA1Q96BN2 335 aa3.45□□□□□ -1.86
VPS29-202ENST00000447578 AKR1E2Q96JD6 320 aa3.45□□□□□ -1.86
VPS29-202ENST00000447578 DNAJC1Q96KC8 554 aaKnown RBP3.45□□□□□ -1.86
VPS29-202ENST00000447578 TNFRSF13CQ96RJ3 184 aa3.45□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms