RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 BCL2L10Q9HD36 194 aa18.25■□□□□ 0.51
VPS53-216ENST00000574029 SEC14L4Q9UDX3 406 aa18.25■□□□□ 0.51
VPS53-216ENST00000574029 TMEM129A0AVI4 362 aa18.24■□□□□ 0.51
VPS53-216ENST00000574029 LRP5LA4QPB2 252 aa18.24■□□□□ 0.51
VPS53-216ENST00000574029 ZNF503-AS2A6NEH8 195 aa18.24■□□□□ 0.51
VPS53-216ENST00000574029 VSTM5A8MXK1 200 aa18.24■□□□□ 0.51
VPS53-216ENST00000574029 SLC43A1O75387 559 aa18.24■□□□□ 0.51
VPS53-216ENST00000574029 TACSTD2P09758 323 aa18.24■□□□□ 0.51
VPS53-216ENST00000574029 DAOP14920 347 aa18.24■□□□□ 0.51
VPS53-216ENST00000574029 GTF2E2P29084 291 aaKnown RBP18.24■□□□□ 0.51
VPS53-216ENST00000574029 ARR3P36575 388 aa18.24■□□□□ 0.51
VPS53-216ENST00000574029 CR1LQ2VPA4 569 aa18.24■□□□□ 0.51
VPS53-216ENST00000574029 ITCHQ96J02 903 aa18.24■□□□□ 0.51
VPS53-216ENST00000574029 ANKRD27Q96NW4 1050 aa18.24■□□□□ 0.51
VPS53-216ENST00000574029 C12orf10Q9HB07 376 aa18.24■□□□□ 0.51
VPS53-216ENST00000574029 SDR39U1Q9NRG7 319 aaPredicted RBP18.24■□□□□ 0.51
VPS53-216ENST00000574029 ZIM2Q9NZV7 527 aa18.24■□□□□ 0.51
VPS53-216ENST00000574029 IGHV2OR16-5A0A0B4J2B6 119 aa18.23■□□□□ 0.51
VPS53-216ENST00000574029 TMEM247A6NEH6 219 aa18.23■□□□□ 0.51
VPS53-216ENST00000574029 SLCO1B7G3V0H7 640 aa18.23■□□□□ 0.51
VPS53-216ENST00000574029 IGFBP1P08833 259 aaPredicted RBP18.23■□□□□ 0.51
VPS53-216ENST00000574029 KITP10721 976 aa18.23■□□□□ 0.51
VPS53-216ENST00000574029 CHN2P52757 468 aa18.23■□□□□ 0.51
VPS53-216ENST00000574029 HOXC5Q00444 222 aa18.23■□□□□ 0.51
VPS53-216ENST00000574029 CEACAM16Q2WEN9 425 aa18.23■□□□□ 0.51
VPS53-216ENST00000574029 NXNQ6DKJ4 435 aa18.23■□□□□ 0.51
VPS53-216ENST00000574029 SPATA21Q7Z572 469 aa18.23■□□□□ 0.51
VPS53-216ENST00000574029 GPR137CQ8N3F9 429 aa18.23■□□□□ 0.51
VPS53-216ENST00000574029 SVOPLQ8N434 492 aa18.23■□□□□ 0.51
VPS53-216ENST00000574029 HPS1Q92902 700 aa18.23■□□□□ 0.51
VPS53-216ENST00000574029 ZNF837Q96EG3 531 aaPredicted RBP18.23■□□□□ 0.51
VPS53-216ENST00000574029 LOC102725191A0A1B0GVB3 256 aa18.22■□□□□ 0.51
VPS53-216ENST00000574029 AIM2O14862 343 aa18.22■□□□□ 0.51
VPS53-216ENST00000574029 OR2T1O43869 369 aa18.22■□□□□ 0.51
VPS53-216ENST00000574029 LILRA1O75019 489 aa18.22■□□□□ 0.51
VPS53-216ENST00000574029 ERCC1P07992 297 aaPredicted RBP18.22■□□□□ 0.51
VPS53-216ENST00000574029 NUDT7P0C024 238 aa18.22■□□□□ 0.51
VPS53-216ENST00000574029 IL2RGP31785 369 aa18.22■□□□□ 0.51
VPS53-216ENST00000574029 RGNQ15493 299 aa18.22■□□□□ 0.51
VPS53-216ENST00000574029 SLC9B1Q4ZJI4 515 aa18.22■□□□□ 0.51
VPS53-216ENST00000574029 FAM69AQ5T7M9 428 aa18.22■□□□□ 0.51
VPS53-216ENST00000574029 C5orf46Q6UWT4 87 aa18.22■□□□□ 0.51
VPS53-216ENST00000574029 CCDC36Q8IYA8 594 aa18.22■□□□□ 0.51
VPS53-216ENST00000574029 TMEM123Q8N131 208 aa18.22■□□□□ 0.51
VPS53-216ENST00000574029 ZCCHC24Q8N2G6 241 aaKnown RBP18.22■□□□□ 0.51
VPS53-216ENST00000574029 ZNF786Q8N393 782 aa18.22■□□□□ 0.51
VPS53-216ENST00000574029 IL17RDQ8NFM7 739 aa18.22■□□□□ 0.51
VPS53-216ENST00000574029 TAAR8Q969N4 342 aa18.22■□□□□ 0.51
VPS53-216ENST00000574029 OR2M2Q96R28 347 aa18.22■□□□□ 0.51
VPS53-216ENST00000574029 CRLF2Q9HC73 371 aa18.22■□□□□ 0.51
VPS53-216ENST00000574029 A4GALTQ9NPC4 353 aa18.22■□□□□ 0.51
VPS53-216ENST00000574029 ZNF446Q9NWS9 450 aa18.22■□□□□ 0.51
VPS53-216ENST00000574029 NBEAL1Q6ZS30 2694 aa18.22■□□□□ 0.51
VPS53-216ENST00000574029 M0R082 166 aa18.21■□□□□ 0.51
VPS53-216ENST00000574029 BMP2P12643 396 aa18.21■□□□□ 0.51
VPS53-216ENST00000574029 POLR2JP52435 117 aaKnown RBP18.21■□□□□ 0.51
VPS53-216ENST00000574029 NPRL3Q12980 569 aa18.21■□□□□ 0.51
VPS53-216ENST00000574029 C1DQ13901 141 aaKnown RBP18.21■□□□□ 0.51
VPS53-216ENST00000574029 LIPNQ5VXI9 398 aa18.21■□□□□ 0.51
VPS53-216ENST00000574029 MDP1Q86V88 176 aa18.21■□□□□ 0.51
VPS53-216ENST00000574029 LSMEM1Q8N8F7 131 aa18.21■□□□□ 0.51
VPS53-216ENST00000574029 PIK3C3Q8NEB9 887 aa18.21■□□□□ 0.51
VPS53-216ENST00000574029 OR9I1Q8NGQ6 314 aa18.21■□□□□ 0.51
VPS53-216ENST00000574029 BBS10Q8TAM1 723 aa18.21■□□□□ 0.51
VPS53-216ENST00000574029 ZNF417Q8TAU3 575 aa18.21■□□□□ 0.51
VPS53-216ENST00000574029 SLC38A4Q969I6 547 aa18.21■□□□□ 0.51
VPS53-216ENST00000574029 MAL2Q969L2 176 aa18.21■□□□□ 0.51
VPS53-216ENST00000574029 C1orf159Q96HA4 380 aa18.21■□□□□ 0.51
VPS53-216ENST00000574029 ZNF587Q96SQ5 575 aaPredicted RBP18.21■□□□□ 0.51
VPS53-216ENST00000574029 RSPO3Q9BXY4 272 aaPredicted RBP18.21■□□□□ 0.51
VPS53-216ENST00000574029 RPS6KB2Q9UBS0 482 aa18.21■□□□□ 0.51
VPS53-216ENST00000574029 USP22Q9UPT9 525 aa18.21■□□□□ 0.51
VPS53-216ENST00000574029 PCDHB14Q9Y5E9 798 aa18.21■□□□□ 0.51
VPS53-216ENST00000574029 ZNF99A8MXY4 864 aaPredicted RBP18.2■□□□□ 0.5
VPS53-216ENST00000574029 TRAF3IP2O43734 574 aaPredicted RBP18.2■□□□□ 0.5
VPS53-216ENST00000574029 C8BP07358 591 aa18.2■□□□□ 0.5
VPS53-216ENST00000574029 GRPRP30550 384 aa18.2■□□□□ 0.5
VPS53-216ENST00000574029 FADDQ13158 208 aa18.2■□□□□ 0.5
VPS53-216ENST00000574029 RIN1Q13671 783 aa18.2■□□□□ 0.5
VPS53-216ENST00000574029 ADRM1Q16186 407 aa18.2■□□□□ 0.5
VPS53-216ENST00000574029 PHYHD1Q5SRE7 291 aa18.2■□□□□ 0.5
VPS53-216ENST00000574029 C6orf10Q5SRN2 563 aa18.2■□□□□ 0.5
VPS53-216ENST00000574029 H1FNTQ75WM6 255 aaPredicted RBP18.2■□□□□ 0.5
VPS53-216ENST00000574029 MAVSQ7Z434 540 aa18.2■□□□□ 0.5
VPS53-216ENST00000574029 NET1Q7Z628 596 aaPredicted RBP18.2■□□□□ 0.5
VPS53-216ENST00000574029 CDK20Q8IZL9 346 aa18.2■□□□□ 0.5
VPS53-216ENST00000574029 RFLNBQ8N5W9 214 aa18.2■□□□□ 0.5
VPS53-216ENST00000574029 LINC01356Q8N9X3 169 aa18.2■□□□□ 0.5
VPS53-216ENST00000574029 ADPRHL1Q8NDY3 354 aa18.2■□□□□ 0.5
VPS53-216ENST00000574029 UBASH3BQ8TF42 649 aa18.2■□□□□ 0.5
VPS53-216ENST00000574029 CKAP2Q8WWK9 683 aa18.2■□□□□ 0.5
VPS53-216ENST00000574029 GTF2H4Q92759 462 aa18.2■□□□□ 0.5
VPS53-216ENST00000574029 PAIP1Q9H074 479 aaKnown RBP18.2■□□□□ 0.5
VPS53-216ENST00000574029 RAD21L1Q9H4I0 556 aa18.2■□□□□ 0.5
VPS53-216ENST00000574029 NOX3Q9HBY0 568 aa18.2■□□□□ 0.5
VPS53-216ENST00000574029 B3GNT2Q9NY97 397 aa18.2■□□□□ 0.5
VPS53-216ENST00000574029 TMEFF2Q9UIK5 374 aaPredicted RBP18.2■□□□□ 0.5
VPS53-216ENST00000574029 IGKV1D-42A0A075B6H8 117 aa18.19■□□□□ 0.5
VPS53-216ENST00000574029 SH3PXD2BA1X283 911 aa18.19■□□□□ 0.5
VPS53-216ENST00000574029 CLIC1O00299 241 aa18.19■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms