RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 NAAAQ02083 359 aa18.89■□□□□ 0.61
CCDC28B-201ENST00000373602 POU3F1Q03052 451 aaPredicted RBP18.89■□□□□ 0.61
CCDC28B-201ENST00000373602 KLF10Q13118 480 aa18.89■□□□□ 0.61
CCDC28B-201ENST00000373602 PHYHD1Q5SRE7 291 aa18.89■□□□□ 0.61
CCDC28B-201ENST00000373602 CGB2Q6NT52 195 aa18.89■□□□□ 0.61
CCDC28B-201ENST00000373602 WDR88Q6ZMY6 472 aa18.89■□□□□ 0.61
CCDC28B-201ENST00000373602 CALHM3Q86XJ0 350 aa18.89■□□□□ 0.61
CCDC28B-201ENST00000373602 C20orf196Q8IYI0 205 aa18.89■□□□□ 0.61
CCDC28B-201ENST00000373602 OR8J3Q8NGG0 315 aa18.89■□□□□ 0.61
CCDC28B-201ENST00000373602 VANGL1Q8TAA9 524 aaPredicted RBP18.89■□□□□ 0.61
CCDC28B-201ENST00000373602 SLC26A7Q8TE54 656 aa18.89■□□□□ 0.61
CCDC28B-201ENST00000373602 ADAMTS16Q8TE57 1224 aa18.89■□□□□ 0.61
CCDC28B-201ENST00000373602 RASSF5Q8WWW0 418 aa18.89■□□□□ 0.61
CCDC28B-201ENST00000373602 LRRC58Q96CX6 371 aa18.89■□□□□ 0.61
CCDC28B-201ENST00000373602 LRR1Q96L50 414 aa18.89■□□□□ 0.61
CCDC28B-201ENST00000373602 SH3GL1Q99961 368 aa18.89■□□□□ 0.61
CCDC28B-201ENST00000373602 KCNS3Q9BQ31 491 aa18.89■□□□□ 0.61
CCDC28B-201ENST00000373602 PCDHAC1Q9H158 963 aa18.89■□□□□ 0.61
CCDC28B-201ENST00000373602 NPPAP01160 153 aa18.88■□□□□ 0.61
CCDC28B-201ENST00000373602 CRYAAP02489 173 aa18.88■□□□□ 0.61
CCDC28B-201ENST00000373602 CECR9P0C854 216 aa18.88■□□□□ 0.61
CCDC28B-201ENST00000373602 CBR1P16152 277 aa18.88■□□□□ 0.61
CCDC28B-201ENST00000373602 CRYBA2P53672 197 aa18.88■□□□□ 0.61
CCDC28B-201ENST00000373602 DSCR9P59020 149 aa18.88■□□□□ 0.61
CCDC28B-201ENST00000373602 SWI5Q1ZZU3 235 aa18.88■□□□□ 0.61
CCDC28B-201ENST00000373602 MST1LQ2TV78 715 aa18.88■□□□□ 0.61
CCDC28B-201ENST00000373602 RABL3Q5HYI8 236 aa18.88■□□□□ 0.61
CCDC28B-201ENST00000373602 PXKQ7Z7A4 578 aa18.88■□□□□ 0.61
CCDC28B-201ENST00000373602 TSPYL5Q86VY4 417 aaPredicted RBP18.88■□□□□ 0.61
CCDC28B-201ENST00000373602 OR10H5Q8NGA6 315 aa18.88■□□□□ 0.61
CCDC28B-201ENST00000373602 OR5J2Q8NH18 312 aa18.88■□□□□ 0.61
CCDC28B-201ENST00000373602 TXNDC15Q96J42 360 aa18.88■□□□□ 0.61
CCDC28B-201ENST00000373602 RHNO1Q9BSD3 238 aa18.88■□□□□ 0.61
CCDC28B-201ENST00000373602 EMC6Q9BV81 110 aa18.88■□□□□ 0.61
CCDC28B-201ENST00000373602 SAR1AQ9NR31 198 aa18.88■□□□□ 0.61
CCDC28B-201ENST00000373602 ZNF446Q9NWS9 450 aa18.88■□□□□ 0.61
CCDC28B-201ENST00000373602 MED29Q9NX70 200 aa18.88■□□□□ 0.61
CCDC28B-201ENST00000373602 PMF1-BGLAPU3KQ54 211 aa18.88■□□□□ 0.61
CCDC28B-201ENST00000373602 CR1P17927 2039 aa18.88■□□□□ 0.61
CCDC28B-201ENST00000373602 IGHV4-30-2A0A087WSY4 118 aa18.87■□□□□ 0.61
CCDC28B-201ENST00000373602 SLC35F4A4IF30 521 aa18.87■□□□□ 0.61
CCDC28B-201ENST00000373602 TRAPPC13A5PLN9 417 aa18.87■□□□□ 0.61
CCDC28B-201ENST00000373602 BBIP1A8MTZ0 92 aa18.87■□□□□ 0.61
CCDC28B-201ENST00000373602 ZNF99A8MXY4 864 aaPredicted RBP18.87■□□□□ 0.61
CCDC28B-201ENST00000373602 M0R3G1 203 aa18.87■□□□□ 0.61
CCDC28B-201ENST00000373602 MMEL1Q495T6 779 aa18.87■□□□□ 0.61
CCDC28B-201ENST00000373602 CARD17Q5XLA6 110 aa18.87■□□□□ 0.61
CCDC28B-201ENST00000373602 REP15Q6BDI9 236 aa18.87■□□□□ 0.61
CCDC28B-201ENST00000373602 TTC33Q6PID6 262 aaPredicted RBP18.87■□□□□ 0.61
CCDC28B-201ENST00000373602 CCDC36Q8IYA8 594 aa18.87■□□□□ 0.61
CCDC28B-201ENST00000373602 HTRA1Q92743 480 aa18.87■□□□□ 0.61
CCDC28B-201ENST00000373602 FBXO17Q96EF6 278 aa18.87■□□□□ 0.61
CCDC28B-201ENST00000373602 MPP4Q96JB8 637 aa18.87■□□□□ 0.61
CCDC28B-201ENST00000373602 ECSITQ9BQ95 431 aa18.87■□□□□ 0.61
CCDC28B-201ENST00000373602 SEC61A2Q9H9S3 476 aa18.87■□□□□ 0.61
CCDC28B-201ENST00000373602 ZANQ9Y493 2812 aa18.87■□□□□ 0.61
CCDC28B-201ENST00000373602 MRASO14807 208 aa18.86■□□□□ 0.61
CCDC28B-201ENST00000373602 AHCYP23526 432 aa18.86■□□□□ 0.61
CCDC28B-201ENST00000373602 CALCRP30988 508 aa18.86■□□□□ 0.61
CCDC28B-201ENST00000373602 SF3A3Q12874 501 aaKnown RBP eCLIP18.86■□□□□ 0.61
CCDC28B-201ENST00000373602 MAPRE2Q15555 327 aa18.86■□□□□ 0.61
CCDC28B-201ENST00000373602 ZNF74Q16587 644 aa18.86■□□□□ 0.61
CCDC28B-201ENST00000373602 CLEC2AQ6UVW9 174 aa18.86■□□□□ 0.61
CCDC28B-201ENST00000373602 WDFY1Q8IWB7 410 aa18.86■□□□□ 0.61
CCDC28B-201ENST00000373602 ZNF426Q9BUY5 554 aa18.86■□□□□ 0.61
CCDC28B-201ENST00000373602 B3GAT2Q9NPZ5 323 aa18.86■□□□□ 0.61
CCDC28B-201ENST00000373602 CA10Q9NS85 328 aa18.86■□□□□ 0.61
CCDC28B-201ENST00000373602 SLC7A7Q9UM01 511 aa18.86■□□□□ 0.61
CCDC28B-201ENST00000373602 ZNF503-AS2A6NEH8 195 aa18.85■□□□□ 0.61
CCDC28B-201ENST00000373602 ZNF726A6NNF4 738 aa18.85■□□□□ 0.61
CCDC28B-201ENST00000373602 CH25HO95992 272 aa18.85■□□□□ 0.61
CCDC28B-201ENST00000373602 VIMP08670 466 aaKnown RBP18.85■□□□□ 0.61
CCDC28B-201ENST00000373602 CELA3BP08861 270 aa18.85■□□□□ 0.61
CCDC28B-201ENST00000373602 ADORA3P0DMS8 318 aa18.85■□□□□ 0.61
CCDC28B-201ENST00000373602 ARR3P36575 388 aa18.85■□□□□ 0.61
CCDC28B-201ENST00000373602 EFNA4P52798 201 aa18.85■□□□□ 0.61
CCDC28B-201ENST00000373602 CAMK2DQ13557 499 aa18.85■□□□□ 0.61
CCDC28B-201ENST00000373602 SNX32Q86XE0 403 aa18.85■□□□□ 0.61
CCDC28B-201ENST00000373602 OR4F15Q8NGB8 312 aa18.85■□□□□ 0.61
CCDC28B-201ENST00000373602 SLC19A3Q9BZV2 496 aa18.85■□□□□ 0.61
CCDC28B-201ENST00000373602 USP22Q9UPT9 525 aa18.85■□□□□ 0.61
CCDC28B-201ENST00000373602 ARFGEF3Q5TH69 2177 aa18.85■□□□□ 0.61
CCDC28B-201ENST00000373602 ABCA2Q9BZC7 2435 aa18.84■□□□□ 0.61
CCDC28B-201ENST00000373602 A0A096LNT2 108 aa18.84■□□□□ 0.61
CCDC28B-201ENST00000373602 C11orf98E9PRG8 122 aa18.84■□□□□ 0.61
CCDC28B-201ENST00000373602 SERPINI2O75830 405 aa18.84■□□□□ 0.61
CCDC28B-201ENST00000373602 SEC14L2O76054 403 aa18.84■□□□□ 0.61
CCDC28B-201ENST00000373602 PDE5AO76074 875 aa18.84■□□□□ 0.61
CCDC28B-201ENST00000373602 OR6A2O95222 327 aa18.84■□□□□ 0.61
CCDC28B-201ENST00000373602 SERPINF1P36955 418 aa18.84■□□□□ 0.61
CCDC28B-201ENST00000373602 IDH3GP51553 393 aaPredicted RBP18.84■□□□□ 0.61
CCDC28B-201ENST00000373602 ZP4Q12836 540 aa18.84■□□□□ 0.61
CCDC28B-201ENST00000373602 ERICH5Q6P6B1 374 aa18.84■□□□□ 0.61
CCDC28B-201ENST00000373602 ZNF627Q7L945 461 aa18.84■□□□□ 0.61
CCDC28B-201ENST00000373602 MDP1Q86V88 176 aa18.84■□□□□ 0.61
CCDC28B-201ENST00000373602 MYPOPQ86VE0 399 aaPredicted RBP18.84■□□□□ 0.61
CCDC28B-201ENST00000373602 ZNF525Q8N782 197 aa18.84■□□□□ 0.61
CCDC28B-201ENST00000373602 NUP37Q8NFH4 326 aa18.84■□□□□ 0.61
CCDC28B-201ENST00000373602 OR6N1Q8NGY5 312 aa18.84■□□□□ 0.61
CCDC28B-201ENST00000373602 PROX1Q92786 737 aa18.84■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms