RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 IGKV3D-15A0A087WSY6 115 aa18.39■□□□□ 0.53
CLN3-212ENST00000564574 TRGV8A0A0C4DH27 118 aa18.39■□□□□ 0.53
CLN3-212ENST00000564574 ZNF716A6NP11 495 aa18.39■□□□□ 0.53
CLN3-212ENST00000564574 E9PLN8 166 aa18.39■□□□□ 0.53
CLN3-212ENST00000564574 GPR171O14626 319 aa18.39■□□□□ 0.53
CLN3-212ENST00000564574 RNF13O43567 381 aa18.39■□□□□ 0.53
CLN3-212ENST00000564574 CDH2P19022 906 aaPredicted RBP18.39■□□□□ 0.53
CLN3-212ENST00000564574 AHCYP23526 432 aa18.39■□□□□ 0.53
CLN3-212ENST00000564574 SLC6A6P31641 620 aa18.39■□□□□ 0.53
CLN3-212ENST00000564574 TIMP3P35625 211 aa18.39■□□□□ 0.53
CLN3-212ENST00000564574 RAD23AP54725 363 aa18.39■□□□□ 0.53
CLN3-212ENST00000564574 IL1RL1Q01638 556 aa18.39■□□□□ 0.53
CLN3-212ENST00000564574 TMEM211Q6ICI0 200 aa18.39■□□□□ 0.53
CLN3-212ENST00000564574 GPAT4Q86UL3 456 aa18.39■□□□□ 0.53
CLN3-212ENST00000564574 LRRC75AQ8NAA5 344 aa18.39■□□□□ 0.53
CLN3-212ENST00000564574 OR52L1Q8NGH7 329 aa18.39■□□□□ 0.53
CLN3-212ENST00000564574 MOSPD2Q8NHP6 518 aa18.39■□□□□ 0.53
CLN3-212ENST00000564574 GMPPAQ96IJ6 420 aaPredicted RBP18.39■□□□□ 0.53
CLN3-212ENST00000564574 SLC29A1Q99808 456 aa18.39■□□□□ 0.53
CLN3-212ENST00000564574 VKORC1Q9BQB6 163 aa18.39■□□□□ 0.53
CLN3-212ENST00000564574 VCXQ9H320 206 aa18.39■□□□□ 0.53
CLN3-212ENST00000564574 VCX3BQ9H321 246 aa18.39■□□□□ 0.53
CLN3-212ENST00000564574 BCO1Q9HAY6 547 aa18.39■□□□□ 0.53
CLN3-212ENST00000564574 INIPQ9NRY2 104 aa18.39■□□□□ 0.53
CLN3-212ENST00000564574 EMC3Q9P0I2 261 aa18.39■□□□□ 0.53
CLN3-212ENST00000564574 KLHL13Q9P2N7 655 aa18.39■□□□□ 0.53
CLN3-212ENST00000564574 B3GAT1Q9P2W7 334 aa18.39■□□□□ 0.53
CLN3-212ENST00000564574 OSGIN2Q9Y236 505 aa18.39■□□□□ 0.53
CLN3-212ENST00000564574 NPIPB13A6NJU9 1138 aa18.38■□□□□ 0.53
CLN3-212ENST00000564574 ZNF724A8MTY0 619 aa18.38■□□□□ 0.53
CLN3-212ENST00000564574 NPIPB4C9JG80 1138 aa18.38■□□□□ 0.53
CLN3-212ENST00000564574 C11orf98E9PRG8 122 aa18.38■□□□□ 0.53
CLN3-212ENST00000564574 RAMP1O60894 148 aa18.38■□□□□ 0.53
CLN3-212ENST00000564574 TP53P04637 393 aaPredicted RBP18.38■□□□□ 0.53
CLN3-212ENST00000564574 ZNF43P17038 809 aa18.38■□□□□ 0.53
CLN3-212ENST00000564574 FXYD6P3P58550 94 aa18.38■□□□□ 0.53
CLN3-212ENST00000564574 ESRRGP62508 458 aa18.38■□□□□ 0.53
CLN3-212ENST00000564574 MRPL49Q13405 166 aaKnown RBP18.38■□□□□ 0.53
CLN3-212ENST00000564574 C1DQ13901 141 aaKnown RBP18.38■□□□□ 0.53
CLN3-212ENST00000564574 KIF18BQ86Y91 864 aa18.38■□□□□ 0.53
CLN3-212ENST00000564574 C9orf106Q8NAJ2 232 aa18.38■□□□□ 0.53
CLN3-212ENST00000564574 OR9K2Q8NGE7 335 aa18.38■□□□□ 0.53
CLN3-212ENST00000564574 TEX47Q8TBZ9 253 aa18.38■□□□□ 0.53
CLN3-212ENST00000564574 ABHD3Q8WU67 409 aa18.38■□□□□ 0.53
CLN3-212ENST00000564574 RDH12Q96NR8 316 aa18.38■□□□□ 0.53
CLN3-212ENST00000564574 TTYH2Q9BSA4 534 aa18.38■□□□□ 0.53
CLN3-212ENST00000564574 EGLN3Q9H6Z9 239 aa18.38■□□□□ 0.53
CLN3-212ENST00000564574 TBC1D23Q9NUY8 699 aa18.38■□□□□ 0.53
CLN3-212ENST00000564574 KALRNO60229 2985 aa18.38■□□□□ 0.53
CLN3-212ENST00000564574 A0A1W2PRG6 482 aa18.37■□□□□ 0.53
CLN3-212ENST00000564574 KDM4EB2RXH2 506 aaPredicted RBP18.37■□□□□ 0.53
CLN3-212ENST00000564574 H3BN98 237 aa18.37■□□□□ 0.53
CLN3-212ENST00000564574 CRHP06850 196 aa18.37■□□□□ 0.53
CLN3-212ENST00000564574 ZNF26P17031 533 aaPredicted RBP18.37■□□□□ 0.53
CLN3-212ENST00000564574 RPL4P36578 427 aaKnown RBP18.37■□□□□ 0.53
CLN3-212ENST00000564574 CTXN1P60606 82 aa18.37■□□□□ 0.53
CLN3-212ENST00000564574 POU3F1Q03052 451 aaPredicted RBP18.37■□□□□ 0.53
CLN3-212ENST00000564574 LRRC36Q1X8D7 754 aa18.37■□□□□ 0.53
CLN3-212ENST00000564574 RIPPLY2Q5TAB7 128 aa18.37■□□□□ 0.53
CLN3-212ENST00000564574 FBXW10Q5XX13 1052 aa18.37■□□□□ 0.53
CLN3-212ENST00000564574 PLXDC2Q6UX71 529 aa18.37■□□□□ 0.53
CLN3-212ENST00000564574 DPY19L2P2Q6ZN68 376 aa18.37■□□□□ 0.53
CLN3-212ENST00000564574 SEM1Q6ZVN7 128 aa18.37■□□□□ 0.53
CLN3-212ENST00000564574 KDM8Q8N371 416 aa18.37■□□□□ 0.53
CLN3-212ENST00000564574 SAMD8Q96LT4 415 aa18.37■□□□□ 0.53
CLN3-212ENST00000564574 ING1Q9UK53 422 aaPredicted RBP18.37■□□□□ 0.53
CLN3-212ENST00000564574 POLEQ07864 2286 aa18.37■□□□□ 0.53
CLN3-212ENST00000564574 GCN1Q92616 2671 aaKnown RBP18.36■□□□□ 0.53
CLN3-212ENST00000564574 MCIDASD6RGH6 385 aa18.36■□□□□ 0.53
CLN3-212ENST00000564574 AKAP8O43823 692 aaKnown RBP18.36■□□□□ 0.53
CLN3-212ENST00000564574 SS18L1O75177 396 aaPredicted RBP18.36■□□□□ 0.53
CLN3-212ENST00000564574 SOX14O95416 240 aa18.36■□□□□ 0.53
CLN3-212ENST00000564574 PLGP00747 810 aaPredicted RBP18.36■□□□□ 0.53
CLN3-212ENST00000564574 IL2RAP01589 272 aa18.36■□□□□ 0.53
CLN3-212ENST00000564574 IGHMP01871 453 aa18.36■□□□□ 0.53
CLN3-212ENST00000564574 F13BP05160 661 aa18.36■□□□□ 0.53
CLN3-212ENST00000564574 YES1P07947 543 aa18.36■□□□□ 0.53
CLN3-212ENST00000564574 CD14P08571 375 aa18.36■□□□□ 0.53
CLN3-212ENST00000564574 GLI4P10075 376 aa18.36■□□□□ 0.53
CLN3-212ENST00000564574 APEHP13798 732 aaKnown RBP18.36■□□□□ 0.53
CLN3-212ENST00000564574 CRISP1P54107 249 aa18.36■□□□□ 0.53
CLN3-212ENST00000564574 SLC36A3Q495N2 470 aa18.36■□□□□ 0.53
CLN3-212ENST00000564574 EEF1A1P5Q5VTE0 462 aa18.36■□□□□ 0.53
CLN3-212ENST00000564574 THSD4Q6ZMP0 1018 aa18.36■□□□□ 0.53
CLN3-212ENST00000564574 CREB3L2Q70SY1 520 aa18.36■□□□□ 0.53
CLN3-212ENST00000564574 HDDC2Q7Z4H3 204 aa18.36■□□□□ 0.53
CLN3-212ENST00000564574 GALNT5Q7Z7M9 940 aa18.36■□□□□ 0.53
CLN3-212ENST00000564574 TMEM45BQ96B21 275 aa18.36■□□□□ 0.53
CLN3-212ENST00000564574 DMRTA2Q96SC8 542 aa18.36■□□□□ 0.53
CLN3-212ENST00000564574 GABARAPL3Q9BY60 117 aa18.36■□□□□ 0.53
CLN3-212ENST00000564574 TXNIPQ9H3M7 391 aa18.36■□□□□ 0.53
CLN3-212ENST00000564574 NRIP3Q9NQ35 241 aa18.36■□□□□ 0.53
CLN3-212ENST00000564574 SH3BGRL2Q9UJC5 107 aa18.36■□□□□ 0.53
CLN3-212ENST00000564574 BAIAP2Q9UQB8 552 aa18.36■□□□□ 0.53
CLN3-212ENST00000564574 MEMO1Q9Y316 297 aa18.36■□□□□ 0.53
CLN3-212ENST00000564574 FLVCR1Q9Y5Y0 555 aa18.36■□□□□ 0.53
CLN3-212ENST00000564574 A0A1B0GUH1 482 aa18.35■□□□□ 0.53
CLN3-212ENST00000564574 IMPA2O14732 288 aa18.35■□□□□ 0.53
CLN3-212ENST00000564574 TRAF3IP2O43734 574 aaPredicted RBP18.35■□□□□ 0.53
CLN3-212ENST00000564574 MITFO75030 526 aaPredicted RBP18.35■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms