RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 MTPNP58546 118 aa17.83■□□□□ 0.44
SHMT1-209ENST00000582653 UBE2NP61088 152 aaKnown RBP17.83■□□□□ 0.44
SHMT1-209ENST00000582653 NCALDP61601 193 aa17.83■□□□□ 0.44
SHMT1-209ENST00000582653 IL1RL1Q01638 556 aa17.83■□□□□ 0.44
SHMT1-209ENST00000582653 TMEM249Q2WGJ8 235 aa17.83■□□□□ 0.44
SHMT1-209ENST00000582653 H1FNTQ75WM6 255 aaPredicted RBP17.83■□□□□ 0.44
SHMT1-209ENST00000582653 DHDDSQ86SQ9 333 aa17.83■□□□□ 0.44
SHMT1-209ENST00000582653 ZNF525Q8N782 197 aa17.83■□□□□ 0.44
SHMT1-209ENST00000582653 FAM168AQ92567 244 aa17.83■□□□□ 0.44
SHMT1-209ENST00000582653 ZNF837Q96EG3 531 aaPredicted RBP17.83■□□□□ 0.44
SHMT1-209ENST00000582653 ANKRD27Q96NW4 1050 aa17.83■□□□□ 0.44
SHMT1-209ENST00000582653 NELFAQ9H3P2 528 aa17.83■□□□□ 0.44
SHMT1-209ENST00000582653 TMEM27Q9HBJ8 222 aa17.83■□□□□ 0.44
SHMT1-209ENST00000582653 TESQ9UGI8 421 aaKnown RBP17.83■□□□□ 0.44
SHMT1-209ENST00000582653 SLC13A4Q9UKG4 626 aa17.83■□□□□ 0.44
SHMT1-209ENST00000582653 A0A087WUJ7 227 aa17.82■□□□□ 0.44
SHMT1-209ENST00000582653 A0A0B4J2E0 115 aa17.82■□□□□ 0.44
SHMT1-209ENST00000582653 A0A1B0GX12 115 aa17.82■□□□□ 0.44
SHMT1-209ENST00000582653 MS4A18H0YCH9 400 aa17.82■□□□□ 0.44
SHMT1-209ENST00000582653 EDF1O60869 148 aaKnown RBP17.82■□□□□ 0.44
SHMT1-209ENST00000582653 SLC43A1O75387 559 aa17.82■□□□□ 0.44
SHMT1-209ENST00000582653 HPRP00739 348 aa17.82■□□□□ 0.44
SHMT1-209ENST00000582653 OPN1SWP03999 348 aa17.82■□□□□ 0.44
SHMT1-209ENST00000582653 HLA-DOBP13765 273 aa17.82■□□□□ 0.44
SHMT1-209ENST00000582653 HOXB1P14653 301 aaPredicted RBP17.82■□□□□ 0.44
SHMT1-209ENST00000582653 CDH12P55289 794 aa17.82■□□□□ 0.44
SHMT1-209ENST00000582653 ARF1P84077 181 aaKnown RBP17.82■□□□□ 0.44
SHMT1-209ENST00000582653 VLDLRP98155 873 aa17.82■□□□□ 0.44
SHMT1-209ENST00000582653 MS4A18Q3C1V0 323 aa17.82■□□□□ 0.44
SHMT1-209ENST00000582653 FAM91A1Q658Y4 838 aa17.82■□□□□ 0.44
SHMT1-209ENST00000582653 ANKRD16Q6P6B7 361 aa17.82■□□□□ 0.44
SHMT1-209ENST00000582653 C5orf46Q6UWT4 87 aa17.82■□□□□ 0.44
SHMT1-209ENST00000582653 NET1Q7Z628 596 aaPredicted RBP17.82■□□□□ 0.44
SHMT1-209ENST00000582653 MAGEE2Q8TD90 523 aaPredicted RBP17.82■□□□□ 0.44
SHMT1-209ENST00000582653 C10orf105Q8TEF2 133 aa17.82■□□□□ 0.44
SHMT1-209ENST00000582653 ZNF317Q96PQ6 595 aaPredicted RBP17.82■□□□□ 0.44
SHMT1-209ENST00000582653 SLC38A2Q96QD8 506 aa17.82■□□□□ 0.44
SHMT1-209ENST00000582653 RCE1Q9Y256 329 aa17.82■□□□□ 0.44
SHMT1-209ENST00000582653 ANGPT4Q9Y264 503 aa17.82■□□□□ 0.44
SHMT1-209ENST00000582653 PLCE1Q9P212 2302 aa17.82■□□□□ 0.44
SHMT1-209ENST00000582653 LRRN3E7EW58 273 aa17.81■□□□□ 0.44
SHMT1-209ENST00000582653 M0R3H8 397 aa17.81■□□□□ 0.44
SHMT1-209ENST00000582653 ANGPT2O15123 496 aa17.81■□□□□ 0.44
SHMT1-209ENST00000582653 BGLAPP02818 100 aa17.81■□□□□ 0.44
SHMT1-209ENST00000582653 PCBP3P57721 371 aaKnown RBP17.81■□□□□ 0.44
SHMT1-209ENST00000582653 DUSP7Q16829 419 aa17.81■□□□□ 0.44
SHMT1-209ENST00000582653 CYP51A1Q16850 503 aa17.81■□□□□ 0.44
SHMT1-209ENST00000582653 CHRFAM7AQ494W8 412 aa17.81■□□□□ 0.44
SHMT1-209ENST00000582653 PHYHD1Q5SRE7 291 aa17.81■□□□□ 0.44
SHMT1-209ENST00000582653 C6orf52Q5T4I8 152 aa17.81■□□□□ 0.44
SHMT1-209ENST00000582653 GPR137CQ8N3F9 429 aa17.81■□□□□ 0.44
SHMT1-209ENST00000582653 DPP10Q8N608 796 aa17.81■□□□□ 0.44
SHMT1-209ENST00000582653 C11orf65Q8NCR3 313 aa17.81■□□□□ 0.44
SHMT1-209ENST00000582653 NANOS1Q8WY41 292 aaKnown RBP17.81■□□□□ 0.44
SHMT1-209ENST00000582653 FBXO17Q96EF6 278 aa17.81■□□□□ 0.44
SHMT1-209ENST00000582653 MOGAT1Q96PD6 335 aa17.81■□□□□ 0.44
SHMT1-209ENST00000582653 OR2M2Q96R28 347 aa17.81■□□□□ 0.44
SHMT1-209ENST00000582653 CGREF1Q99674 301 aa17.81■□□□□ 0.44
SHMT1-209ENST00000582653 VIPAS39Q9H9C1 493 aa17.81■□□□□ 0.44
SHMT1-209ENST00000582653 SEC61A2Q9H9S3 476 aa17.81■□□□□ 0.44
SHMT1-209ENST00000582653 GPR35Q9HC97 309 aa17.81■□□□□ 0.44
SHMT1-209ENST00000582653 SELENONQ9NZV5 590 aa17.81■□□□□ 0.44
SHMT1-209ENST00000582653 TRIM33Q9UPN9 1127 aa17.81■□□□□ 0.44
SHMT1-209ENST00000582653 SONP18583 2426 aaKnown RBP17.8■□□□□ 0.44
SHMT1-209ENST00000582653 ARPC4-TTLL3A0A0A6YYG9 625 aa17.8■□□□□ 0.44
SHMT1-209ENST00000582653 A0A0G2JND7 137 aa17.8■□□□□ 0.44
SHMT1-209ENST00000582653 RPL36A-HNRNPH2H7BZ11 118 aa17.8■□□□□ 0.44
SHMT1-209ENST00000582653 M0QX08 132 aa17.8■□□□□ 0.44
SHMT1-209ENST00000582653 TRAF3IP2O43734 574 aaPredicted RBP17.8■□□□□ 0.44
SHMT1-209ENST00000582653 LY6HO94772 140 aa17.8■□□□□ 0.44
SHMT1-209ENST00000582653 CSF3P09919 207 aa17.8■□□□□ 0.44
SHMT1-209ENST00000582653 NQO1P15559 274 aaKnown RBP17.8■□□□□ 0.44
SHMT1-209ENST00000582653 H2AFXP16104 143 aaPredicted RBP17.8■□□□□ 0.44
SHMT1-209ENST00000582653 NFYCQ13952 458 aa17.8■□□□□ 0.44
SHMT1-209ENST00000582653 CEACAM16Q2WEN9 425 aa17.8■□□□□ 0.44
SHMT1-209ENST00000582653 C3orf36Q3SXR2 165 aa17.8■□□□□ 0.44
SHMT1-209ENST00000582653 CARD17Q5XLA6 110 aa17.8■□□□□ 0.44
SHMT1-209ENST00000582653 WDFY1Q8IWB7 410 aa17.8■□□□□ 0.44
SHMT1-209ENST00000582653 FAM169BQ8N8A8 192 aa17.8■□□□□ 0.44
SHMT1-209ENST00000582653 ANKK1Q8NFD2 765 aa17.8■□□□□ 0.44
SHMT1-209ENST00000582653 BHLHE22Q8NFJ8 381 aaPredicted RBP17.8■□□□□ 0.44
SHMT1-209ENST00000582653 GPR32P1Q8NGA4 272 aa17.8■□□□□ 0.44
SHMT1-209ENST00000582653 STON2Q8WXE9 905 aa17.8■□□□□ 0.44
SHMT1-209ENST00000582653 SLC41A3Q96GZ6 507 aa17.8■□□□□ 0.44
SHMT1-209ENST00000582653 MCHR1Q99705 422 aa17.8■□□□□ 0.44
SHMT1-209ENST00000582653 EMC6Q9BV81 110 aa17.8■□□□□ 0.44
SHMT1-209ENST00000582653 KATNB1Q9BVA0 655 aa17.8■□□□□ 0.44
SHMT1-209ENST00000582653 CRLF2Q9HC73 371 aa17.8■□□□□ 0.44
SHMT1-209ENST00000582653 MOV10Q9HCE1 1003 aaKnown RBP17.8■□□□□ 0.44
SHMT1-209ENST00000582653 CRNNQ9UBG3 495 aaPredicted RBP17.8■□□□□ 0.44
SHMT1-209ENST00000582653 LOC102725191A0A1B0GVB3 256 aa17.79■□□□□ 0.44
SHMT1-209ENST00000582653 M0R3G1 203 aa17.79■□□□□ 0.44
SHMT1-209ENST00000582653 SASH3O75995 380 aa17.79■□□□□ 0.44
SHMT1-209ENST00000582653 SEC14L2O76054 403 aa17.79■□□□□ 0.44
SHMT1-209ENST00000582653 CRYAAP02489 173 aa17.79■□□□□ 0.44
SHMT1-209ENST00000582653 CELA3BP08861 270 aa17.79■□□□□ 0.44
SHMT1-209ENST00000582653 CECR9P0C854 216 aa17.79■□□□□ 0.44
SHMT1-209ENST00000582653 SERPINF1P36955 418 aa17.79■□□□□ 0.44
SHMT1-209ENST00000582653 RBBP4Q09028 425 aa17.79■□□□□ 0.44
SHMT1-209ENST00000582653 CYB5R2Q6BCY4 276 aa17.79■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms