RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 LOC105371242A0A075B767 164 aa7.43□□□□□ -1.22
SHKBP1-220ENST00000599716 LRRN3E7EW58 273 aa7.43□□□□□ -1.22
SHKBP1-220ENST00000599716 M0R082 166 aa7.43□□□□□ -1.22
SHKBP1-220ENST00000599716 FAAHO00519 579 aa7.43□□□□□ -1.22
SHKBP1-220ENST00000599716 NPIPB7O75200 414 aa7.43□□□□□ -1.22
SHKBP1-220ENST00000599716 SERPINI2O75830 405 aa7.43□□□□□ -1.22
SHKBP1-220ENST00000599716 ZNF432O94892 652 aa7.43□□□□□ -1.22
SHKBP1-220ENST00000599716 AHSA1O95433 338 aa7.43□□□□□ -1.22
SHKBP1-220ENST00000599716 HPRP00739 348 aa7.43□□□□□ -1.22
SHKBP1-220ENST00000599716 SERPINE1P05121 402 aa7.43□□□□□ -1.22
SHKBP1-220ENST00000599716 NUDT17P0C025 328 aa7.43□□□□□ -1.22
SHKBP1-220ENST00000599716 TFPTP0C1Z6 253 aa7.43□□□□□ -1.22
SHKBP1-220ENST00000599716 NAT2P11245 290 aa7.43□□□□□ -1.22
SHKBP1-220ENST00000599716 CD79AP11912 226 aa7.43□□□□□ -1.22
SHKBP1-220ENST00000599716 CBR1P16152 277 aa7.43□□□□□ -1.22
SHKBP1-220ENST00000599716 LBPP18428 481 aa7.43□□□□□ -1.22
SHKBP1-220ENST00000599716 ADRA2CP18825 462 aa7.43□□□□□ -1.22
SHKBP1-220ENST00000599716 EPHA3P29320 983 aa7.43□□□□□ -1.22
SHKBP1-220ENST00000599716 SERPINB5P36952 375 aa7.43□□□□□ -1.22
SHKBP1-220ENST00000599716 CRATP43155 626 aa7.43□□□□□ -1.22
SHKBP1-220ENST00000599716 SLC1A6P48664 564 aa7.43□□□□□ -1.22
SHKBP1-220ENST00000599716 VSNL1P62760 191 aa7.43□□□□□ -1.22
SHKBP1-220ENST00000599716 MPP2Q14168 576 aa7.43□□□□□ -1.22
SHKBP1-220ENST00000599716 FAHD2BQ6P2I3 314 aaPredicted RBP7.43□□□□□ -1.22
SHKBP1-220ENST00000599716 LRRC17Q8N6Y2 441 aa7.43□□□□□ -1.22
SHKBP1-220ENST00000599716 VPS37AQ8NEZ2 397 aa7.43□□□□□ -1.22
SHKBP1-220ENST00000599716 ZNF417Q8TAU3 575 aa7.43□□□□□ -1.22
SHKBP1-220ENST00000599716 SLC38A5Q8WUX1 472 aa7.43□□□□□ -1.22
SHKBP1-220ENST00000599716 NEU4Q8WWR8 484 aaPredicted RBP7.43□□□□□ -1.22
SHKBP1-220ENST00000599716 GTF3AQ92664 365 aaKnown RBP7.43□□□□□ -1.22
SHKBP1-220ENST00000599716 MAL2Q969L2 176 aa7.43□□□□□ -1.22
SHKBP1-220ENST00000599716 TAAR8Q969N4 342 aa7.43□□□□□ -1.22
SHKBP1-220ENST00000599716 FAHD2AQ96GK7 314 aa7.43□□□□□ -1.22
SHKBP1-220ENST00000599716 TMEM19Q96HH6 336 aa7.43□□□□□ -1.22
SHKBP1-220ENST00000599716 BOD1Q96IK1 185 aa7.43□□□□□ -1.22
SHKBP1-220ENST00000599716 LRRC37BQ96QE4 947 aa7.43□□□□□ -1.22
SHKBP1-220ENST00000599716 TSPAN32Q96QS1 320 aa7.43□□□□□ -1.22
SHKBP1-220ENST00000599716 OR2M2Q96R28 347 aa7.43□□□□□ -1.22
SHKBP1-220ENST00000599716 ZNF587Q96SQ5 575 aaPredicted RBP7.43□□□□□ -1.22
SHKBP1-220ENST00000599716 OR51B6Q9H340 312 aa7.43□□□□□ -1.22
SHKBP1-220ENST00000599716 ZNF442Q9H7R0 627 aa7.43□□□□□ -1.22
SHKBP1-220ENST00000599716 PPCSQ9HAB8 311 aa7.43□□□□□ -1.22
SHKBP1-220ENST00000599716 OBP2BQ9NPH6 170 aa7.43□□□□□ -1.22
SHKBP1-220ENST00000599716 BTNL2Q9UIR0 455 aa7.43□□□□□ -1.22
SHKBP1-220ENST00000599716 RASD1Q9Y272 281 aa7.43□□□□□ -1.22
SHKBP1-220ENST00000599716 RAP2CQ9Y3L5 183 aa7.43□□□□□ -1.22
SHKBP1-220ENST00000599716 CMAHPQ9Y471 501 aa7.43□□□□□ -1.22
SHKBP1-220ENST00000599716 IGKV1D-42A0A075B6H8 117 aa7.42□□□□□ -1.22
SHKBP1-220ENST00000599716 B4DSR2 109 aa7.42□□□□□ -1.22
SHKBP1-220ENST00000599716 SDHDO14521 159 aa7.42□□□□□ -1.22
SHKBP1-220ENST00000599716 TRAF3IP2O43734 574 aaPredicted RBP7.42□□□□□ -1.22
SHKBP1-220ENST00000599716 ZNF500O60304 480 aaPredicted RBP7.42□□□□□ -1.22
SHKBP1-220ENST00000599716 CDC14BO60729 498 aa7.42□□□□□ -1.22
SHKBP1-220ENST00000599716 SLC43A1O75387 559 aa7.42□□□□□ -1.22
SHKBP1-220ENST00000599716 MYZAPP0CAP1 466 aa7.42□□□□□ -1.22
SHKBP1-220ENST00000599716 UQCRBP14927 111 aa7.42□□□□□ -1.22
SHKBP1-220ENST00000599716 B4GALT1P15291 398 aa7.42□□□□□ -1.22
SHKBP1-220ENST00000599716 ZNF43P17038 809 aa7.42□□□□□ -1.22
SHKBP1-220ENST00000599716 NR4A1P22736 598 aa7.42□□□□□ -1.22
SHKBP1-220ENST00000599716 HTR2AP28223 471 aa7.42□□□□□ -1.22
SHKBP1-220ENST00000599716 GRPRP30550 384 aa7.42□□□□□ -1.22
SHKBP1-220ENST00000599716 MAGEB1P43366 347 aa7.42□□□□□ -1.22
SHKBP1-220ENST00000599716 GPR6P46095 362 aaPredicted RBP7.42□□□□□ -1.22
SHKBP1-220ENST00000599716 COMPP49747 757 aaPredicted RBP7.42□□□□□ -1.22
SHKBP1-220ENST00000599716 RPL14P50914 215 aaKnown RBP7.42□□□□□ -1.22
SHKBP1-220ENST00000599716 CLNS1AP54105 237 aaKnown RBP7.42□□□□□ -1.22
SHKBP1-220ENST00000599716 DVL1P1P54792 670 aaPredicted RBP7.42□□□□□ -1.22
SHKBP1-220ENST00000599716 COPZ1P61923 177 aa7.42□□□□□ -1.22
SHKBP1-220ENST00000599716 CAMK2DQ13557 499 aa7.42□□□□□ -1.22
SHKBP1-220ENST00000599716 C1DQ13901 141 aaKnown RBP7.42□□□□□ -1.22
SHKBP1-220ENST00000599716 GNA13Q14344 377 aa7.42□□□□□ -1.22
SHKBP1-220ENST00000599716 GSTA3Q16772 222 aa7.42□□□□□ -1.22
SHKBP1-220ENST00000599716 SMU1Q2TAY7 513 aa7.42□□□□□ -1.22
SHKBP1-220ENST00000599716 LIN52Q52LA3 116 aa7.42□□□□□ -1.22
SHKBP1-220ENST00000599716 AVPI1Q5T686 147 aa7.42□□□□□ -1.22
SHKBP1-220ENST00000599716 PEG10Q86TG7 708 aaKnown RBP7.42□□□□□ -1.22
SHKBP1-220ENST00000599716 GLCCI1Q86VQ1 547 aa7.42□□□□□ -1.22
SHKBP1-220ENST00000599716 CNPY4Q8N129 248 aa7.42□□□□□ -1.22
SHKBP1-220ENST00000599716 TMEM123Q8N131 208 aa7.42□□□□□ -1.22
SHKBP1-220ENST00000599716 GPR137CQ8N3F9 429 aa7.42□□□□□ -1.22
SHKBP1-220ENST00000599716 C3orf56Q8N813 242 aa7.42□□□□□ -1.22
SHKBP1-220ENST00000599716 FGFBP3Q8TAT2 258 aa7.42□□□□□ -1.22
SHKBP1-220ENST00000599716 RNF217Q8TC41 542 aa7.42□□□□□ -1.22
SHKBP1-220ENST00000599716 MAGEE2Q8TD90 523 aaPredicted RBP7.42□□□□□ -1.22
SHKBP1-220ENST00000599716 OIT3Q8WWZ8 545 aa7.42□□□□□ -1.22
SHKBP1-220ENST00000599716 C22orf15Q8WYQ4 148 aa7.42□□□□□ -1.22
SHKBP1-220ENST00000599716 TAF15Q92804 592 aaKnown RBP eCLIP7.42□□□□□ -1.22
SHKBP1-220ENST00000599716 HPS1Q92902 700 aa7.42□□□□□ -1.22
SHKBP1-220ENST00000599716 MRPL24Q96A35 216 aaKnown RBP7.42□□□□□ -1.22
SHKBP1-220ENST00000599716 TMEM186Q96B77 213 aa7.42□□□□□ -1.22
SHKBP1-220ENST00000599716 TXNDC15Q96J42 360 aa7.42□□□□□ -1.22
SHKBP1-220ENST00000599716 ANKRD27Q96NW4 1050 aa7.42□□□□□ -1.22
SHKBP1-220ENST00000599716 LINC00470Q9BZP3 86 aa7.42□□□□□ -1.22
SHKBP1-220ENST00000599716 ZNF275Q9NSD4 429 aaPredicted RBP7.42□□□□□ -1.22
SHKBP1-220ENST00000599716 AIG1Q9NVV5 245 aa7.42□□□□□ -1.22
SHKBP1-220ENST00000599716 MED29Q9NX70 200 aa7.42□□□□□ -1.22
SHKBP1-220ENST00000599716 ZNF224Q9NZL3 707 aa7.42□□□□□ -1.22
SHKBP1-220ENST00000599716 P2RX2Q9UBL9 471 aa7.42□□□□□ -1.22
SHKBP1-220ENST00000599716 REV1Q9UBZ9 1251 aa7.42□□□□□ -1.22
SHKBP1-220ENST00000599716 DUSP13Q9UII6 198 aa7.42□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms