RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 ACOXLQ9NUZ1 547 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 SOHLH2Q9NX45 425 aa5.05□□□□□ -1.6
LIMA1-203ENST00000547825 MBD1Q9UIS9 605 aaPredicted RBP5.05□□□□□ -1.6
LIMA1-203ENST00000547825 CELSR3Q9NYQ7 3312 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 LEUTXA8MZ59 168 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 PLGP00747 810 aaPredicted RBP5.04□□□□□ -1.6
LIMA1-203ENST00000547825 UGT2B7P16662 529 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 FCARP24071 287 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 DLSTP36957 453 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 AKR1C3P42330 323 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 SMAD4Q13485 552 aaKnown RBP5.04□□□□□ -1.6
LIMA1-203ENST00000547825 EIF2B1Q14232 305 aaKnown RBP5.04□□□□□ -1.6
LIMA1-203ENST00000547825 Q5BKY6 102 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 LRIF1Q5T3J3 769 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 HEPHL1Q6MZM0 1159 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 QSOX2Q6ZRP7 698 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 TMIEQ8NEW7 156 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 OR52B4Q8NGK2 314 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 SUN3Q8TAQ9 357 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 ABHD4Q8TB40 342 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 TCEAL3Q969E4 200 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 NUS1Q96E22 293 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 TRMT61AQ96FX7 289 aaKnown RBP5.04□□□□□ -1.6
LIMA1-203ENST00000547825 SLC25A44Q96H78 314 aaPredicted RBP5.04□□□□□ -1.6
LIMA1-203ENST00000547825 SIGLEC11Q96RL6 698 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 PFDN5Q99471 154 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 TRAF4Q9BUZ4 470 aaPredicted RBP5.04□□□□□ -1.6
LIMA1-203ENST00000547825 CDCA4Q9BXL8 241 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 MAN2C1Q9NTJ4 1040 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 SLC27A6Q9Y2P4 619 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 IER3IP1Q9Y5U9 82 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 RHPN2P1A8MT19 583 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 C10orf142B7Z368 130 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 ZNF878C9JN71 531 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 RAB3DO95716 219 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 LALBAP00709 142 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 EIF4EP06730 217 aaKnown RBP5.04□□□□□ -1.6
LIMA1-203ENST00000547825 SPARCP09486 303 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 ACSM4P0C7M7 580 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 FUT1P19526 365 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 TUBG1P23258 451 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 CD34P28906 385 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 S100A11P31949 105 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 RAD52P43351 418 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 SUOXP51687 545 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 TAS2R38P59533 333 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 TAS2R43P59537 309 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 PAN3Q58A45 887 aaKnown RBP5.04□□□□□ -1.6
LIMA1-203ENST00000547825 MPP7Q5T2T1 576 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 FAHD1Q6P587 224 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 TECPR1Q7Z6L1 1165 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 NKAIN4Q8IVV8 208 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 TMEFF1Q8IYR6 380 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 ARL14Q8N4G2 192 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 OR10H5Q8NGA6 315 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 OR5M3Q8NGP4 307 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 ZNF461Q8TAF7 563 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 NANPQ8TBE9 248 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 UQCC2Q9BRT2 126 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 RGCCQ9H4X1 137 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 AUNIPQ9H7T9 357 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 ISG20L2Q9H9L3 353 aaKnown RBP5.04□□□□□ -1.6
LIMA1-203ENST00000547825 PLCXD1Q9NUJ7 323 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 KLK11Q9UBX7 282 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 DIMT1Q9UNQ2 313 aaKnown RBP5.04□□□□□ -1.6
LIMA1-203ENST00000547825 PCDH15Q96QU1 1955 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 AHCTF1Q8WYP5 2266 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 CEP250Q9BV73 2442 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 TEX13DA0A0J9YY54 714 aaPredicted RBP5.04□□□□□ -1.6
LIMA1-203ENST00000547825 DRGXA6NNA5 263 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 KRBOX1C9JBD0 128 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 E9PI62 339 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 YY2O15391 372 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 PLA2G10O15496 165 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 RNF13O43567 381 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 UBL4AP11441 157 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 F3P13726 295 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 CMPK1P30085 196 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 SLC6A6P31641 620 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 PRSS3P35030 304 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 ETV6P41212 452 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 ACTR1BP42025 376 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 ACTR1AP61163 376 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 CRMP1Q14194 572 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 TOMM20Q15388 145 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 ENTPD8Q5MY95 495 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 ADAM5Q6NVV9 412 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 ZNF585AQ6P3V2 769 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 TMEM150AQ86TG1 271 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 LRRTM4Q86VH4 590 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 KLHDC8AQ8IYD2 350 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 METTL27Q8N6F8 245 aaPredicted RBP5.04□□□□□ -1.6
LIMA1-203ENST00000547825 DNAAF1Q8NEP3 725 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 OR13C2Q8NGS9 318 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 OR52I2Q8NH67 350 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 PHOSPHO1Q8TCT1 267 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 WFDC5Q8TCV5 224 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 NEK7Q8TDX7 302 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 ADAMTS14Q8WXS8 1223 aa5.04□□□□□ -1.6
LIMA1-203ENST00000547825 ZNF775Q96BV0 537 aaPredicted RBP5.04□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms