RNA–Protein interactions for RNA: ENST00000284770.9

PDLIM3-202, Transcript of PDZ and LIM domain 3, humanhuman

TSL 1 (best) BASIC

Gene PDLIM3, Length 1,766 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-202ENST00000284770 SIGLEC11Q96RL6 698 aa16.9■□□□□ 0.3
PDLIM3-202ENST00000284770 UCN2Q96RP3 112 aa16.9■□□□□ 0.3
PDLIM3-202ENST00000284770 AMBNQ9NP70 447 aa16.9■□□□□ 0.3
PDLIM3-202ENST00000284770 CMC2Q9NRP2 79 aa16.9■□□□□ 0.3
PDLIM3-202ENST00000284770 DNAJC27Q9NZQ0 273 aa16.9■□□□□ 0.3
PDLIM3-202ENST00000284770 GRHPRQ9UBQ7 328 aa16.9■□□□□ 0.3
PDLIM3-202ENST00000284770 RASD1Q9Y272 281 aa16.9■□□□□ 0.3
PDLIM3-202ENST00000284770 GPR52Q9Y2T5 361 aa16.9■□□□□ 0.3
PDLIM3-202ENST00000284770 ZNF407Q9C0G0 2248 aa16.9■□□□□ 0.3
PDLIM3-202ENST00000284770 A0A1W2PRG6 482 aa16.89■□□□□ 0.3
PDLIM3-202ENST00000284770 DPPA5A6NC42 116 aa16.89■□□□□ 0.3
PDLIM3-202ENST00000284770 A6NHS1 94 aa16.89■□□□□ 0.3
PDLIM3-202ENST00000284770 SMAD9O15198 467 aaKnown RBP16.89■□□□□ 0.3
PDLIM3-202ENST00000284770 RAMP1O60894 148 aa16.89■□□□□ 0.3
PDLIM3-202ENST00000284770 SERPINI2O75830 405 aa16.89■□□□□ 0.3
PDLIM3-202ENST00000284770 VAMP5O95183 116 aa16.89■□□□□ 0.3
PDLIM3-202ENST00000284770 SLC2A10O95528 541 aa16.89■□□□□ 0.3
PDLIM3-202ENST00000284770 TXNDC12O95881 172 aa16.89■□□□□ 0.3
PDLIM3-202ENST00000284770 HLA-DOBP13765 273 aa16.89■□□□□ 0.3
PDLIM3-202ENST00000284770 SDHAP31040 664 aa16.89■□□□□ 0.3
PDLIM3-202ENST00000284770 EMC4Q5J8M3 183 aa16.89■□□□□ 0.3
PDLIM3-202ENST00000284770 ZNF324BQ6AW86 544 aaPredicted RBP16.89■□□□□ 0.3
PDLIM3-202ENST00000284770 GPR139Q6DWJ6 353 aa16.89■□□□□ 0.3
PDLIM3-202ENST00000284770 IPCEF1Q8WWN9 437 aaPredicted RBP16.89■□□□□ 0.3
PDLIM3-202ENST00000284770 PLEKHA8Q96JA3 519 aa16.89■□□□□ 0.3
PDLIM3-202ENST00000284770 LRR1Q96L50 414 aa16.89■□□□□ 0.3
PDLIM3-202ENST00000284770 GPR137Q96N19 417 aa16.89■□□□□ 0.3
PDLIM3-202ENST00000284770 TSPAN32Q96QS1 320 aa16.89■□□□□ 0.3
PDLIM3-202ENST00000284770 TXNIPQ9H3M7 391 aa16.89■□□□□ 0.3
PDLIM3-202ENST00000284770 ZNF346Q9UL40 294 aaKnown RBP16.89■□□□□ 0.3
PDLIM3-202ENST00000284770 NOX1Q9Y5S8 564 aa16.89■□□□□ 0.3
PDLIM3-202ENST00000284770 BOD1L1Q8NFC6 3051 aa16.89■□□□□ 0.29
PDLIM3-202ENST00000284770 IGHV3-15A0A0B4J1V0 119 aa16.89■□□□□ 0.29
PDLIM3-202ENST00000284770 NPIPB13A6NJU9 1138 aa16.89■□□□□ 0.29
PDLIM3-202ENST00000284770 CLCA1A8K7I4 914 aa16.89■□□□□ 0.29
PDLIM3-202ENST00000284770 NPIPB4C9JG80 1138 aa16.89■□□□□ 0.29
PDLIM3-202ENST00000284770 PLGP00747 810 aaPredicted RBP16.89■□□□□ 0.29
PDLIM3-202ENST00000284770 IGHMP01871 453 aa16.89■□□□□ 0.29
PDLIM3-202ENST00000284770 HIST1H1CP16403 213 aaKnown RBP16.89■□□□□ 0.29
PDLIM3-202ENST00000284770 SLC15A1P46059 708 aa16.89■□□□□ 0.29
PDLIM3-202ENST00000284770 RPL5P46777 297 aaKnown RBP16.89■□□□□ 0.29
PDLIM3-202ENST00000284770 NR1H2P55055 460 aa16.89■□□□□ 0.29
PDLIM3-202ENST00000284770 HSF1Q00613 529 aa16.89■□□□□ 0.29
PDLIM3-202ENST00000284770 ACKR1Q16570 336 aa16.89■□□□□ 0.29
PDLIM3-202ENST00000284770 KRTCAP3Q53RY4 240 aa16.89■□□□□ 0.29
PDLIM3-202ENST00000284770 MEDAGQ5VYS4 303 aa16.89■□□□□ 0.29
PDLIM3-202ENST00000284770 GPAT4Q86UL3 456 aa16.89■□□□□ 0.29
PDLIM3-202ENST00000284770 CISD2Q8N5K1 135 aaKnown RBP16.89■□□□□ 0.29
PDLIM3-202ENST00000284770 GGHQ92820 318 aa16.89■□□□□ 0.29
PDLIM3-202ENST00000284770 SARAFQ96BY9 339 aa16.89■□□□□ 0.29
PDLIM3-202ENST00000284770 Q96M85 177 aa16.89■□□□□ 0.29
PDLIM3-202ENST00000284770 PRDM14Q9GZV8 571 aa16.89■□□□□ 0.29
PDLIM3-202ENST00000284770 ERVK-18Q9QC07 812 aa16.89■□□□□ 0.29
PDLIM3-202ENST00000284770 DSPP15924 2871 aaKnown RBP16.89■□□□□ 0.29
PDLIM3-202ENST00000284770 TEX13CA0A0J9YWL9 993 aa16.88■□□□□ 0.29
PDLIM3-202ENST00000284770 A0A1B0GTH9 108 aa16.88■□□□□ 0.29
PDLIM3-202ENST00000284770 RIIAD1A6NNX1 92 aa16.88■□□□□ 0.29
PDLIM3-202ENST00000284770 ERVH48-1M5A8F1 160 aa16.88■□□□□ 0.29
PDLIM3-202ENST00000284770 IFNGP01579 166 aa16.88■□□□□ 0.29
PDLIM3-202ENST00000284770 RPL27P61353 136 aaKnown RBP16.88■□□□□ 0.29
PDLIM3-202ENST00000284770 POU3F1Q03052 451 aaPredicted RBP16.88■□□□□ 0.29
PDLIM3-202ENST00000284770 KLRB1Q12918 225 aa16.88■□□□□ 0.29
PDLIM3-202ENST00000284770 C3AR1Q16581 482 aa16.88■□□□□ 0.29
PDLIM3-202ENST00000284770 NHLRC1Q6VVB1 395 aa16.88■□□□□ 0.29
PDLIM3-202ENST00000284770 AHSA2Q719I0 299 aa16.88■□□□□ 0.29
PDLIM3-202ENST00000284770 UEVLDQ8IX04 471 aa16.88■□□□□ 0.29
PDLIM3-202ENST00000284770 SPARTQ8N0X7 666 aa16.88■□□□□ 0.29
PDLIM3-202ENST00000284770 LSM14AQ8ND56 463 aaKnown RBP16.88■□□□□ 0.29
PDLIM3-202ENST00000284770 OR4K13Q8NH42 304 aa16.88■□□□□ 0.29
PDLIM3-202ENST00000284770 RASD2Q96D21 266 aa16.88■□□□□ 0.29
PDLIM3-202ENST00000284770 ZNF582Q96NG8 517 aaPredicted RBP16.88■□□□□ 0.29
PDLIM3-202ENST00000284770 CCNB1IP1Q9NPC3 277 aa16.88■□□□□ 0.29
PDLIM3-202ENST00000284770 KLHL21Q9UJP4 597 aa16.88■□□□□ 0.29
PDLIM3-202ENST00000284770 CAMK2AQ9UQM7 478 aa16.88■□□□□ 0.29
PDLIM3-202ENST00000284770 PIEZO2Q9H5I5 2752 aa16.87■□□□□ 0.29
PDLIM3-202ENST00000284770 ACACBO00763 2458 aa16.87■□□□□ 0.29
PDLIM3-202ENST00000284770 OR14I1A6ND48 311 aa16.87■□□□□ 0.29
PDLIM3-202ENST00000284770 KDM4EB2RXH2 506 aaPredicted RBP16.87■□□□□ 0.29
PDLIM3-202ENST00000284770 IFNGR1P15260 489 aa16.87■□□□□ 0.29
PDLIM3-202ENST00000284770 ZNF3P17036 446 aa16.87■□□□□ 0.29
PDLIM3-202ENST00000284770 ALDH3B2P48448 385 aa16.87■□□□□ 0.29
PDLIM3-202ENST00000284770 DAP3P51398 398 aaKnown RBP16.87■□□□□ 0.29
PDLIM3-202ENST00000284770 POU4F3Q15319 338 aa16.87■□□□□ 0.29
PDLIM3-202ENST00000284770 AADACL4Q5VUY2 407 aa16.87■□□□□ 0.29
PDLIM3-202ENST00000284770 SLC35D2Q76EJ3 337 aa16.87■□□□□ 0.29
PDLIM3-202ENST00000284770 CHMP1BQ7LBR1 199 aa16.87■□□□□ 0.29
PDLIM3-202ENST00000284770 PM20D2Q8IYS1 436 aa16.87■□□□□ 0.29
PDLIM3-202ENST00000284770 ARIH2OSQ8N7S6 290 aa16.87■□□□□ 0.29
PDLIM3-202ENST00000284770 OR52E2Q8NGJ4 325 aa16.87■□□□□ 0.29
PDLIM3-202ENST00000284770 FAR1Q8WVX9 515 aa16.87■□□□□ 0.29
PDLIM3-202ENST00000284770 ROBO4Q8WZ75 1007 aa16.87■□□□□ 0.29
PDLIM3-202ENST00000284770 SF3B5Q9BWJ5 86 aaKnown RBP16.87■□□□□ 0.29
PDLIM3-202ENST00000284770 FN3KQ9H479 309 aa16.87■□□□□ 0.29
PDLIM3-202ENST00000284770 HINT3Q9NQE9 182 aaKnown RBP16.87■□□□□ 0.29
PDLIM3-202ENST00000284770 KLHL13Q9P2N7 655 aa16.87■□□□□ 0.29
PDLIM3-202ENST00000284770 DNAJC13O75165 2243 aa16.87■□□□□ 0.29
PDLIM3-202ENST00000284770 NPIPA2E9PIF3 369 aa16.87■□□□□ 0.29
PDLIM3-202ENST00000284770 NPIPA3F8WFD2 350 aa16.87■□□□□ 0.29
PDLIM3-202ENST00000284770 MRPS14O60783 128 aaKnown RBP16.87■□□□□ 0.29
PDLIM3-202ENST00000284770 ZNF43P17038 809 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 75.8 ms