RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 TMEM225Q6GV28 225 aa11.48□□□□□ -0.57
CLK3-214ENST00000564096 ABLIM2Q6H8Q1 611 aa11.48□□□□□ -0.57
CLK3-214ENST00000564096 C19orf48Q6RUI8 117 aa11.48□□□□□ -0.57
CLK3-214ENST00000564096 PTCHD4Q6ZW05 846 aa11.48□□□□□ -0.57
CLK3-214ENST00000564096 ADCK1Q86TW2 530 aa11.48□□□□□ -0.57
CLK3-214ENST00000564096 IGFN1Q86VF2 1251 aa11.48□□□□□ -0.57
CLK3-214ENST00000564096 TMEM99Q8N816 258 aa11.48□□□□□ -0.57
CLK3-214ENST00000564096 LSM14AQ8ND56 463 aaKnown RBP11.48□□□□□ -0.57
CLK3-214ENST00000564096 OR4Q3Q8NH05 313 aa11.48□□□□□ -0.57
CLK3-214ENST00000564096 WBP1Q96G27 269 aa11.48□□□□□ -0.57
CLK3-214ENST00000564096 Q96MT0 163 aa11.48□□□□□ -0.57
CLK3-214ENST00000564096 TIMP4Q99727 224 aa11.48□□□□□ -0.57
CLK3-214ENST00000564096 SF3B5Q9BWJ5 86 aaKnown RBP11.48□□□□□ -0.57
CLK3-214ENST00000564096 SRXN1Q9BYN0 137 aa11.48□□□□□ -0.57
CLK3-214ENST00000564096 PRDM14Q9GZV8 571 aa11.48□□□□□ -0.57
CLK3-214ENST00000564096 CMC2Q9NRP2 79 aa11.48□□□□□ -0.57
CLK3-214ENST00000564096 TAS2R5Q9NYW4 299 aa11.48□□□□□ -0.57
CLK3-214ENST00000564096 SEC14L4Q9UDX3 406 aa11.48□□□□□ -0.57
CLK3-214ENST00000564096 BLOC1S6Q9UL45 172 aa11.48□□□□□ -0.57
CLK3-214ENST00000564096 ZNF175Q9Y473 711 aa11.48□□□□□ -0.57
CLK3-214ENST00000564096 TEX13CA0A0J9YWL9 993 aa11.47□□□□□ -0.57
CLK3-214ENST00000564096 SMAD9O15198 467 aaKnown RBP11.47□□□□□ -0.57
CLK3-214ENST00000564096 SURF4O15260 269 aa11.47□□□□□ -0.57
CLK3-214ENST00000564096 PLGP00747 810 aaPredicted RBP11.47□□□□□ -0.57
CLK3-214ENST00000564096 F13BP05160 661 aa11.47□□□□□ -0.57
CLK3-214ENST00000564096 ZNF43P17038 809 aa11.47□□□□□ -0.57
CLK3-214ENST00000564096 ERVK-25P63136 954 aa11.47□□□□□ -0.57
CLK3-214ENST00000564096 HSF1Q00613 529 aa11.47□□□□□ -0.57
CLK3-214ENST00000564096 ST3GAL2Q16842 350 aa11.47□□□□□ -0.57
CLK3-214ENST00000564096 MEDAGQ5VYS4 303 aa11.47□□□□□ -0.57
CLK3-214ENST00000564096 FCRLAQ7L513 359 aa11.47□□□□□ -0.57
CLK3-214ENST00000564096 LSRQ86X29 649 aaPredicted RBP11.47□□□□□ -0.57
CLK3-214ENST00000564096 ENTHD1Q8IYW4 607 aa11.47□□□□□ -0.57
CLK3-214ENST00000564096 Q8NA96 180 aa11.47□□□□□ -0.57
CLK3-214ENST00000564096 LRRC75AQ8NAA5 344 aa11.47□□□□□ -0.57
CLK3-214ENST00000564096 TMEM163Q8TC26 289 aa11.47□□□□□ -0.57
CLK3-214ENST00000564096 OXGR1Q96P68 337 aa11.47□□□□□ -0.57
CLK3-214ENST00000564096 TSPAN32Q96QS1 320 aa11.47□□□□□ -0.57
CLK3-214ENST00000564096 PRRG4Q9BZD6 226 aa11.47□□□□□ -0.57
CLK3-214ENST00000564096 TXNIPQ9H3M7 391 aa11.47□□□□□ -0.57
CLK3-214ENST00000564096 FN3KQ9H479 309 aa11.47□□□□□ -0.57
CLK3-214ENST00000564096 EMC3Q9P0I2 261 aa11.47□□□□□ -0.57
CLK3-214ENST00000564096 KLHL9Q9P2J3 617 aa11.47□□□□□ -0.57
CLK3-214ENST00000564096 RNF6Q9Y252 685 aa11.47□□□□□ -0.57
CLK3-214ENST00000564096 ADAM18Q9Y3Q7 739 aa11.47□□□□□ -0.57
CLK3-214ENST00000564096 IER3IP1Q9Y5U9 82 aa11.47□□□□□ -0.57
CLK3-214ENST00000564096 EML6Q6ZMW3 1958 aa11.47□□□□□ -0.57
CLK3-214ENST00000564096 ANKRD11Q6UB99 2663 aaPredicted RBP11.46□□□□□ -0.57
CLK3-214ENST00000564096 A0A1B0GTH9 108 aa11.46□□□□□ -0.57
CLK3-214ENST00000564096 LOC102725191A0A1B0GVB3 256 aa11.46□□□□□ -0.57
CLK3-214ENST00000564096 FIGNL2A6NMB9 653 aa11.46□□□□□ -0.57
CLK3-214ENST00000564096 H0YC42 278 aa11.46□□□□□ -0.57
CLK3-214ENST00000564096 TXNDC12O95881 172 aa11.46□□□□□ -0.57
CLK3-214ENST00000564096 BCL10O95999 233 aa11.46□□□□□ -0.57
CLK3-214ENST00000564096 RENP00797 406 aa11.46□□□□□ -0.57
CLK3-214ENST00000564096 ACVR2AP27037 513 aa11.46□□□□□ -0.57
CLK3-214ENST00000564096 PTGER4P35408 488 aa11.46□□□□□ -0.57
CLK3-214ENST00000564096 P2RY4P51582 365 aa11.46□□□□□ -0.57
CLK3-214ENST00000564096 RPL27P61353 136 aaKnown RBP11.46□□□□□ -0.57
CLK3-214ENST00000564096 SNRPGP62308 76 aaKnown RBP11.46□□□□□ -0.57
CLK3-214ENST00000564096 H3F3AP84243 136 aa11.46□□□□□ -0.57
CLK3-214ENST00000564096 RBPJQ06330 500 aa11.46□□□□□ -0.57
CLK3-214ENST00000564096 KHDRBS1Q07666 443 aaKnown RBP eCLIP11.46□□□□□ -0.57
CLK3-214ENST00000564096 CD47Q08722 323 aa11.46□□□□□ -0.57
CLK3-214ENST00000564096 MAD2L1BPQ15013 274 aaPredicted RBP11.46□□□□□ -0.57
CLK3-214ENST00000564096 PON3Q15166 354 aa11.46□□□□□ -0.57
CLK3-214ENST00000564096 RNPS1Q15287 305 aaKnown RBP11.46□□□□□ -0.57
CLK3-214ENST00000564096 ACKR1Q16570 336 aa11.46□□□□□ -0.57
CLK3-214ENST00000564096 ACSM5Q6NUN0 579 aa11.46□□□□□ -0.57
CLK3-214ENST00000564096 SLC35D2Q76EJ3 337 aa11.46□□□□□ -0.57
CLK3-214ENST00000564096 GID4Q8IVV7 300 aa11.46□□□□□ -0.57
CLK3-214ENST00000564096 MCEMP1Q8IX19 187 aa11.46□□□□□ -0.57
CLK3-214ENST00000564096 EXD3Q8N9H8 876 aa11.46□□□□□ -0.57
CLK3-214ENST00000564096 RNF128Q8TEB7 428 aa11.46□□□□□ -0.57
CLK3-214ENST00000564096 FAR1Q8WVX9 515 aa11.46□□□□□ -0.57
CLK3-214ENST00000564096 WDYHV1Q96HA8 205 aa11.46□□□□□ -0.57
CLK3-214ENST00000564096 ADAD1Q96M93 576 aaKnown RBP11.46□□□□□ -0.57
CLK3-214ENST00000564096 RASSF1Q9NS23 344 aa11.46□□□□□ -0.57
CLK3-214ENST00000564096 CLN6Q9NWW5 311 aa11.46□□□□□ -0.57
CLK3-214ENST00000564096 TNRC6AQ8NDV7 1962 aaKnown RBP11.46□□□□□ -0.58
CLK3-214ENST00000564096 CNTRLQ7Z7A1 2325 aa11.45□□□□□ -0.58
CLK3-214ENST00000564096 IGHV3-15A0A0B4J1V0 119 aa11.45□□□□□ -0.58
CLK3-214ENST00000564096 SLC22A20A6NK97 555 aa11.45□□□□□ -0.58
CLK3-214ENST00000564096 PRR23D1E9PI22 279 aaPredicted RBP11.45□□□□□ -0.58
CLK3-214ENST00000564096 MS4A18H0YCH9 400 aa11.45□□□□□ -0.58
CLK3-214ENST00000564096 M0R129 80 aa11.45□□□□□ -0.58
CLK3-214ENST00000564096 GPR171O14626 319 aa11.45□□□□□ -0.58
CLK3-214ENST00000564096 TLX2O43763 284 aaPredicted RBP11.45□□□□□ -0.58
CLK3-214ENST00000564096 PRKYO43930 277 aa11.45□□□□□ -0.58
CLK3-214ENST00000564096 CYTIPO60759 359 aa11.45□□□□□ -0.58
CLK3-214ENST00000564096 IGHG1P01857 330 aa11.45□□□□□ -0.58
CLK3-214ENST00000564096 PRR23D2P0DMB1 279 aaPredicted RBP11.45□□□□□ -0.58
CLK3-214ENST00000564096 GABRA1P14867 456 aa11.45□□□□□ -0.58
CLK3-214ENST00000564096 IFNGR1P15260 489 aa11.45□□□□□ -0.58
CLK3-214ENST00000564096 ABOP16442 354 aa11.45□□□□□ -0.58
CLK3-214ENST00000564096 PTGS2P35354 604 aa11.45□□□□□ -0.58
CLK3-214ENST00000564096 ACVR1BP36896 505 aa11.45□□□□□ -0.58
CLK3-214ENST00000564096 MLLT10P55197 1068 aa11.45□□□□□ -0.58
CLK3-214ENST00000564096 ISL1P61371 349 aa11.45□□□□□ -0.58
CLK3-214ENST00000564096 CSNK2BP67870 215 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms