RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 PRAMEF7Q5VXH5 474 aa5.09□□□□□ -1.59
LIMA1-215ENST00000552823 LIPNQ5VXI9 398 aa5.09□□□□□ -1.59
LIMA1-215ENST00000552823 TCEAL6Q6IPX3 200 aa5.09□□□□□ -1.59
LIMA1-215ENST00000552823 ARHGAP11AQ6P4F7 1023 aa5.09□□□□□ -1.59
LIMA1-215ENST00000552823 ZNF613Q6PF04 617 aa5.09□□□□□ -1.59
LIMA1-215ENST00000552823 ARSKQ6UWY0 536 aa5.09□□□□□ -1.59
LIMA1-215ENST00000552823 TMPRSS11FQ6ZWK6 438 aa5.09□□□□□ -1.59
LIMA1-215ENST00000552823 TMPRSS12Q86WS5 348 aa5.09□□□□□ -1.59
LIMA1-215ENST00000552823 PLXDC1Q8IUK5 500 aa5.09□□□□□ -1.59
LIMA1-215ENST00000552823 C9orf40Q8IXQ3 194 aa5.09□□□□□ -1.59
LIMA1-215ENST00000552823 ZNF615Q8N8J6 731 aa5.09□□□□□ -1.59
LIMA1-215ENST00000552823 LGALS14Q8TCE9 139 aa5.09□□□□□ -1.59
LIMA1-215ENST00000552823 TCEAL3Q969E4 200 aa5.09□□□□□ -1.59
LIMA1-215ENST00000552823 KISS1RQ969F8 398 aaPredicted RBP5.09□□□□□ -1.59
LIMA1-215ENST00000552823 FRMD6Q96NE9 622 aa5.09□□□□□ -1.59
LIMA1-215ENST00000552823 AGAP4Q96P64 663 aa5.09□□□□□ -1.59
LIMA1-215ENST00000552823 SLC22A4Q9H015 551 aa5.09□□□□□ -1.59
LIMA1-215ENST00000552823 RXFP3Q9NSD7 469 aa5.09□□□□□ -1.59
LIMA1-215ENST00000552823 SUSD2Q9UGT4 822 aa5.09□□□□□ -1.59
LIMA1-215ENST00000552823 FLVCR2Q9UPI3 526 aa5.09□□□□□ -1.59
LIMA1-215ENST00000552823 POLR1DQ9Y2S0 133 aa5.09□□□□□ -1.59
LIMA1-215ENST00000552823 PIEZO2Q9H5I5 2752 aa5.09□□□□□ -1.6
LIMA1-215ENST00000552823 CACNA1DQ01668 2161 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 IGKV1D-42A0A075B6H8 117 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 A0A087WUJ7 227 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 TRBV11-1A0A0K0K1C0 115 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 IRGMA1A4Y4 181 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 DCDC2BA2VCK2 349 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 INMT-MINDY4F8WBC2 141 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 FLRT2O43155 660 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 SIGLEC6O43699 453 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 FMO6PO60774 539 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 PRKAR1AP10644 381 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 LIPCP11150 499 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 GIFP27352 417 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 SLC37A1P57057 533 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 OC90Q02509 493 aaPredicted RBP5.08□□□□□ -1.6
LIMA1-215ENST00000552823 TATDN3Q17R31 274 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 ZNF800Q2TB10 664 aaPredicted RBP eCLIP5.08□□□□□ -1.6
LIMA1-215ENST00000552823 TCTE1Q5JU00 501 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 CHCHD2P9Q5T1J5 151 aaPredicted RBP5.08□□□□□ -1.6
LIMA1-215ENST00000552823 LCN10Q6JVE6 187 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 PWWP2BQ6NUJ5 590 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 ZC3HAV1Q7Z2W4 902 aaKnown RBP5.08□□□□□ -1.6
LIMA1-215ENST00000552823 RNF113BQ8IZP6 322 aaKnown RBP5.08□□□□□ -1.6
LIMA1-215ENST00000552823 OR6V1Q8N148 313 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 C1orf216Q8TAB5 229 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 ITFG2Q969R8 447 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 ZNF764Q96H86 408 aaPredicted RBP5.08□□□□□ -1.6
LIMA1-215ENST00000552823 RNF170Q96K19 258 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 SPACA5Q96QH8 159 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 PSD2Q9BQI7 771 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 THAP7Q9BT49 309 aaPredicted RBP5.08□□□□□ -1.6
LIMA1-215ENST00000552823 CRB3Q9BUF7 120 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 GAREM1Q9H706 876 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 NUDT15Q9NV35 164 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 OCIAD1Q9NX40 245 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 B4DXG7 233 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 AKR7A2O43488 359 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 FZD7O75084 574 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 SCRG1O75711 98 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 OR7A10O76100 309 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 AKR7A3O95154 331 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 PTTG1O95997 202 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 AK1P00568 194 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 TMIGD3P0DMS9 266 aaPredicted RBP5.08□□□□□ -1.6
LIMA1-215ENST00000552823 MST1P26927 711 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 ABCD3P28288 659 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 CCKBRP32239 447 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 EVX1P49640 407 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 AFF3P51826 1226 aaKnown RBP5.08□□□□□ -1.6
LIMA1-215ENST00000552823 EMP2P54851 167 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 HSD17B7P56937 341 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 EGR4Q05215 589 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 C19orf57Q0VDD7 668 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 PLA2G7Q13093 441 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 FZD5Q13467 585 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 WBP2NLQ6ICG8 309 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 PAPD4Q6PIY7 484 aaKnown RBP5.08□□□□□ -1.6
LIMA1-215ENST00000552823 XKRXQ6PP77 449 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 GDPGP1Q6ZNW5 385 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 NCCRP1Q6ZVX7 275 aaPredicted RBP5.08□□□□□ -1.6
LIMA1-215ENST00000552823 FAM220AQ7Z4H9 259 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 LUZP2Q86TE4 346 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 UBQLNLQ8IYU4 475 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 ZNF527Q8NB42 609 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 NPEPL1Q8NDH3 523 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 ZNF417Q8TAU3 575 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 CHAC2Q8WUX2 184 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 DNAJA4Q8WW22 397 aaPredicted RBP5.08□□□□□ -1.6
LIMA1-215ENST00000552823 FGF11Q92914 225 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 MR1Q95460 341 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 FAM131CQ96AQ9 280 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 TXNDC15Q96J42 360 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 ZNF587Q96SQ5 575 aaPredicted RBP5.08□□□□□ -1.6
LIMA1-215ENST00000552823 CDX2Q99626 313 aaPredicted RBP5.08□□□□□ -1.6
LIMA1-215ENST00000552823 TMEM246Q9BRR3 403 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 ZNF649Q9BS31 505 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 SP140LQ9H930 580 aa5.08□□□□□ -1.6
LIMA1-215ENST00000552823 TCF7L1Q9HCS4 588 aa5.08□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms