RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 ERVK-25P63136 954 aa12.79□□□□□ -0.36
CUX1-209ENST00000487284 NFATC3Q12968 1075 aa12.79□□□□□ -0.36
CUX1-209ENST00000487284 AQP6Q13520 282 aa12.79□□□□□ -0.36
CUX1-209ENST00000487284 C1DQ13901 141 aaKnown RBP12.79□□□□□ -0.36
CUX1-209ENST00000487284 INPP5JQ15735 1006 aaPredicted RBP12.79□□□□□ -0.36
CUX1-209ENST00000487284 C19orf48Q6RUI8 117 aa12.79□□□□□ -0.36
CUX1-209ENST00000487284 PAQR6Q6TCH4 344 aa12.79□□□□□ -0.36
CUX1-209ENST00000487284 SHFQ7M4L6 423 aa12.79□□□□□ -0.36
CUX1-209ENST00000487284 FAM98AQ8NCA5 519 aaKnown RBP12.79□□□□□ -0.36
CUX1-209ENST00000487284 NPEPL1Q8NDH3 523 aa12.79□□□□□ -0.36
CUX1-209ENST00000487284 SDR9C7Q8NEX9 313 aa12.79□□□□□ -0.36
CUX1-209ENST00000487284 OR4F15Q8NGB8 312 aa12.79□□□□□ -0.36
CUX1-209ENST00000487284 OR4K13Q8NH42 304 aa12.79□□□□□ -0.36
CUX1-209ENST00000487284 C1GALT1C1Q96EU7 318 aa12.79□□□□□ -0.36
CUX1-209ENST00000487284 TEAD3Q99594 435 aa12.79□□□□□ -0.36
CUX1-209ENST00000487284 RNF32Q9H0A6 362 aa12.79□□□□□ -0.36
CUX1-209ENST00000487284 KLHL1Q9NR64 748 aa12.79□□□□□ -0.36
CUX1-209ENST00000487284 HAO2Q9NYQ3 351 aa12.79□□□□□ -0.36
CUX1-209ENST00000487284 TNFRSF10DQ9UBN6 386 aa12.79□□□□□ -0.36
CUX1-209ENST00000487284 A0A0G2JMM0 328 aa12.78□□□□□ -0.36
CUX1-209ENST00000487284 A0A1W2PPB8 328 aa12.78□□□□□ -0.36
CUX1-209ENST00000487284 A0A1W2PRS3 328 aa12.78□□□□□ -0.36
CUX1-209ENST00000487284 TMEM8BA6NDV4 472 aa12.78□□□□□ -0.36
CUX1-209ENST00000487284 KIR3DP1A8MWS1 328 aa12.78□□□□□ -0.36
CUX1-209ENST00000487284 SLC22A1O15245 554 aa12.78□□□□□ -0.36
CUX1-209ENST00000487284 FZD7O75084 574 aa12.78□□□□□ -0.36
CUX1-209ENST00000487284 P04436 131 aa12.78□□□□□ -0.36
CUX1-209ENST00000487284 SCG5P05408 212 aa12.78□□□□□ -0.36
CUX1-209ENST00000487284 SDHAP31040 664 aa12.78□□□□□ -0.36
CUX1-209ENST00000487284 RGS6P49758 472 aa12.78□□□□□ -0.36
CUX1-209ENST00000487284 CTXN1P60606 82 aa12.78□□□□□ -0.36
CUX1-209ENST00000487284 ARG2P78540 354 aa12.78□□□□□ -0.36
CUX1-209ENST00000487284 TBR1Q16650 682 aa12.78□□□□□ -0.36
CUX1-209ENST00000487284 EMC4Q5J8M3 183 aa12.78□□□□□ -0.36
CUX1-209ENST00000487284 IGFL2Q6UWQ7 119 aa12.78□□□□□ -0.36
CUX1-209ENST00000487284 PLCZ1Q86YW0 608 aa12.78□□□□□ -0.36
CUX1-209ENST00000487284 OR4K17Q8NGC6 315 aa12.78□□□□□ -0.36
CUX1-209ENST00000487284 OR5J2Q8NH18 312 aa12.78□□□□□ -0.36
CUX1-209ENST00000487284 POC1BQ8TC44 478 aa12.78□□□□□ -0.36
CUX1-209ENST00000487284 SNRNP27Q8WVK2 155 aaKnown RBP12.78□□□□□ -0.36
CUX1-209ENST00000487284 HAS2Q92819 552 aa12.78□□□□□ -0.36
CUX1-209ENST00000487284 EXTL1Q92935 676 aa12.78□□□□□ -0.36
CUX1-209ENST00000487284 RASD2Q96D21 266 aa12.78□□□□□ -0.36
CUX1-209ENST00000487284 Q96M85 177 aa12.78□□□□□ -0.36
CUX1-209ENST00000487284 OPALINQ96PE5 141 aa12.78□□□□□ -0.36
CUX1-209ENST00000487284 SMAD5Q99717 465 aaKnown RBP12.78□□□□□ -0.36
CUX1-209ENST00000487284 ZNF649Q9BS31 505 aa12.78□□□□□ -0.36
CUX1-209ENST00000487284 HES7Q9BYE0 225 aa12.78□□□□□ -0.36
CUX1-209ENST00000487284 NMNAT2Q9BZQ4 307 aa12.78□□□□□ -0.36
CUX1-209ENST00000487284 PTGES2Q9H7Z7 377 aa12.78□□□□□ -0.36
CUX1-209ENST00000487284 TIMMDC1Q9NPL8 285 aa12.78□□□□□ -0.36
CUX1-209ENST00000487284 SACM1LQ9NTJ5 587 aa12.78□□□□□ -0.36
CUX1-209ENST00000487284 CHCHD3Q9NX63 227 aaKnown RBP12.78□□□□□ -0.36
CUX1-209ENST00000487284 MRPL39Q9NYK5 338 aaKnown RBP12.78□□□□□ -0.36
CUX1-209ENST00000487284 TAS2R5Q9NYW4 299 aa12.78□□□□□ -0.36
CUX1-209ENST00000487284 FBXL2Q9UKC9 423 aa12.78□□□□□ -0.36
CUX1-209ENST00000487284 CSAG2Q9Y5P2 127 aa12.78□□□□□ -0.36
CUX1-209ENST00000487284 TEX13CA0A0J9YWL9 993 aa12.77□□□□□ -0.36
CUX1-209ENST00000487284 VGLL3A8MV65 326 aa12.77□□□□□ -0.36
CUX1-209ENST00000487284 FAM47E-STBD1D6RA91 191 aa12.77□□□□□ -0.36
CUX1-209ENST00000487284 CDK2AP1O14519 115 aa12.77□□□□□ -0.36
CUX1-209ENST00000487284 SNPHO15079 494 aa12.77□□□□□ -0.36
CUX1-209ENST00000487284 HSMCR30P0CW71 290 aa12.77□□□□□ -0.36
CUX1-209ENST00000487284 CLUP10909 449 aa12.77□□□□□ -0.36
CUX1-209ENST00000487284 NR4A1P22736 598 aa12.77□□□□□ -0.36
CUX1-209ENST00000487284 GRPRP30550 384 aa12.77□□□□□ -0.36
CUX1-209ENST00000487284 DNASE1L1P49184 302 aa12.77□□□□□ -0.36
CUX1-209ENST00000487284 WNT4P56705 351 aa12.77□□□□□ -0.36
CUX1-209ENST00000487284 GPR85P60893 370 aa12.77□□□□□ -0.36
CUX1-209ENST00000487284 MLLT11Q13015 90 aaPredicted RBP12.77□□□□□ -0.36
CUX1-209ENST00000487284 SPCS2Q15005 226 aa12.77□□□□□ -0.36
CUX1-209ENST00000487284 TSTQ16762 297 aaKnown RBP12.77□□□□□ -0.36
CUX1-209ENST00000487284 KLHL12Q53G59 568 aa12.77□□□□□ -0.36
CUX1-209ENST00000487284 GPR139Q6DWJ6 353 aa12.77□□□□□ -0.36
CUX1-209ENST00000487284 KDF1Q8NAX2 398 aaPredicted RBP12.77□□□□□ -0.36
CUX1-209ENST00000487284 ZNF485Q8NCK3 441 aa12.77□□□□□ -0.36
CUX1-209ENST00000487284 LSM14AQ8ND56 463 aaKnown RBP12.77□□□□□ -0.36
CUX1-209ENST00000487284 MDS2Q8NDY4 140 aa12.77□□□□□ -0.36
CUX1-209ENST00000487284 OR51G2Q8NGK0 314 aa12.77□□□□□ -0.36
CUX1-209ENST00000487284 OR9Q1Q8NGQ5 310 aa12.77□□□□□ -0.36
CUX1-209ENST00000487284 MFSD8Q8NHS3 518 aa12.77□□□□□ -0.36
CUX1-209ENST00000487284 SLC25A36Q96CQ1 311 aa12.77□□□□□ -0.36
CUX1-209ENST00000487284 DCUN1D5Q9BTE7 237 aa12.77□□□□□ -0.36
CUX1-209ENST00000487284 POTEKPQ9BYX7 375 aa12.77□□□□□ -0.36
CUX1-209ENST00000487284 OR51V1Q9H2C8 321 aa12.77□□□□□ -0.36
CUX1-209ENST00000487284 DEPPQ9NTK1 212 aa12.77□□□□□ -0.36
CUX1-209ENST00000487284 ERVK13-1Q9NX77 482 aa12.77□□□□□ -0.36
CUX1-209ENST00000487284 PCDHGA9Q9Y5G4 932 aaKnown RBP12.77□□□□□ -0.36
CUX1-209ENST00000487284 PIEZO2Q9H5I5 2752 aa12.77□□□□□ -0.36
CUX1-209ENST00000487284 MAP1BP46821 2468 aaKnown RBP12.77□□□□□ -0.37
CUX1-209ENST00000487284 BOD1L1Q8NFC6 3051 aa12.77□□□□□ -0.37
CUX1-209ENST00000487284 A0A087WZY1 265 aa12.77□□□□□ -0.37
CUX1-209ENST00000487284 OR6C68A6NDL8 312 aa12.77□□□□□ -0.37
CUX1-209ENST00000487284 CCRL2O00421 344 aa12.77□□□□□ -0.37
CUX1-209ENST00000487284 EFNA2O43921 213 aa12.77□□□□□ -0.37
CUX1-209ENST00000487284 F13BP05160 661 aa12.77□□□□□ -0.37
CUX1-209ENST00000487284 GADD45AP24522 165 aa12.77□□□□□ -0.37
CUX1-209ENST00000487284 ADH6P28332 368 aa12.77□□□□□ -0.37
CUX1-209ENST00000487284 ATP6V1E1P36543 226 aa12.77□□□□□ -0.37
CUX1-209ENST00000487284 EIF1P41567 113 aaKnown RBP12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms