RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 ZNF417Q8TAU3 575 aa14.59□□□□□ -0.07
CLN3-211ENST00000564091 MGARPQ8TDB4 240 aa14.59□□□□□ -0.07
CLN3-211ENST00000564091 NEU4Q8WWR8 484 aaPredicted RBP14.59□□□□□ -0.07
CLN3-211ENST00000564091 TAAR8Q969N4 342 aa14.59□□□□□ -0.07
CLN3-211ENST00000564091 OXGR1Q96P68 337 aa14.59□□□□□ -0.07
CLN3-211ENST00000564091 SNX18Q96RF0 628 aa14.59□□□□□ -0.07
CLN3-211ENST00000564091 ZNF587Q96SQ5 575 aaPredicted RBP14.59□□□□□ -0.07
CLN3-211ENST00000564091 RSPO3Q9BXY4 272 aaPredicted RBP14.59□□□□□ -0.07
CLN3-211ENST00000564091 RMND5AQ9H871 391 aa14.59□□□□□ -0.07
CLN3-211ENST00000564091 CRLF2Q9HC73 371 aa14.59□□□□□ -0.07
CLN3-211ENST00000564091 MOV10Q9HCE1 1003 aaKnown RBP14.59□□□□□ -0.07
CLN3-211ENST00000564091 HEATR1Q9H583 2144 aaKnown RBP14.59□□□□□ -0.07
CLN3-211ENST00000564091 VSTM5A8MXK1 200 aa14.58□□□□□ -0.08
CLN3-211ENST00000564091 LYNX1G3V0Z9 82 aa14.58□□□□□ -0.08
CLN3-211ENST00000564091 C8BP07358 591 aa14.58□□□□□ -0.08
CLN3-211ENST00000564091 LYNX1P0DP58 116 aa14.58□□□□□ -0.08
CLN3-211ENST00000564091 CBLP22681 906 aa14.58□□□□□ -0.08
CLN3-211ENST00000564091 GIFP27352 417 aa14.58□□□□□ -0.08
CLN3-211ENST00000564091 APEX1P27695 318 aaKnown RBP14.58□□□□□ -0.08
CLN3-211ENST00000564091 IL1RL1Q01638 556 aa14.58□□□□□ -0.08
CLN3-211ENST00000564091 SQLEQ14534 574 aa14.58□□□□□ -0.08
CLN3-211ENST00000564091 RGNQ15493 299 aa14.58□□□□□ -0.08
CLN3-211ENST00000564091 TRIP10Q15642 601 aa14.58□□□□□ -0.08
CLN3-211ENST00000564091 ADRM1Q16186 407 aa14.58□□□□□ -0.08
CLN3-211ENST00000564091 PHYHD1Q5SRE7 291 aa14.58□□□□□ -0.08
CLN3-211ENST00000564091 MAVSQ7Z434 540 aa14.58□□□□□ -0.08
CLN3-211ENST00000564091 CDK20Q8IZL9 346 aa14.58□□□□□ -0.08
CLN3-211ENST00000564091 ANKK1Q8NFD2 765 aa14.58□□□□□ -0.08
CLN3-211ENST00000564091 C1orf159Q96HA4 380 aa14.58□□□□□ -0.08
CLN3-211ENST00000564091 MAELQ96JY0 434 aaKnown RBP14.58□□□□□ -0.08
CLN3-211ENST00000564091 ANKRD27Q96NW4 1050 aa14.58□□□□□ -0.08
CLN3-211ENST00000564091 OR2M2Q96R28 347 aa14.58□□□□□ -0.08
CLN3-211ENST00000564091 OR52B2Q96RD2 323 aa14.58□□□□□ -0.08
CLN3-211ENST00000564091 PARD6BQ9BYG5 372 aa14.58□□□□□ -0.08
CLN3-211ENST00000564091 BCL2L10Q9HD36 194 aa14.58□□□□□ -0.08
CLN3-211ENST00000564091 DYNLRB1Q9NP97 96 aa14.58□□□□□ -0.08
CLN3-211ENST00000564091 SDR39U1Q9NRG7 319 aaPredicted RBP14.58□□□□□ -0.08
CLN3-211ENST00000564091 THUMPD1Q9NXG2 353 aaKnown RBP14.58□□□□□ -0.08
CLN3-211ENST00000564091 ZIM2Q9NZV7 527 aa14.58□□□□□ -0.08
CLN3-211ENST00000564091 RPS6KB2Q9UBS0 482 aa14.58□□□□□ -0.08
CLN3-211ENST00000564091 PCDHB14Q9Y5E9 798 aa14.58□□□□□ -0.08
CLN3-211ENST00000564091 IGKV1D-42A0A075B6H8 117 aa14.57□□□□□ -0.08
CLN3-211ENST00000564091 A0A1B0GWA3 101 aa14.57□□□□□ -0.08
CLN3-211ENST00000564091 M0R3G1 203 aa14.57□□□□□ -0.08
CLN3-211ENST00000564091 AIM2O14862 343 aa14.57□□□□□ -0.08
CLN3-211ENST00000564091 HLA-HP01893 362 aa14.57□□□□□ -0.08
CLN3-211ENST00000564091 ERCC1P07992 297 aaPredicted RBP14.57□□□□□ -0.08
CLN3-211ENST00000564091 ADRA2AP08913 450 aa14.57□□□□□ -0.08
CLN3-211ENST00000564091 TACSTD2P09758 323 aa14.57□□□□□ -0.08
CLN3-211ENST00000564091 HTR2AP28223 471 aa14.57□□□□□ -0.08
CLN3-211ENST00000564091 GRPRP30550 384 aa14.57□□□□□ -0.08
CLN3-211ENST00000564091 ARR3P36575 388 aa14.57□□□□□ -0.08
CLN3-211ENST00000564091 POLR2JP52435 117 aaKnown RBP14.57□□□□□ -0.08
CLN3-211ENST00000564091 CHN2P52757 468 aa14.57□□□□□ -0.08
CLN3-211ENST00000564091 SNTB2Q13425 540 aaKnown RBP14.57□□□□□ -0.08
CLN3-211ENST00000564091 LIPNQ5VXI9 398 aa14.57□□□□□ -0.08
CLN3-211ENST00000564091 CARD17Q5XLA6 110 aa14.57□□□□□ -0.08
CLN3-211ENST00000564091 KRT80Q6KB66 452 aa14.57□□□□□ -0.08
CLN3-211ENST00000564091 C6orf89Q6UWU4 347 aa14.57□□□□□ -0.08
CLN3-211ENST00000564091 COMTD1Q86VU5 262 aa14.57□□□□□ -0.08
CLN3-211ENST00000564091 ZNF786Q8N393 782 aa14.57□□□□□ -0.08
CLN3-211ENST00000564091 CKAP2Q8WWK9 683 aa14.57□□□□□ -0.08
CLN3-211ENST00000564091 TPK1Q9H3S4 243 aa14.57□□□□□ -0.08
CLN3-211ENST00000564091 NOX3Q9HBY0 568 aa14.57□□□□□ -0.08
CLN3-211ENST00000564091 TMEM120BA0PK00 339 aa14.56□□□□□ -0.08
CLN3-211ENST00000564091 SLCO1B7G3V0H7 640 aa14.56□□□□□ -0.08
CLN3-211ENST00000564091 CLIC1O00299 241 aa14.56□□□□□ -0.08
CLN3-211ENST00000564091 UBDO15205 165 aa14.56□□□□□ -0.08
CLN3-211ENST00000564091 TRAF3IP2O43734 574 aaPredicted RBP14.56□□□□□ -0.08
CLN3-211ENST00000564091 OR2T1O43869 369 aa14.56□□□□□ -0.08
CLN3-211ENST00000564091 FZD7O75084 574 aa14.56□□□□□ -0.08
CLN3-211ENST00000564091 HLA-DOBP13765 273 aa14.56□□□□□ -0.08
CLN3-211ENST00000564091 IFNGR1P15260 489 aa14.56□□□□□ -0.08
CLN3-211ENST00000564091 RIN1Q13671 783 aa14.56□□□□□ -0.08
CLN3-211ENST00000564091 DAG1Q14118 895 aa14.56□□□□□ -0.08
CLN3-211ENST00000564091 MSMPQ1L6U9 139 aa14.56□□□□□ -0.08
CLN3-211ENST00000564091 FAM69AQ5T7M9 428 aa14.56□□□□□ -0.08
CLN3-211ENST00000564091 SLC2A7Q6PXP3 512 aa14.56□□□□□ -0.08
CLN3-211ENST00000564091 MSANTD1Q6ZTZ1 278 aa14.56□□□□□ -0.08
CLN3-211ENST00000564091 H1FNTQ75WM6 255 aaPredicted RBP14.56□□□□□ -0.08
CLN3-211ENST00000564091 TMEM123Q8N131 208 aa14.56□□□□□ -0.08
CLN3-211ENST00000564091 LINC01356Q8N9X3 169 aa14.56□□□□□ -0.08
CLN3-211ENST00000564091 PIK3C3Q8NEB9 887 aa14.56□□□□□ -0.08
CLN3-211ENST00000564091 BBS10Q8TAM1 723 aa14.56□□□□□ -0.08
CLN3-211ENST00000564091 UBASH3BQ8TF42 649 aa14.56□□□□□ -0.08
CLN3-211ENST00000564091 GTF2H4Q92759 462 aa14.56□□□□□ -0.08
CLN3-211ENST00000564091 MS4A3Q96HJ5 214 aa14.56□□□□□ -0.08
CLN3-211ENST00000564091 EMC6Q9BV81 110 aa14.56□□□□□ -0.08
CLN3-211ENST00000564091 PAIP1Q9H074 479 aaKnown RBP14.56□□□□□ -0.08
CLN3-211ENST00000564091 A4GALTQ9NPC4 353 aa14.56□□□□□ -0.08
CLN3-211ENST00000564091 TMEFF2Q9UIK5 374 aaPredicted RBP14.56□□□□□ -0.08
CLN3-211ENST00000564091 FBXO9Q9UK97 447 aaPredicted RBP14.56□□□□□ -0.08
CLN3-211ENST00000564091 USP22Q9UPT9 525 aa14.56□□□□□ -0.08
CLN3-211ENST00000564091 YLPM1P49750 1951 aaKnown RBP14.55□□□□□ -0.08
CLN3-211ENST00000564091 TRAV36DV7A0A075B6V5 113 aa14.55□□□□□ -0.08
CLN3-211ENST00000564091 ZNF99A8MXY4 864 aaPredicted RBP14.55□□□□□ -0.08
CLN3-211ENST00000564091 C5orf58C9J3I9 102 aa14.55□□□□□ -0.08
CLN3-211ENST00000564091 MS4A18H0YCH9 400 aa14.55□□□□□ -0.08
CLN3-211ENST00000564091 HPRP00739 348 aa14.55□□□□□ -0.08
CLN3-211ENST00000564091 SRP14P37108 136 aaKnown RBP14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms