RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 CXCR2P25025 360 aa3.78□□□□□ -1.8
UPF3B-203ENST00000478840 RRM2P31350 389 aa3.78□□□□□ -1.8
UPF3B-203ENST00000478840 NAMPTP43490 491 aa3.78□□□□□ -1.8
UPF3B-203ENST00000478840 ARRB1P49407 418 aaPredicted RBP3.78□□□□□ -1.8
UPF3B-203ENST00000478840 SLC26A2P50443 739 aa3.78□□□□□ -1.8
UPF3B-203ENST00000478840 GPX6P59796 221 aa3.78□□□□□ -1.8
UPF3B-203ENST00000478840 RAB10P61026 200 aa3.78□□□□□ -1.8
UPF3B-203ENST00000478840 C1orf100Q5SVJ3 147 aa3.78□□□□□ -1.8
UPF3B-203ENST00000478840 TRIM40Q6P9F5 258 aa3.78□□□□□ -1.8
UPF3B-203ENST00000478840 EIF3MQ7L2H7 374 aaKnown RBP3.78□□□□□ -1.8
UPF3B-203ENST00000478840 FAM220AQ7Z4H9 259 aa3.78□□□□□ -1.8
UPF3B-203ENST00000478840 HSD17B13Q7Z5P4 300 aaPredicted RBP3.78□□□□□ -1.8
UPF3B-203ENST00000478840 CDC20BQ86Y33 519 aa3.78□□□□□ -1.8
UPF3B-203ENST00000478840 TMEM252Q8N6L7 170 aa3.78□□□□□ -1.8
UPF3B-203ENST00000478840 ACOT4Q8N9L9 421 aa3.78□□□□□ -1.8
UPF3B-203ENST00000478840 OR52I1Q8NGK6 324 aa3.78□□□□□ -1.8
UPF3B-203ENST00000478840 ARHGDIGQ99819 225 aa3.78□□□□□ -1.8
UPF3B-203ENST00000478840 KCTD14Q9BQ13 255 aaPredicted RBP3.78□□□□□ -1.8
UPF3B-203ENST00000478840 CNPY3Q9BT09 278 aa3.78□□□□□ -1.8
UPF3B-203ENST00000478840 TMEM59Q9BXS4 323 aa3.78□□□□□ -1.8
UPF3B-203ENST00000478840 ACTR6Q9GZN1 396 aa3.78□□□□□ -1.8
UPF3B-203ENST00000478840 GBA3Q9H227 469 aa3.78□□□□□ -1.8
UPF3B-203ENST00000478840 NEUROG2Q9H2A3 272 aa3.78□□□□□ -1.8
UPF3B-203ENST00000478840 RANBP3Q9H6Z4 567 aaPredicted RBP3.78□□□□□ -1.8
UPF3B-203ENST00000478840 SH2D2AQ9NP31 389 aa3.78□□□□□ -1.8
UPF3B-203ENST00000478840 MRPS30Q9NP92 439 aaKnown RBP3.78□□□□□ -1.8
UPF3B-203ENST00000478840 IL26Q9NPH9 171 aa3.78□□□□□ -1.8
UPF3B-203ENST00000478840 GPATCH2LQ9NWQ4 482 aa3.78□□□□□ -1.8
UPF3B-203ENST00000478840 MARCH5Q9NX47 278 aa3.78□□□□□ -1.8
UPF3B-203ENST00000478840 TREM2Q9NZC2 230 aa3.78□□□□□ -1.8
UPF3B-203ENST00000478840 TMEM9Q9P0T7 183 aa3.78□□□□□ -1.8
UPF3B-203ENST00000478840 ZNF107Q9UII5 783 aaPredicted RBP3.78□□□□□ -1.8
UPF3B-203ENST00000478840 CHTOPQ9Y3Y2 248 aaKnown RBP3.78□□□□□ -1.8
UPF3B-203ENST00000478840 A0A1B0GTQ1 180 aa3.77□□□□□ -1.81
UPF3B-203ENST00000478840 FAM168BA1KXE4 195 aa3.77□□□□□ -1.81
UPF3B-203ENST00000478840 A6NIZ1 184 aa3.77□□□□□ -1.81
UPF3B-203ENST00000478840 SPECC1L-ADORA2AF8WAN1 911 aa3.77□□□□□ -1.81
UPF3B-203ENST00000478840 GOSR2O14653 212 aa3.77□□□□□ -1.81
UPF3B-203ENST00000478840 ZNF780AO75290 641 aaPredicted RBP3.77□□□□□ -1.81
UPF3B-203ENST00000478840 FOXN2P32314 431 aa3.77□□□□□ -1.81
UPF3B-203ENST00000478840 NAA10P41227 235 aaPredicted RBP3.77□□□□□ -1.81
UPF3B-203ENST00000478840 GLP1RP43220 463 aa3.77□□□□□ -1.81
UPF3B-203ENST00000478840 CCNHP51946 323 aaPredicted RBP3.77□□□□□ -1.81
UPF3B-203ENST00000478840 DLX1P56177 255 aa3.77□□□□□ -1.81
UPF3B-203ENST00000478840 RAP1BP61224 184 aa3.77□□□□□ -1.81
UPF3B-203ENST00000478840 ZNF45Q02386 682 aa3.77□□□□□ -1.81
UPF3B-203ENST00000478840 MRPL23Q16540 153 aaKnown RBP3.77□□□□□ -1.81
UPF3B-203ENST00000478840 CAVIN4Q5BKX8 364 aa3.77□□□□□ -1.81
UPF3B-203ENST00000478840 EOGTQ5NDL2 527 aa3.77□□□□□ -1.81
UPF3B-203ENST00000478840 VAX1Q5SQQ9 334 aa3.77□□□□□ -1.81
UPF3B-203ENST00000478840 C9orf135Q5VTT2 229 aa3.77□□□□□ -1.81
UPF3B-203ENST00000478840 TMEM53Q6P2H8 277 aa3.77□□□□□ -1.81
UPF3B-203ENST00000478840 KATNAL2Q8IYT4 538 aa3.77□□□□□ -1.81
UPF3B-203ENST00000478840 GABRG1Q8N1C3 465 aa3.77□□□□□ -1.81
UPF3B-203ENST00000478840 FBXL16Q8N461 479 aa3.77□□□□□ -1.81
UPF3B-203ENST00000478840 OR10H4Q8NGA5 316 aa3.77□□□□□ -1.81
UPF3B-203ENST00000478840 OR2AP1Q8NGE2 309 aa3.77□□□□□ -1.81
UPF3B-203ENST00000478840 ACOT11Q8WXI4 607 aaPredicted RBP3.77□□□□□ -1.81
UPF3B-203ENST00000478840 KIFAP3Q92845 792 aa3.77□□□□□ -1.81
UPF3B-203ENST00000478840 SMARCD2Q92925 531 aa3.77□□□□□ -1.81
UPF3B-203ENST00000478840 RIOK2Q9BVS4 552 aaKnown RBP3.77□□□□□ -1.81
UPF3B-203ENST00000478840 DNTTIP1Q9H147 329 aa3.77□□□□□ -1.81
UPF3B-203ENST00000478840 ZNF275Q9NSD4 429 aaPredicted RBP3.77□□□□□ -1.81
UPF3B-203ENST00000478840 BTNL2Q9UIR0 455 aa3.77□□□□□ -1.81
UPF3B-203ENST00000478840 RAB29O14966 203 aa3.76□□□□□ -1.81
UPF3B-203ENST00000478840 LSM1O15116 133 aaKnown RBP3.76□□□□□ -1.81
UPF3B-203ENST00000478840 TIMP1P01033 207 aa3.76□□□□□ -1.81
UPF3B-203ENST00000478840 HSPB1P04792 205 aaKnown RBP3.76□□□□□ -1.81
UPF3B-203ENST00000478840 ERCC1P07992 297 aaPredicted RBP3.76□□□□□ -1.81
UPF3B-203ENST00000478840 RALBP11234 206 aa3.76□□□□□ -1.81
UPF3B-203ENST00000478840 ATP6V1B2P21281 511 aa3.76□□□□□ -1.81
UPF3B-203ENST00000478840 CCT6AP40227 531 aaKnown RBP3.76□□□□□ -1.81
UPF3B-203ENST00000478840 NPBWR2P48146 333 aa3.76□□□□□ -1.81
UPF3B-203ENST00000478840 CSNK1EP49674 416 aaKnown RBP3.76□□□□□ -1.81
UPF3B-203ENST00000478840 CLDN8P56748 225 aa3.76□□□□□ -1.81
UPF3B-203ENST00000478840 HSDL1Q3SXM5 330 aa3.76□□□□□ -1.81
UPF3B-203ENST00000478840 LY6G6FQ5SQ64 297 aa3.76□□□□□ -1.81
UPF3B-203ENST00000478840 CASC10Q5T4H9 136 aa3.76□□□□□ -1.81
UPF3B-203ENST00000478840 TMIGD1Q6UXZ0 262 aa3.76□□□□□ -1.81
UPF3B-203ENST00000478840 Q6ZN92 141 aa3.76□□□□□ -1.81
UPF3B-203ENST00000478840 ASCL5Q7RTU5 278 aa3.76□□□□□ -1.81
UPF3B-203ENST00000478840 ZNF571Q7Z3V5 609 aaPredicted RBP3.76□□□□□ -1.81
UPF3B-203ENST00000478840 ZNF546Q86UE3 836 aa3.76□□□□□ -1.81
UPF3B-203ENST00000478840 ZNF557Q8N988 423 aaPredicted RBP3.76□□□□□ -1.81
UPF3B-203ENST00000478840 FAM184AQ8NB25 1140 aa3.76□□□□□ -1.81
UPF3B-203ENST00000478840 FBXL13Q8NEE6 735 aa3.76□□□□□ -1.81
UPF3B-203ENST00000478840 OR4A4PQ8NGN8 299 aa3.76□□□□□ -1.81
UPF3B-203ENST00000478840 OR1S2Q8NGQ3 325 aa3.76□□□□□ -1.81
UPF3B-203ENST00000478840 ZNF564Q8TBZ8 553 aaPredicted RBP3.76□□□□□ -1.81
UPF3B-203ENST00000478840 C7orf33Q8WU49 177 aa3.76□□□□□ -1.81
UPF3B-203ENST00000478840 C8orf44Q96CB5 159 aa3.76□□□□□ -1.81
UPF3B-203ENST00000478840 HSFY1Q96LI6 401 aa3.76□□□□□ -1.81
UPF3B-203ENST00000478840 ATP5SQ99766 215 aa3.76□□□□□ -1.81
UPF3B-203ENST00000478840 EBF4Q9BQW3 602 aa3.76□□□□□ -1.81
UPF3B-203ENST00000478840 NICN1Q9BSH3 213 aa3.76□□□□□ -1.81
UPF3B-203ENST00000478840 IQCGQ9H095 443 aaKnown RBP3.76□□□□□ -1.81
UPF3B-203ENST00000478840 OR51M1Q9H341 326 aa3.76□□□□□ -1.81
UPF3B-203ENST00000478840 RNF167Q9H6Y7 350 aa3.76□□□□□ -1.81
UPF3B-203ENST00000478840 PTGES2Q9H7Z7 377 aa3.76□□□□□ -1.81
UPF3B-203ENST00000478840 RPRD1BQ9NQG5 326 aaKnown RBP3.76□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms