RNA–Protein interactions for RNA: ENST00000559961.1

SNX1-209, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-209ENST00000559961 LRIF1Q5T3J3 769 aa10.97□□□□□ -0.65
SNX1-209ENST00000559961 CXXC5Q7LFL8 322 aaKnown RBP10.97□□□□□ -0.65
SNX1-209ENST00000559961 MAVSQ7Z434 540 aa10.97□□□□□ -0.65
SNX1-209ENST00000559961 KDM8Q8N371 416 aa10.97□□□□□ -0.65
SNX1-209ENST00000559961 HIPK4Q8NE63 616 aa10.97□□□□□ -0.65
SNX1-209ENST00000559961 OR6N1Q8NGY5 312 aa10.97□□□□□ -0.65
SNX1-209ENST00000559961 ZNF417Q8TAU3 575 aa10.97□□□□□ -0.65
SNX1-209ENST00000559961 TMEM158Q8WZ71 300 aa10.97□□□□□ -0.65
SNX1-209ENST00000559961 HTRA1Q92743 480 aa10.97□□□□□ -0.65
SNX1-209ENST00000559961 TAAR8Q969N4 342 aa10.97□□□□□ -0.65
SNX1-209ENST00000559961 KTI12Q96EK9 354 aaPredicted RBP10.97□□□□□ -0.65
SNX1-209ENST00000559961 ZNF587Q96SQ5 575 aaPredicted RBP10.97□□□□□ -0.65
SNX1-209ENST00000559961 TMEM38AQ9H6F2 299 aa10.97□□□□□ -0.65
SNX1-209ENST00000559961 CRLF2Q9HC73 371 aa10.97□□□□□ -0.65
SNX1-209ENST00000559961 LEF1Q9UJU2 399 aaPredicted RBP10.97□□□□□ -0.65
SNX1-209ENST00000559961 LOC102725191A0A1B0GVB3 256 aa10.96□□□□□ -0.65
SNX1-209ENST00000559961 LOC390937A0A1W2PQ73 354 aa10.96□□□□□ -0.65
SNX1-209ENST00000559961 RNF212BA8MTL3 300 aa10.96□□□□□ -0.65
SNX1-209ENST00000559961 FTCDNL1E5RQL4 147 aa10.96□□□□□ -0.65
SNX1-209ENST00000559961 RPL36A-HNRNPH2H7BZ11 118 aa10.96□□□□□ -0.65
SNX1-209ENST00000559961 M0R3G1 203 aa10.96□□□□□ -0.65
SNX1-209ENST00000559961 HIST1H2ABP04908 130 aa10.96□□□□□ -0.65
SNX1-209ENST00000559961 CBR1P16152 277 aa10.96□□□□□ -0.65
SNX1-209ENST00000559961 NPR2P20594 1047 aa10.96□□□□□ -0.65
SNX1-209ENST00000559961 CBLP22681 906 aa10.96□□□□□ -0.65
SNX1-209ENST00000559961 ATP4BP51164 291 aa10.96□□□□□ -0.65
SNX1-209ENST00000559961 VLDLRP98155 873 aa10.96□□□□□ -0.65
SNX1-209ENST00000559961 SLC25A3Q00325 362 aa10.96□□□□□ -0.65
SNX1-209ENST00000559961 NAAAQ02083 359 aa10.96□□□□□ -0.65
SNX1-209ENST00000559961 NPRL3Q12980 569 aa10.96□□□□□ -0.65
SNX1-209ENST00000559961 GGTLC2Q14390 218 aa10.96□□□□□ -0.65
SNX1-209ENST00000559961 C6orf52Q5T4I8 152 aa10.96□□□□□ -0.65
SNX1-209ENST00000559961 C6orf89Q6UWU4 347 aa10.96□□□□□ -0.65
SNX1-209ENST00000559961 HIST3H2AQ7L7L0 130 aa10.96□□□□□ -0.65
SNX1-209ENST00000559961 SLC30A8Q8IWU4 369 aa10.96□□□□□ -0.65
SNX1-209ENST00000559961 SCAIQ8N9R8 606 aa10.96□□□□□ -0.65
SNX1-209ENST00000559961 C11orf65Q8NCR3 313 aa10.96□□□□□ -0.65
SNX1-209ENST00000559961 ADPRHL1Q8NDY3 354 aa10.96□□□□□ -0.65
SNX1-209ENST00000559961 OR6S1Q8NH40 331 aa10.96□□□□□ -0.65
SNX1-209ENST00000559961 C10orf105Q8TEF2 133 aa10.96□□□□□ -0.65
SNX1-209ENST00000559961 HIST1H2ACQ93077 130 aa10.96□□□□□ -0.65
SNX1-209ENST00000559961 ATP6V1G3Q96LB4 118 aa10.96□□□□□ -0.65
SNX1-209ENST00000559961 GPR35Q9HC97 309 aa10.96□□□□□ -0.65
SNX1-209ENST00000559961 DYNLRB1Q9NP97 96 aa10.96□□□□□ -0.65
SNX1-209ENST00000559961 INTS9Q9NV88 658 aaKnown RBP10.96□□□□□ -0.65
SNX1-209ENST00000559961 ARGLU1Q9NWB6 273 aaPredicted RBP10.96□□□□□ -0.65
SNX1-209ENST00000559961 FBXL3Q9UKT7 428 aa10.96□□□□□ -0.65
SNX1-209ENST00000559961 KCNS2Q9ULS6 477 aa10.96□□□□□ -0.65
SNX1-209ENST00000559961 NDUFAF1Q9Y375 327 aa10.96□□□□□ -0.65
SNX1-209ENST00000559961 ZNF99A8MXY4 864 aaPredicted RBP10.95□□□□□ -0.66
SNX1-209ENST00000559961 GPRIN2O60269 458 aa10.95□□□□□ -0.66
SNX1-209ENST00000559961 C8BP07358 591 aa10.95□□□□□ -0.66
SNX1-209ENST00000559961 CECR9P0C854 216 aa10.95□□□□□ -0.66
SNX1-209ENST00000559961 CD79AP11912 226 aa10.95□□□□□ -0.66
SNX1-209ENST00000559961 APEHP13798 732 aaKnown RBP10.95□□□□□ -0.66
SNX1-209ENST00000559961 AQP1P29972 269 aa10.95□□□□□ -0.66
SNX1-209ENST00000559961 IDH3GP51553 393 aaPredicted RBP10.95□□□□□ -0.66
SNX1-209ENST00000559961 P2RY4P51582 365 aa10.95□□□□□ -0.66
SNX1-209ENST00000559961 GALK2Q01415 458 aa10.95□□□□□ -0.66
SNX1-209ENST00000559961 EGR4Q05215 589 aa10.95□□□□□ -0.66
SNX1-209ENST00000559961 KRTAP1-1Q07627 177 aa10.95□□□□□ -0.66
SNX1-209ENST00000559961 LGALS3BPQ08380 585 aa10.95□□□□□ -0.66
SNX1-209ENST00000559961 RBBP4Q09028 425 aa10.95□□□□□ -0.66
SNX1-209ENST00000559961 OR1Q1Q15612 314 aa10.95□□□□□ -0.66
SNX1-209ENST00000559961 SWI5Q1ZZU3 235 aa10.95□□□□□ -0.66
SNX1-209ENST00000559961 CEACAM16Q2WEN9 425 aa10.95□□□□□ -0.66
SNX1-209ENST00000559961 TRMT5Q32P41 509 aaKnown RBP10.95□□□□□ -0.66
SNX1-209ENST00000559961 SWT1Q5T5J6 900 aaKnown RBP10.95□□□□□ -0.66
SNX1-209ENST00000559961 INTS11Q5TA45 600 aaKnown RBP10.95□□□□□ -0.66
SNX1-209ENST00000559961 GKAP1Q5VSY0 366 aaPredicted RBP10.95□□□□□ -0.66
SNX1-209ENST00000559961 CARD17Q5XLA6 110 aa10.95□□□□□ -0.66
SNX1-209ENST00000559961 FAM166AQ6J272 317 aa10.95□□□□□ -0.66
SNX1-209ENST00000559961 SPATA21Q7Z572 469 aa10.95□□□□□ -0.66
SNX1-209ENST00000559961 NUP37Q8NFH4 326 aa10.95□□□□□ -0.66
SNX1-209ENST00000559961 NEU4Q8WWR8 484 aaPredicted RBP10.95□□□□□ -0.66
SNX1-209ENST00000559961 LRR1Q96L50 414 aa10.95□□□□□ -0.66
SNX1-209ENST00000559961 MDFIQ99750 246 aa10.95□□□□□ -0.66
SNX1-209ENST00000559961 PTDSS2Q9BVG9 487 aa10.95□□□□□ -0.66
SNX1-209ENST00000559961 PLK3Q9H4B4 646 aa10.95□□□□□ -0.66
SNX1-209ENST00000559961 CRNNQ9UBG3 495 aaPredicted RBP10.95□□□□□ -0.66
SNX1-209ENST00000559961 A0A087WUJ7 227 aa10.94□□□□□ -0.66
SNX1-209ENST00000559961 hCG_2039718K7EN88 272 aa10.94□□□□□ -0.66
SNX1-209ENST00000559961 LMX1BO60663 402 aa10.94□□□□□ -0.66
SNX1-209ENST00000559961 SERPINI2O75830 405 aa10.94□□□□□ -0.66
SNX1-209ENST00000559961 RAB36O95755 333 aa10.94□□□□□ -0.66
SNX1-209ENST00000559961 MT-ATP6P00846 226 aa10.94□□□□□ -0.66
SNX1-209ENST00000559961 FAM157CP0CG43 387 aa10.94□□□□□ -0.66
SNX1-209ENST00000559961 GPX2P18283 190 aa10.94□□□□□ -0.66
SNX1-209ENST00000559961 RPS23P62266 143 aaKnown RBP10.94□□□□□ -0.66
SNX1-209ENST00000559961 TUBA1BP68363 451 aa10.94□□□□□ -0.66
SNX1-209ENST00000559961 TUBA4AP68366 448 aa10.94□□□□□ -0.66
SNX1-209ENST00000559961 POU3F1Q03052 451 aaPredicted RBP10.94□□□□□ -0.66
SNX1-209ENST00000559961 PUDPQ08623 228 aa10.94□□□□□ -0.66
SNX1-209ENST00000559961 DAG1Q14118 895 aa10.94□□□□□ -0.66
SNX1-209ENST00000559961 EFNB3Q15768 340 aa10.94□□□□□ -0.66
SNX1-209ENST00000559961 PAGE3Q5JUK9 113 aa10.94□□□□□ -0.66
SNX1-209ENST00000559961 TTC33Q6PID6 262 aaPredicted RBP10.94□□□□□ -0.66
SNX1-209ENST00000559961 UGT2A3Q6UWM9 527 aa10.94□□□□□ -0.66
SNX1-209ENST00000559961 ZNF813Q6ZN06 617 aa10.94□□□□□ -0.66
SNX1-209ENST00000559961 TUBA1AQ71U36 451 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms